RNA–Protein interactions for RNA: ENST00000298281.8

PCF11-201, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PCF11, Length 7,677 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-201ENST00000298281 TBC1D3Q8IZP1 549 aaPredicted RBP12.06□□□□□ -0.48
PCF11-201ENST00000298281 TMEM161BQ8NDZ6 487 aa12.06□□□□□ -0.48
PCF11-201ENST00000298281 DNAJB3Q8WWF6 145 aa12.06□□□□□ -0.48
PCF11-201ENST00000298281 GATAD2BQ8WXI9 593 aa12.06□□□□□ -0.48
PCF11-201ENST00000298281 ARHGAP20Q9P2F6 1191 aa12.06□□□□□ -0.48
PCF11-201ENST00000298281 MFHAS1Q9Y4C4 1052 aa12.06□□□□□ -0.48
PCF11-201ENST00000298281 DUSP10Q9Y6W6 482 aa12.06□□□□□ -0.48
PCF11-201ENST00000298281 CASZ1Q86V15 1759 aa12.06□□□□□ -0.48
PCF11-201ENST00000298281 ZNF286BP0CG31 522 aa12.06□□□□□ -0.48
PCF11-201ENST00000298281 CHKAP35790 457 aa12.06□□□□□ -0.48
PCF11-201ENST00000298281 IRF8Q02556 426 aa12.06□□□□□ -0.48
PCF11-201ENST00000298281 C8orf59Q8N0T1 100 aaPredicted RBP12.06□□□□□ -0.48
PCF11-201ENST00000298281 FNIP1Q8TF40 1166 aa12.06□□□□□ -0.48
PCF11-201ENST00000298281 B3GALT6Q96L58 329 aa12.06□□□□□ -0.48
PCF11-201ENST00000298281 SEMA4AQ9H3S1 761 aa12.06□□□□□ -0.48
PCF11-201ENST00000298281 SLC12A3P55017 1021 aa12.06□□□□□ -0.48
PCF11-201ENST00000298281 PCID2Q5JVF3 399 aa12.06□□□□□ -0.48
PCF11-201ENST00000298281 PPP1R26Q5T8A7 1209 aaPredicted RBP12.06□□□□□ -0.48
PCF11-201ENST00000298281 GPR139Q6DWJ6 353 aa12.06□□□□□ -0.48
PCF11-201ENST00000298281 DEF8Q6ZN54 512 aa12.06□□□□□ -0.48
PCF11-201ENST00000298281 ZNF366Q8N895 744 aa12.06□□□□□ -0.48
PCF11-201ENST00000298281 COPS4Q9BT78 406 aa12.06□□□□□ -0.48
PCF11-201ENST00000298281 TARBP1Q13395 1621 aaKnown RBP12.06□□□□□ -0.48
PCF11-201ENST00000298281 CLEC3AO75596 197 aa12.06□□□□□ -0.48
PCF11-201ENST00000298281 IL33O95760 270 aa12.06□□□□□ -0.48
PCF11-201ENST00000298281 CD44P16070 742 aaKnown RBP12.06□□□□□ -0.48
PCF11-201ENST00000298281 OC90Q02509 493 aaPredicted RBP12.06□□□□□ -0.48
PCF11-201ENST00000298281 MED22Q15528 200 aa12.06□□□□□ -0.48
PCF11-201ENST00000298281 ALG10BQ5I7T1 473 aa12.06□□□□□ -0.48
PCF11-201ENST00000298281 KLHL35Q6PF15 583 aa12.06□□□□□ -0.48
PCF11-201ENST00000298281 ZNF276Q8N554 614 aa12.06□□□□□ -0.48
PCF11-201ENST00000298281 PPP3R2Q96LZ3 170 aa12.06□□□□□ -0.48
PCF11-201ENST00000298281 ZSCAN5AQ9BUG6 496 aa12.06□□□□□ -0.48
PCF11-201ENST00000298281 AP1M2Q9Y6Q5 423 aa12.06□□□□□ -0.48
PCF11-201ENST00000298281 FRMPD4Q14CM0 1322 aa12.06□□□□□ -0.48
PCF11-201ENST00000298281 SPATA31A5Q5VU36 1347 aa12.06□□□□□ -0.48
PCF11-201ENST00000298281 SPATA31A7Q8IWB4 1347 aa12.06□□□□□ -0.48
PCF11-201ENST00000298281 INO80Q9ULG1 1556 aaPredicted RBP12.06□□□□□ -0.48
PCF11-201ENST00000298281 TLX3O43711 291 aaPredicted RBP12.06□□□□□ -0.48
PCF11-201ENST00000298281 MAGEC1O60732 1142 aa12.06□□□□□ -0.48
PCF11-201ENST00000298281 ERAL1O75616 437 aaKnown RBP12.06□□□□□ -0.48
PCF11-201ENST00000298281 UQCRC1P31930 480 aa12.06□□□□□ -0.48
PCF11-201ENST00000298281 RPL14P50914 215 aaKnown RBP12.06□□□□□ -0.48
PCF11-201ENST00000298281 IL18R1Q13478 541 aa12.06□□□□□ -0.48
PCF11-201ENST00000298281 TLR1Q15399 786 aa12.06□□□□□ -0.48
PCF11-201ENST00000298281 HMBOX1Q6NT76 420 aa12.06□□□□□ -0.48
PCF11-201ENST00000298281 TMC3Q7Z5M5 1100 aa12.06□□□□□ -0.48
PCF11-201ENST00000298281 PSTKQ8IV42 348 aaKnown RBP12.06□□□□□ -0.48
PCF11-201ENST00000298281 SLC5A5Q92911 643 aa12.06□□□□□ -0.48
PCF11-201ENST00000298281 POU2F3Q9UKI9 436 aa12.06□□□□□ -0.48
PCF11-201ENST00000298281 HCN1O60741 890 aa12.06□□□□□ -0.48
PCF11-201ENST00000298281 ITIH1P19827 911 aa12.06□□□□□ -0.48
PCF11-201ENST00000298281 XKR4Q5GH76 650 aa12.06□□□□□ -0.48
PCF11-201ENST00000298281 PGM2L1Q6PCE3 622 aa12.06□□□□□ -0.48
PCF11-201ENST00000298281 ZNF730Q6ZMV8 503 aa12.06□□□□□ -0.48
PCF11-201ENST00000298281 TTC7BQ86TV6 843 aa12.06□□□□□ -0.48
PCF11-201ENST00000298281 ALLCQ8N6M5 410 aa12.06□□□□□ -0.48
PCF11-201ENST00000298281 SPATA20Q8TB22 786 aa12.06□□□□□ -0.48
PCF11-201ENST00000298281 PGM2Q96G03 612 aa12.06□□□□□ -0.48
PCF11-201ENST00000298281 ZNF607Q96SK3 696 aa12.06□□□□□ -0.48
PCF11-201ENST00000298281 CORO1BQ9BR76 489 aa12.06□□□□□ -0.48
PCF11-201ENST00000298281 CD248Q9HCU0 757 aa12.06□□□□□ -0.48
PCF11-201ENST00000298281 HPF1Q9NWY4 346 aa12.06□□□□□ -0.48
PCF11-201ENST00000298281 KLQ9UEF7 1012 aa12.06□□□□□ -0.48
PCF11-201ENST00000298281 METTL18O95568 372 aa12.05□□□□□ -0.48
PCF11-201ENST00000298281 PRKG2Q13237 762 aa12.05□□□□□ -0.48
PCF11-201ENST00000298281 ZNF234Q14588 700 aa12.05□□□□□ -0.48
PCF11-201ENST00000298281 PLA2G4EQ3MJ16 856 aa12.05□□□□□ -0.48
PCF11-201ENST00000298281 QSOX2Q6ZRP7 698 aa12.05□□□□□ -0.48
PCF11-201ENST00000298281 NAXEQ8NCW5 288 aa12.05□□□□□ -0.48
PCF11-201ENST00000298281 ZNF548Q8NEK5 533 aaPredicted RBP12.05□□□□□ -0.48
PCF11-201ENST00000298281 ACMSDQ8TDX5 336 aa12.05□□□□□ -0.48
PCF11-201ENST00000298281 WNT8BQ93098 351 aa12.05□□□□□ -0.48
PCF11-201ENST00000298281 POMKQ9H5K3 350 aa12.05□□□□□ -0.48
PCF11-201ENST00000298281 XPNPEP3Q9NQH7 507 aa12.05□□□□□ -0.48
PCF11-201ENST00000298281 ZNF224Q9NZL3 707 aa12.05□□□□□ -0.48
PCF11-201ENST00000298281 C3orf18Q9UK00 162 aa12.05□□□□□ -0.48
PCF11-201ENST00000298281 USP20Q9Y2K6 914 aa12.05□□□□□ -0.48
PCF11-201ENST00000298281 MYH15Q9Y2K3 1946 aa12.05□□□□□ -0.48
PCF11-201ENST00000298281 FTH1P02794 183 aa12.05□□□□□ -0.48
PCF11-201ENST00000298281 AMPD1P23109 780 aa12.05□□□□□ -0.48
PCF11-201ENST00000298281 SLC1A2P43004 574 aa12.05□□□□□ -0.48
PCF11-201ENST00000298281 CLCN5P51795 746 aa12.05□□□□□ -0.48
PCF11-201ENST00000298281 ITPK1Q13572 414 aa12.05□□□□□ -0.48
PCF11-201ENST00000298281 THAP5Q7Z6K1 395 aa12.05□□□□□ -0.48
PCF11-201ENST00000298281 DEFB106AQ8N104 65 aa12.05□□□□□ -0.48
PCF11-201ENST00000298281 POC5Q8NA72 575 aa12.05□□□□□ -0.48
PCF11-201ENST00000298281 ZSWIM2Q8NEG5 633 aa12.05□□□□□ -0.48
PCF11-201ENST00000298281 OR7A2PQ8NGA2 310 aa12.05□□□□□ -0.48
PCF11-201ENST00000298281 SLC2A14Q8TDB8 520 aa12.05□□□□□ -0.48
PCF11-201ENST00000298281 PTCD3Q96EY7 689 aaKnown RBP12.05□□□□□ -0.48
PCF11-201ENST00000298281 HSFY1Q96LI6 401 aa12.05□□□□□ -0.48
PCF11-201ENST00000298281 TKTL2Q9H0I9 626 aa12.05□□□□□ -0.48
PCF11-201ENST00000298281 CDHR5Q9HBB8 845 aa12.05□□□□□ -0.48
PCF11-201ENST00000298281 HMX1Q9NP08 348 aaPredicted RBP12.05□□□□□ -0.48
PCF11-201ENST00000298281 TFR2Q9UP52 801 aa12.05□□□□□ -0.48
PCF11-201ENST00000298281 C5orf51A6NDU8 294 aa12.05□□□□□ -0.48
PCF11-201ENST00000298281 RAB4AP20338 218 aa12.05□□□□□ -0.48
PCF11-201ENST00000298281 MANFP55145 182 aaKnown RBP12.05□□□□□ -0.48
PCF11-201ENST00000298281 LSM3P62310 102 aaKnown RBP12.05□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 58 ms