RNA–Protein interactions for RNA: ENST00000338963.6

NEDD4-201, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, humanhuman

TSL 1 (best) BASIC

Gene NEDD4, Length 7,019 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4-201ENST00000338963 GPAT4Q86UL3 456 aa4.16□□□□□ -1.74
NEDD4-201ENST00000338963 IPCEF1Q8WWN9 437 aaPredicted RBP4.16□□□□□ -1.74
NEDD4-201ENST00000338963 TRMT2BQ96GJ1 504 aaKnown RBP4.16□□□□□ -1.74
NEDD4-201ENST00000338963 OR51V1Q9H2C8 321 aa4.16□□□□□ -1.74
NEDD4-201ENST00000338963 WDR41Q9HAD4 459 aa4.16□□□□□ -1.74
NEDD4-201ENST00000338963 IMP3Q9NV31 184 aaKnown RBP4.16□□□□□ -1.74
NEDD4-201ENST00000338963 COX16Q9P0S2 106 aa4.16□□□□□ -1.74
NEDD4-201ENST00000338963 NENFQ9UMX5 172 aa4.16□□□□□ -1.74
NEDD4-201ENST00000338963 LIPT1Q9Y234 373 aa4.16□□□□□ -1.74
NEDD4-201ENST00000338963 DMRT1Q9Y5R6 373 aa4.16□□□□□ -1.74
NEDD4-201ENST00000338963 ADGRB1O14514 1584 aa4.16□□□□□ -1.74
NEDD4-201ENST00000338963 TO15178 435 aa4.16□□□□□ -1.74
NEDD4-201ENST00000338963 RAD1O60671 282 aa4.16□□□□□ -1.74
NEDD4-201ENST00000338963 FTH1P02794 183 aa4.16□□□□□ -1.74
NEDD4-201ENST00000338963 SUPT20HL2P0C7V6 817 aa4.16□□□□□ -1.74
NEDD4-201ENST00000338963 BMP4P12644 408 aa4.16□□□□□ -1.74
NEDD4-201ENST00000338963 SPAM1P38567 509 aa4.16□□□□□ -1.74
NEDD4-201ENST00000338963 NSFP46459 744 aaKnown RBP4.16□□□□□ -1.74
NEDD4-201ENST00000338963 SULT1E1P49888 294 aa4.16□□□□□ -1.74
NEDD4-201ENST00000338963 NUDT2P50583 147 aa4.16□□□□□ -1.74
NEDD4-201ENST00000338963 KCNJ10P78508 379 aa4.16□□□□□ -1.74
NEDD4-201ENST00000338963 BST1Q10588 318 aa4.16□□□□□ -1.74
NEDD4-201ENST00000338963 NFIXQ14938 502 aa4.16□□□□□ -1.74
NEDD4-201ENST00000338963 CHI3L2Q15782 390 aa4.16□□□□□ -1.74
NEDD4-201ENST00000338963 LRRC24Q50LG9 513 aa4.16□□□□□ -1.74
NEDD4-201ENST00000338963 C2CD6Q53TS8 623 aa4.16□□□□□ -1.74
NEDD4-201ENST00000338963 SCYL2Q6P3W7 929 aa4.16□□□□□ -1.74
NEDD4-201ENST00000338963 TMEM81Q6P7N7 255 aa4.16□□□□□ -1.74
NEDD4-201ENST00000338963 SSX9Q7RTT3 188 aa4.16□□□□□ -1.74
NEDD4-201ENST00000338963 ALYREFQ86V81 257 aaKnown RBP4.16□□□□□ -1.74
NEDD4-201ENST00000338963 CYP4Z2PQ8N1L4 340 aa4.16□□□□□ -1.74
NEDD4-201ENST00000338963 KLHL36Q8N4N3 616 aa4.16□□□□□ -1.74
NEDD4-201ENST00000338963 UBR7Q8N806 425 aa4.16□□□□□ -1.74
NEDD4-201ENST00000338963 IL17RCQ8NAC3 791 aa4.16□□□□□ -1.74
NEDD4-201ENST00000338963 C11orf65Q8NCR3 313 aa4.16□□□□□ -1.74
NEDD4-201ENST00000338963 JDP2Q8WYK2 163 aa4.16□□□□□ -1.74
NEDD4-201ENST00000338963 CLPTM1LQ96KA5 538 aa4.16□□□□□ -1.74
NEDD4-201ENST00000338963 TTLL2Q9BWV7 592 aa4.16□□□□□ -1.74
NEDD4-201ENST00000338963 TRIM9Q9C026 710 aa4.16□□□□□ -1.74
NEDD4-201ENST00000338963 UNC93B1Q9H1C4 597 aa4.16□□□□□ -1.74
NEDD4-201ENST00000338963 OR51M1Q9H341 326 aa4.16□□□□□ -1.74
NEDD4-201ENST00000338963 DPP3Q9NY33 737 aa4.16□□□□□ -1.74
NEDD4-201ENST00000338963 GMPPBQ9Y5P6 360 aa4.16□□□□□ -1.74
NEDD4-201ENST00000338963 SLIT3O75094 1523 aa4.16□□□□□ -1.74
NEDD4-201ENST00000338963 ADGRF5Q8IZF2 1346 aa4.15□□□□□ -1.74
NEDD4-201ENST00000338963 IGSF1Q8N6C5 1336 aa4.15□□□□□ -1.74
NEDD4-201ENST00000338963 OR6C74A6NCV1 312 aa4.15□□□□□ -1.74
NEDD4-201ENST00000338963 UBXN8O00124 270 aa4.15□□□□□ -1.74
NEDD4-201ENST00000338963 KLRC4O43908 158 aa4.15□□□□□ -1.74
NEDD4-201ENST00000338963 MITFO75030 526 aaPredicted RBP4.15□□□□□ -1.74
NEDD4-201ENST00000338963 PAX6P26367 422 aa4.15□□□□□ -1.74
NEDD4-201ENST00000338963 PCP4P48539 62 aa4.15□□□□□ -1.74
NEDD4-201ENST00000338963 AFF1P51825 1210 aaKnown RBP4.15□□□□□ -1.74
NEDD4-201ENST00000338963 PSMC6P62333 389 aa4.15□□□□□ -1.74
NEDD4-201ENST00000338963 ARID5AQ03989 594 aa4.15□□□□□ -1.74
NEDD4-201ENST00000338963 SNTA1Q13424 505 aa4.15□□□□□ -1.74
NEDD4-201ENST00000338963 ETV3LQ6ZN32 361 aa4.15□□□□□ -1.74
NEDD4-201ENST00000338963 WDSUB1Q8N9V3 476 aa4.15□□□□□ -1.74
NEDD4-201ENST00000338963 FANCBQ8NB91 859 aa4.15□□□□□ -1.74
NEDD4-201ENST00000338963 SH3RF3Q8TEJ3 882 aaPredicted RBP4.15□□□□□ -1.74
NEDD4-201ENST00000338963 SLC39A7Q92504 469 aa4.15□□□□□ -1.74
NEDD4-201ENST00000338963 TRIM43Q96BQ3 446 aaPredicted RBP4.15□□□□□ -1.74
NEDD4-201ENST00000338963 RBM18Q96H35 190 aaKnown RBP4.15□□□□□ -1.74
NEDD4-201ENST00000338963 C9orf72Q96LT7 481 aa4.15□□□□□ -1.74
NEDD4-201ENST00000338963 EYA3Q99504 573 aa4.15□□□□□ -1.74
NEDD4-201ENST00000338963 TTYH2Q9BSA4 534 aa4.15□□□□□ -1.74
NEDD4-201ENST00000338963 GPR63Q9BZJ6 419 aa4.15□□□□□ -1.74
NEDD4-201ENST00000338963 SLC13A1Q9BZW2 595 aa4.15□□□□□ -1.74
NEDD4-201ENST00000338963 SPNS1Q9H2V7 528 aa4.15□□□□□ -1.74
NEDD4-201ENST00000338963 OLA1Q9NTK5 396 aaKnown RBP4.15□□□□□ -1.74
NEDD4-201ENST00000338963 IMPAD1Q9NX62 359 aa4.15□□□□□ -1.74
NEDD4-201ENST00000338963 KLQ9UEF7 1012 aa4.15□□□□□ -1.74
NEDD4-201ENST00000338963 CORINQ9Y5Q5 1042 aa4.15□□□□□ -1.74
NEDD4-201ENST00000338963 HSPE1-MOB4S4R3N1 261 aa4.15□□□□□ -1.74
NEDD4-201ENST00000338963 ACOD1A6NK06 481 aa4.15□□□□□ -1.74
NEDD4-201ENST00000338963 L7N2F9 121 aa4.15□□□□□ -1.74
NEDD4-201ENST00000338963 PCDH17O14917 1159 aa4.15□□□□□ -1.74
NEDD4-201ENST00000338963 SIGLEC6O43699 453 aa4.15□□□□□ -1.74
NEDD4-201ENST00000338963 RFPL3O75679 317 aa4.15□□□□□ -1.74
NEDD4-201ENST00000338963 GPIP06744 558 aa4.15□□□□□ -1.74
NEDD4-201ENST00000338963 GABRB2P47870 512 aa4.15□□□□□ -1.74
NEDD4-201ENST00000338963 KCNJ5P48544 419 aa4.15□□□□□ -1.74
NEDD4-201ENST00000338963 TKTL1P51854 596 aa4.15□□□□□ -1.74
NEDD4-201ENST00000338963 ANTXR2P58335 489 aa4.15□□□□□ -1.74
NEDD4-201ENST00000338963 ERVK-8P63133 956 aa4.15□□□□□ -1.74
NEDD4-201ENST00000338963 FGL1Q08830 312 aa4.15□□□□□ -1.74
NEDD4-201ENST00000338963 PTGDRQ13258 359 aa4.15□□□□□ -1.74
NEDD4-201ENST00000338963 GCKRQ14397 625 aa4.15□□□□□ -1.74
NEDD4-201ENST00000338963 CCDC142Q17RM4 750 aa4.15□□□□□ -1.74
NEDD4-201ENST00000338963 KIZQ2M2Z5 673 aa4.15□□□□□ -1.74
NEDD4-201ENST00000338963 DNLZQ5SXM8 178 aa4.15□□□□□ -1.74
NEDD4-201ENST00000338963 TPRG1LQ5T0D9 272 aa4.15□□□□□ -1.74
NEDD4-201ENST00000338963 SMYD5Q6GMV2 418 aa4.15□□□□□ -1.74
NEDD4-201ENST00000338963 ZSCAN2Q7Z7L9 614 aaPredicted RBP4.15□□□□□ -1.74
NEDD4-201ENST00000338963 SPAG16Q8N0X2 631 aa4.15□□□□□ -1.74
NEDD4-201ENST00000338963 VWA5B2Q8N398 1253 aa4.15□□□□□ -1.74
NEDD4-201ENST00000338963 EIF4E3Q8N5X7 224 aaKnown RBP4.15□□□□□ -1.74
NEDD4-201ENST00000338963 ATG16L2Q8NAA4 619 aa4.15□□□□□ -1.74
NEDD4-201ENST00000338963 C7orf57Q8NEG2 295 aa4.15□□□□□ -1.74
NEDD4-201ENST00000338963 OR6C4Q8NGE1 309 aa4.15□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms