RNA–Protein interactions for RNA: ENST00000322213.8

SMC1A-201, Transcript of structural maintenance of chromosomes 1A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMC1A, Length 9,784 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1A-201ENST00000322213 ZFP42Q96MM3 310 aa7.06□□□□□ -1.28
SMC1A-201ENST00000322213 SPATA33Q96N06 139 aa7.06□□□□□ -1.28
SMC1A-201ENST00000322213 SAE1Q9UBE0 346 aaPredicted RBP7.06□□□□□ -1.28
SMC1A-201ENST00000322213 KCNH4Q9UQ05 1017 aa7.06□□□□□ -1.28
SMC1A-201ENST00000322213 IFT52Q9Y366 437 aa7.06□□□□□ -1.28
SMC1A-201ENST00000322213 CHRM3P20309 590 aa7.06□□□□□ -1.28
SMC1A-201ENST00000322213 RBL1P28749 1068 aa7.06□□□□□ -1.28
SMC1A-201ENST00000322213 HTR2BP41595 481 aa7.06□□□□□ -1.28
SMC1A-201ENST00000322213 RPS7P62081 194 aaKnown RBP7.06□□□□□ -1.28
SMC1A-201ENST00000322213 CRY1Q16526 586 aa7.06□□□□□ -1.28
SMC1A-201ENST00000322213 STXBP5Q5T5C0 1151 aa7.06□□□□□ -1.28
SMC1A-201ENST00000322213 APTXQ7Z2E3 356 aaKnown RBP7.06□□□□□ -1.28
SMC1A-201ENST00000322213 GPSM1Q86YR5 675 aa7.06□□□□□ -1.28
SMC1A-201ENST00000322213 MEIOBQ8N635 442 aa7.06□□□□□ -1.28
SMC1A-201ENST00000322213 GMCL1P1Q8NEA9 526 aa7.06□□□□□ -1.28
SMC1A-201ENST00000322213 ZNF671Q8TAW3 534 aa7.06□□□□□ -1.28
SMC1A-201ENST00000322213 SIPA1Q96FS4 1042 aa7.06□□□□□ -1.28
SMC1A-201ENST00000322213 PRICKLE1Q96MT3 831 aaPredicted RBP7.06□□□□□ -1.28
SMC1A-201ENST00000322213 CINPQ9BW66 212 aaPredicted RBP7.06□□□□□ -1.28
SMC1A-201ENST00000322213 GTPBP2Q9BX10 602 aaKnown RBP7.06□□□□□ -1.28
SMC1A-201ENST00000322213 KAT8Q9H7Z6 458 aaKnown RBP7.06□□□□□ -1.28
SMC1A-201ENST00000322213 OAZ3Q9UMX2 235 aa7.06□□□□□ -1.28
SMC1A-201ENST00000322213 IRAK3Q9Y616 596 aa7.06□□□□□ -1.28
SMC1A-201ENST00000322213 PRMT5O14744 637 aaPredicted RBP7.06□□□□□ -1.28
SMC1A-201ENST00000322213 MICAL2O94851 1124 aa7.06□□□□□ -1.28
SMC1A-201ENST00000322213 ITGB3P05106 788 aa7.06□□□□□ -1.28
SMC1A-201ENST00000322213 PNPLA4P41247 253 aa7.06□□□□□ -1.28
SMC1A-201ENST00000322213 STRIP1Q5VSL9 837 aa7.06□□□□□ -1.28
SMC1A-201ENST00000322213 ZDHHC24Q6UX98 284 aa7.06□□□□□ -1.28
SMC1A-201ENST00000322213 TMPRSS11AQ6ZMR5 421 aa7.06□□□□□ -1.28
SMC1A-201ENST00000322213 SPATA19Q7Z5L4 167 aa7.06□□□□□ -1.28
SMC1A-201ENST00000322213 ADGRG6Q86SQ4 1221 aa7.06□□□□□ -1.28
SMC1A-201ENST00000322213 KIF18BQ86Y91 864 aa7.06□□□□□ -1.28
SMC1A-201ENST00000322213 CLHC1Q8NHS4 586 aa7.06□□□□□ -1.28
SMC1A-201ENST00000322213 NELL1Q92832 810 aa7.06□□□□□ -1.28
SMC1A-201ENST00000322213 CD101Q93033 1021 aa7.06□□□□□ -1.28
SMC1A-201ENST00000322213 LENG8Q96PV6 779 aaPredicted RBP7.06□□□□□ -1.28
SMC1A-201ENST00000322213 PPP1R16BQ96T49 567 aa7.06□□□□□ -1.28
SMC1A-201ENST00000322213 ADGRE3Q9BY15 652 aa7.06□□□□□ -1.28
SMC1A-201ENST00000322213 TMEM138Q9NPI0 162 aa7.06□□□□□ -1.28
SMC1A-201ENST00000322213 ADGRE2Q9UHX3 823 aa7.06□□□□□ -1.28
SMC1A-201ENST00000322213 NCKAP5O14513 1909 aa7.05□□□□□ -1.28
SMC1A-201ENST00000322213 PSMA3P25788 255 aa7.05□□□□□ -1.28
SMC1A-201ENST00000322213 DRICH1Q6PGQ1 229 aaPredicted RBP7.05□□□□□ -1.28
SMC1A-201ENST00000322213 DCDC5Q6ZRR9 648 aa7.05□□□□□ -1.28
SMC1A-201ENST00000322213 MON1BQ7L1V2 547 aa7.05□□□□□ -1.28
SMC1A-201ENST00000322213 IFNL1Q8IU54 200 aa7.05□□□□□ -1.28
SMC1A-201ENST00000322213 TBC1D19Q8N5T2 526 aa7.05□□□□□ -1.28
SMC1A-201ENST00000322213 TMEM176AQ96HP8 235 aa7.05□□□□□ -1.28
SMC1A-201ENST00000322213 SMAD5Q99717 465 aaKnown RBP7.05□□□□□ -1.28
SMC1A-201ENST00000322213 CLPBQ9H078 707 aa7.05□□□□□ -1.28
SMC1A-201ENST00000322213 NEK6Q9HC98 313 aa7.05□□□□□ -1.28
SMC1A-201ENST00000322213 STOX2Q9P2F5 926 aaPredicted RBP7.05□□□□□ -1.28
SMC1A-201ENST00000322213 COG5Q9UP83 839 aa7.05□□□□□ -1.28
SMC1A-201ENST00000322213 GSAPA4D1B5 854 aa7.05□□□□□ -1.28
SMC1A-201ENST00000322213 H3BMM5 538 aa7.05□□□□□ -1.28
SMC1A-201ENST00000322213 CHST10O43529 356 aa7.05□□□□□ -1.28
SMC1A-201ENST00000322213 PSMB4P28070 264 aa7.05□□□□□ -1.28
SMC1A-201ENST00000322213 TAGLNQ01995 201 aaKnown RBP7.05□□□□□ -1.28
SMC1A-201ENST00000322213 PTPN11Q06124 597 aaPredicted RBP7.05□□□□□ -1.28
SMC1A-201ENST00000322213 LDHDQ86WU2 507 aa7.05□□□□□ -1.28
SMC1A-201ENST00000322213 RELL1Q8IUW5 271 aa7.05□□□□□ -1.28
SMC1A-201ENST00000322213 SLC41A1Q8IVJ1 513 aa7.05□□□□□ -1.28
SMC1A-201ENST00000322213 UBA3Q8TBC4 463 aa7.05□□□□□ -1.28
SMC1A-201ENST00000322213 SPPL2AQ8TCT8 520 aa7.05□□□□□ -1.28
SMC1A-201ENST00000322213 ZC3H10Q96K80 434 aaKnown RBP7.05□□□□□ -1.28
SMC1A-201ENST00000322213 MAGEB10Q96LZ2 347 aaPredicted RBP7.05□□□□□ -1.28
SMC1A-201ENST00000322213 APC2O95996 2303 aa7.05□□□□□ -1.28
SMC1A-201ENST00000322213 F8VP50 259 aa7.05□□□□□ -1.28
SMC1A-201ENST00000322213 EIF3FO00303 357 aaPredicted RBP7.05□□□□□ -1.28
SMC1A-201ENST00000322213 RASAL1O95294 804 aa7.05□□□□□ -1.28
SMC1A-201ENST00000322213 SLC2A4P14672 509 aa7.05□□□□□ -1.28
SMC1A-201ENST00000322213 DCAF4L1Q3SXM0 396 aa7.05□□□□□ -1.28
SMC1A-201ENST00000322213 IL31Q6EBC2 164 aa7.05□□□□□ -1.28
SMC1A-201ENST00000322213 ZNF781Q8N8C0 355 aa7.05□□□□□ -1.28
SMC1A-201ENST00000322213 JPH3Q8WXH2 748 aaPredicted RBP7.05□□□□□ -1.28
SMC1A-201ENST00000322213 ZNF285Q96NJ3 590 aa7.05□□□□□ -1.28
SMC1A-201ENST00000322213 ZSCAN5AQ9BUG6 496 aa7.05□□□□□ -1.28
SMC1A-201ENST00000322213 SLC38A7Q9NVC3 462 aa7.05□□□□□ -1.28
SMC1A-201ENST00000322213 UBQLN2Q9UHD9 624 aa7.05□□□□□ -1.28
SMC1A-201ENST00000322213 CNOT11Q9UKZ1 510 aaKnown RBP7.05□□□□□ -1.28
SMC1A-201ENST00000322213 B3GNT3Q9Y2A9 372 aa7.05□□□□□ -1.28
SMC1A-201ENST00000322213 A0A087WZ62 844 aa7.05□□□□□ -1.28
SMC1A-201ENST00000322213 MYL9P24844 172 aa7.05□□□□□ -1.28
SMC1A-201ENST00000322213 STOMP27105 288 aa7.05□□□□□ -1.28
SMC1A-201ENST00000322213 POLR2JP52435 117 aaKnown RBP7.05□□□□□ -1.28
SMC1A-201ENST00000322213 WDR4P57081 412 aaKnown RBP7.05□□□□□ -1.28
SMC1A-201ENST00000322213 ATP6V0D1P61421 351 aa7.05□□□□□ -1.28
SMC1A-201ENST00000322213 FAPQ12884 760 aa7.05□□□□□ -1.28
SMC1A-201ENST00000322213 TTLL4Q14679 1199 aa7.05□□□□□ -1.28
SMC1A-201ENST00000322213 TIGD6Q17RP2 521 aa7.05□□□□□ -1.28
SMC1A-201ENST00000322213 NKD2Q969F2 451 aaPredicted RBP7.05□□□□□ -1.28
SMC1A-201ENST00000322213 PNMA5Q96PV4 448 aa7.05□□□□□ -1.28
SMC1A-201ENST00000322213 KCNN2Q9H2S1 579 aa7.05□□□□□ -1.28
SMC1A-201ENST00000322213 ALG9Q9H6U8 611 aa7.05□□□□□ -1.28
SMC1A-201ENST00000322213 SCUBE2Q9NQ36 999 aa7.05□□□□□ -1.28
SMC1A-201ENST00000322213 PACSIN3Q9UKS6 424 aa7.05□□□□□ -1.28
SMC1A-201ENST00000322213 OGDHLQ9ULD0 1010 aa7.05□□□□□ -1.28
SMC1A-201ENST00000322213 NHSQ6T4R5 1651 aa7.05□□□□□ -1.28
SMC1A-201ENST00000322213 H0YAE9 185 aa7.05□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms