RNA–Protein interactions for RNA: ENST00000303395.8

SCN1A-201, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,533 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-201ENST00000303395 NXF3Q9H4D5 531 aaKnown RBP5.25□□□□□ -1.57
SCN1A-201ENST00000303395 FBXO44Q9H4M3 255 aa5.25□□□□□ -1.57
SCN1A-201ENST00000303395 BLOC1S4Q9NUP1 217 aa5.25□□□□□ -1.57
SCN1A-201ENST00000303395 MAT2BQ9NZL9 334 aa5.25□□□□□ -1.57
SCN1A-201ENST00000303395 CALML5Q9NZT1 146 aa5.25□□□□□ -1.57
SCN1A-201ENST00000303395 MALT1Q9UDY8 824 aa5.25□□□□□ -1.57
SCN1A-201ENST00000303395 ANGPT4Q9Y264 503 aa5.25□□□□□ -1.57
SCN1A-201ENST00000303395 KCNIP3Q9Y2W7 256 aa5.25□□□□□ -1.57
SCN1A-201ENST00000303395 LOC100653049A0A140TA62 436 aa5.24□□□□□ -1.57
SCN1A-201ENST00000303395 TSPAN1O60635 241 aa5.24□□□□□ -1.57
SCN1A-201ENST00000303395 AKAP3O75969 853 aa5.24□□□□□ -1.57
SCN1A-201ENST00000303395 THRBP10828 461 aa5.24□□□□□ -1.57
SCN1A-201ENST00000303395 MMP8P22894 467 aa5.24□□□□□ -1.57
SCN1A-201ENST00000303395 ADRA1DP25100 572 aa5.24□□□□□ -1.57
SCN1A-201ENST00000303395 HOXA10P31260 410 aaPredicted RBP5.24□□□□□ -1.57
SCN1A-201ENST00000303395 HLCSP50747 726 aa5.24□□□□□ -1.57
SCN1A-201ENST00000303395 SLC13A2Q13183 592 aa5.24□□□□□ -1.57
SCN1A-201ENST00000303395 CBLBQ13191 982 aa5.24□□□□□ -1.57
SCN1A-201ENST00000303395 TDGQ13569 410 aa5.24□□□□□ -1.57
SCN1A-201ENST00000303395 GRB14Q14449 540 aa5.24□□□□□ -1.57
SCN1A-201ENST00000303395 EIF4HQ15056 248 aaKnown RBP5.24□□□□□ -1.57
SCN1A-201ENST00000303395 KLHL22Q53GT1 634 aa5.24□□□□□ -1.57
SCN1A-201ENST00000303395 PITRM1Q5JRX3 1037 aa5.24□□□□□ -1.57
SCN1A-201ENST00000303395 RBM44Q6ZP01 1051 aaKnown RBP5.24□□□□□ -1.57
SCN1A-201ENST00000303395 PID1Q7Z2X4 250 aa5.24□□□□□ -1.57
SCN1A-201ENST00000303395 CCDC28AQ8IWP9 274 aa5.24□□□□□ -1.57
SCN1A-201ENST00000303395 METTL25Q8N6Q8 603 aa5.24□□□□□ -1.57
SCN1A-201ENST00000303395 UROC1Q96N76 676 aa5.24□□□□□ -1.57
SCN1A-201ENST00000303395 NTPCRQ9BSD7 190 aaKnown RBP5.24□□□□□ -1.57
SCN1A-201ENST00000303395 ACE2Q9BYF1 805 aaPredicted RBP5.24□□□□□ -1.57
SCN1A-201ENST00000303395 RANBP3Q9H6Z4 567 aaPredicted RBP5.24□□□□□ -1.57
SCN1A-201ENST00000303395 UNKLQ9H9P5 680 aaKnown RBP5.24□□□□□ -1.57
SCN1A-201ENST00000303395 TMEM138Q9NPI0 162 aa5.24□□□□□ -1.57
SCN1A-201ENST00000303395 CD274Q9NZQ7 290 aa5.24□□□□□ -1.57
SCN1A-201ENST00000303395 ACTR3BQ9P1U1 418 aa5.24□□□□□ -1.57
SCN1A-201ENST00000303395 AGAP1Q9UPQ3 857 aa5.24□□□□□ -1.57
SCN1A-201ENST00000303395 BCS1LQ9Y276 419 aa5.24□□□□□ -1.57
SCN1A-201ENST00000303395 B8ZZF3 427 aa5.24□□□□□ -1.57
SCN1A-201ENST00000303395 PTGES3LE9PB15 166 aa5.24□□□□□ -1.57
SCN1A-201ENST00000303395 CACNB4O00305 520 aaPredicted RBP5.24□□□□□ -1.57
SCN1A-201ENST00000303395 ITGB3P05106 788 aa5.24□□□□□ -1.57
SCN1A-201ENST00000303395 CKMT1AP12532 417 aa5.24□□□□□ -1.57
SCN1A-201ENST00000303395 TNNI3P19429 210 aa5.24□□□□□ -1.57
SCN1A-201ENST00000303395 RPS9P46781 194 aaKnown RBP5.24□□□□□ -1.57
SCN1A-201ENST00000303395 TAF6P49848 677 aa5.24□□□□□ -1.57
SCN1A-201ENST00000303395 LIMK2P53671 638 aa5.24□□□□□ -1.57
SCN1A-201ENST00000303395 CACNB3P54284 484 aa5.24□□□□□ -1.57
SCN1A-201ENST00000303395 PER3P56645 1201 aa5.24□□□□□ -1.57
SCN1A-201ENST00000303395 SELPLGQ14242 412 aa5.24□□□□□ -1.57
SCN1A-201ENST00000303395 PROSER3Q2NL68 480 aa5.24□□□□□ -1.57
SCN1A-201ENST00000303395 PLEKHG4Q58EX7 1191 aa5.24□□□□□ -1.57
SCN1A-201ENST00000303395 TOR1AIP1Q5JTV8 583 aa5.24□□□□□ -1.57
SCN1A-201ENST00000303395 KIAA0930Q6ICG6 404 aaPredicted RBP5.24□□□□□ -1.57
SCN1A-201ENST00000303395 TYW3Q6IPR3 259 aaKnown RBP5.24□□□□□ -1.57
SCN1A-201ENST00000303395 TCEAL6Q6IPX3 200 aa5.24□□□□□ -1.57
SCN1A-201ENST00000303395 TRIM40Q6P9F5 258 aa5.24□□□□□ -1.57
SCN1A-201ENST00000303395 MPZL3Q6UWV2 235 aa5.24□□□□□ -1.57
SCN1A-201ENST00000303395 NCCRP1Q6ZVX7 275 aaPredicted RBP5.24□□□□□ -1.57
SCN1A-201ENST00000303395 GPALPP1Q8IXQ4 340 aa5.24□□□□□ -1.57
SCN1A-201ENST00000303395 FITM2Q8N6M3 262 aa5.24□□□□□ -1.57
SCN1A-201ENST00000303395 MCFD2Q8NI22 146 aa5.24□□□□□ -1.57
SCN1A-201ENST00000303395 DNAJC19Q96DA6 116 aa5.24□□□□□ -1.57
SCN1A-201ENST00000303395 SIK2Q9H0K1 926 aa5.24□□□□□ -1.57
SCN1A-201ENST00000303395 CD93Q9NPY3 652 aa5.24□□□□□ -1.57
SCN1A-201ENST00000303395 FAM49BQ9NUQ9 324 aa5.24□□□□□ -1.57
SCN1A-201ENST00000303395 TNS2Q63HR2 1409 aa5.24□□□□□ -1.57
SCN1A-201ENST00000303395 MDFIC2A0A1B0GVS7 189 aa5.24□□□□□ -1.57
SCN1A-201ENST00000303395 RAP2AP10114 183 aa5.24□□□□□ -1.57
SCN1A-201ENST00000303395 CYP51A1Q16850 503 aa5.24□□□□□ -1.57
SCN1A-201ENST00000303395 ANKRD22Q5VYY1 191 aa5.24□□□□□ -1.57
SCN1A-201ENST00000303395 NOTUMQ6P988 496 aa5.24□□□□□ -1.57
SCN1A-201ENST00000303395 ZSCAN2Q7Z7L9 614 aaPredicted RBP5.24□□□□□ -1.57
SCN1A-201ENST00000303395 DAW1Q8N136 415 aa5.24□□□□□ -1.57
SCN1A-201ENST00000303395 C2orf69Q8N8R5 385 aa5.24□□□□□ -1.57
SCN1A-201ENST00000303395 RAET1EQ8TD07 263 aa5.24□□□□□ -1.57
SCN1A-201ENST00000303395 PRCCQ92733 491 aaPredicted RBP5.24□□□□□ -1.57
SCN1A-201ENST00000303395 DDX17Q92841 729 aaKnown RBP5.24□□□□□ -1.57
SCN1A-201ENST00000303395 FAM84BQ96KN1 310 aaPredicted RBP5.24□□□□□ -1.57
SCN1A-201ENST00000303395 MIEF1Q9NQG6 463 aa5.24□□□□□ -1.57
SCN1A-201ENST00000303395 SIRPGQ9P1W8 387 aa5.24□□□□□ -1.57
SCN1A-201ENST00000303395 GTF2IRD1Q9UHL9 959 aa5.24□□□□□ -1.57
SCN1A-201ENST00000303395 PACSIN3Q9UKS6 424 aa5.24□□□□□ -1.57
SCN1A-201ENST00000303395 HEY1Q9Y5J3 304 aa5.24□□□□□ -1.57
SCN1A-201ENST00000303395 RREB1Q92766 1687 aa5.24□□□□□ -1.57
SCN1A-201ENST00000303395 A0A096LPK6 155 aa5.24□□□□□ -1.57
SCN1A-201ENST00000303395 TRIM64CA6NLI5 447 aa5.24□□□□□ -1.57
SCN1A-201ENST00000303395 MCIDASD6RGH6 385 aa5.24□□□□□ -1.57
SCN1A-201ENST00000303395 KCNK1O00180 336 aa5.24□□□□□ -1.57
SCN1A-201ENST00000303395 GRID2O43424 1007 aa5.24□□□□□ -1.57
SCN1A-201ENST00000303395 HCN1O60741 890 aa5.24□□□□□ -1.57
SCN1A-201ENST00000303395 GATBO75879 557 aaKnown RBP5.24□□□□□ -1.57
SCN1A-201ENST00000303395 OR6B1O95007 311 aa5.24□□□□□ -1.57
SCN1A-201ENST00000303395 AGR2O95994 175 aa5.24□□□□□ -1.57
SCN1A-201ENST00000303395 BMP2P12643 396 aa5.24□□□□□ -1.57
SCN1A-201ENST00000303395 CYP3A5P20815 502 aa5.24□□□□□ -1.57
SCN1A-201ENST00000303395 HSD17B2P37059 387 aa5.24□□□□□ -1.57
SCN1A-201ENST00000303395 MNDAP41218 407 aa5.24□□□□□ -1.57
SCN1A-201ENST00000303395 RGS6P49758 472 aa5.24□□□□□ -1.57
SCN1A-201ENST00000303395 HUNKP57058 714 aa5.24□□□□□ -1.57
SCN1A-201ENST00000303395 ARL6IP1Q15041 203 aa5.24□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms