RNA–Protein interactions for RNA: ENST00000293441.5

SHANK1-201, Transcript of SH3 and multiple ankyrin repeat domains 1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene SHANK1, Length 6,643 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1-201ENST00000293441 SLC38A2Q96QD8 506 aa17.28■□□□□ 0.36
SHANK1-201ENST00000293441 NIFKQ9BYG3 293 aaKnown RBP17.28■□□□□ 0.36
SHANK1-201ENST00000293441 ZMYND8Q9ULU4 1186 aaPredicted RBP17.28■□□□□ 0.36
SHANK1-201ENST00000293441 ACTL7BQ9Y614 415 aa17.28■□□□□ 0.36
SHANK1-201ENST00000293441 CLUHO75153 1309 aa17.28■□□□□ 0.36
SHANK1-201ENST00000293441 ATXN2Q99700 1313 aaKnown RBP17.28■□□□□ 0.36
SHANK1-201ENST00000293441 LOC102724159A0A0B4J2E5 919 aa17.28■□□□□ 0.36
SHANK1-201ENST00000293441 TCRBV9S1A1TA0A576 114 aa17.28■□□□□ 0.36
SHANK1-201ENST00000293441 GPR25O00155 361 aa17.28■□□□□ 0.36
SHANK1-201ENST00000293441 MED26O95402 600 aa17.28■□□□□ 0.36
SHANK1-201ENST00000293441 RPL17P18621 184 aaKnown RBP17.28■□□□□ 0.36
SHANK1-201ENST00000293441 EPHA3P29320 983 aa17.28■□□□□ 0.36
SHANK1-201ENST00000293441 BST1Q10588 318 aa17.28■□□□□ 0.36
SHANK1-201ENST00000293441 PWP2Q15269 919 aaKnown RBP17.28■□□□□ 0.36
SHANK1-201ENST00000293441 BPIFB6Q8NFQ5 453 aa17.28■□□□□ 0.36
SHANK1-201ENST00000293441 CLP1Q92989 425 aaKnown RBP17.28■□□□□ 0.36
SHANK1-201ENST00000293441 TRIM8Q9BZR9 551 aa17.28■□□□□ 0.36
SHANK1-201ENST00000293441 IKZF3Q9UKT9 509 aa17.28■□□□□ 0.36
SHANK1-201ENST00000293441 H3BM21 787 aa17.28■□□□□ 0.36
SHANK1-201ENST00000293441 ITGA2P17301 1181 aa17.28■□□□□ 0.36
SHANK1-201ENST00000293441 CDH13P55290 713 aa17.28■□□□□ 0.36
SHANK1-201ENST00000293441 MBTD1Q05BQ5 628 aa17.28■□□□□ 0.36
SHANK1-201ENST00000293441 ANXA8L1Q5VT79 327 aa17.28■□□□□ 0.36
SHANK1-201ENST00000293441 BTN2A1Q7KYR7 527 aa17.28■□□□□ 0.36
SHANK1-201ENST00000293441 SESN1Q9Y6P5 492 aa17.28■□□□□ 0.36
SHANK1-201ENST00000293441 ITGAXP20702 1163 aa17.28■□□□□ 0.36
SHANK1-201ENST00000293441 ARL2P36404 184 aa17.28■□□□□ 0.36
SHANK1-201ENST00000293441 ITGA1P56199 1179 aa17.28■□□□□ 0.36
SHANK1-201ENST00000293441 PSME3P61289 254 aa17.28■□□□□ 0.36
SHANK1-201ENST00000293441 TNK2Q07912 1038 aa17.28■□□□□ 0.36
SHANK1-201ENST00000293441 MSL3Q8N5Y2 521 aaKnown RBP17.28■□□□□ 0.36
SHANK1-201ENST00000293441 ARL14EPQ8N8R7 260 aaPredicted RBP17.28■□□□□ 0.36
SHANK1-201ENST00000293441 ZNF563Q8TA94 476 aa17.28■□□□□ 0.36
SHANK1-201ENST00000293441 IPCEF1Q8WWN9 437 aaPredicted RBP17.28■□□□□ 0.36
SHANK1-201ENST00000293441 OSER1Q9NX31 292 aa17.28■□□□□ 0.36
SHANK1-201ENST00000293441 PAIP2BQ9ULR5 123 aaKnown RBP17.28■□□□□ 0.36
SHANK1-201ENST00000293441 RGSL1A5PLK6 1076 aa17.28■□□□□ 0.36
SHANK1-201ENST00000293441 LGR5O75473 907 aa17.28■□□□□ 0.36
SHANK1-201ENST00000293441 LYPLA1O75608 230 aaPredicted RBP17.28■□□□□ 0.36
SHANK1-201ENST00000293441 BMP7P18075 431 aa17.28■□□□□ 0.36
SHANK1-201ENST00000293441 LPIN1Q14693 890 aa17.28■□□□□ 0.36
SHANK1-201ENST00000293441 PRSS55Q6UWB4 352 aaPredicted RBP17.28■□□□□ 0.36
SHANK1-201ENST00000293441 PIWIL4Q7Z3Z4 852 aaKnown RBP17.28■□□□□ 0.36
SHANK1-201ENST00000293441 DLG3Q92796 817 aa17.28■□□□□ 0.36
SHANK1-201ENST00000293441 NMUR1Q9HB89 426 aa17.28■□□□□ 0.36
SHANK1-201ENST00000293441 SOWAHBA6NEL2 793 aa17.27■□□□□ 0.36
SHANK1-201ENST00000293441 SCAMP1O15126 338 aa17.27■□□□□ 0.36
SHANK1-201ENST00000293441 UGT2B15P54855 530 aa17.27■□□□□ 0.36
SHANK1-201ENST00000293441 TAS2R41P59536 307 aa17.27■□□□□ 0.36
SHANK1-201ENST00000293441 PPP2R2DQ66LE6 453 aa17.27■□□□□ 0.36
SHANK1-201ENST00000293441 PCED1BQ96HM7 432 aa17.27■□□□□ 0.36
SHANK1-201ENST00000293441 OR10H3O60404 316 aa17.27■□□□□ 0.36
SHANK1-201ENST00000293441 PTPN2P17706 415 aa17.27■□□□□ 0.36
SHANK1-201ENST00000293441 SPAM1P38567 509 aa17.27■□□□□ 0.36
SHANK1-201ENST00000293441 MYBPC1Q00872 1141 aa17.27■□□□□ 0.36
SHANK1-201ENST00000293441 ELP6Q0PNE2 266 aa17.27■□□□□ 0.36
SHANK1-201ENST00000293441 NDUFAF6Q330K2 333 aa17.27■□□□□ 0.36
SHANK1-201ENST00000293441 TEX44Q53QW1 395 aa17.27■□□□□ 0.36
SHANK1-201ENST00000293441 C12orf56Q8IXR9 622 aa17.27■□□□□ 0.36
SHANK1-201ENST00000293441 CLHC1Q8NHS4 586 aa17.27■□□□□ 0.36
SHANK1-201ENST00000293441 LMAN2LQ9H0V9 348 aa17.27■□□□□ 0.36
SHANK1-201ENST00000293441 KCTD5Q9NXV2 234 aa17.27■□□□□ 0.36
SHANK1-201ENST00000293441 COL20A1Q9P218 1284 aa17.27■□□□□ 0.36
SHANK1-201ENST00000293441 ZNF490Q9ULM2 529 aaPredicted RBP17.27■□□□□ 0.36
SHANK1-201ENST00000293441 MRPS33Q9Y291 106 aaKnown RBP17.27■□□□□ 0.36
SHANK1-201ENST00000293441 MAFBQ9Y5Q3 323 aaPredicted RBP17.27■□□□□ 0.36
SHANK1-201ENST00000293441 TRIM40Q6P9F5 258 aa17.27■□□□□ 0.36
SHANK1-201ENST00000293441 KLHL17Q6TDP4 642 aa17.27■□□□□ 0.36
SHANK1-201ENST00000293441 MPP4Q96JB8 637 aa17.27■□□□□ 0.36
SHANK1-201ENST00000293441 LMLNQ96KR4 655 aa17.27■□□□□ 0.36
SHANK1-201ENST00000293441 CDK14O94921 469 aa17.27■□□□□ 0.36
SHANK1-201ENST00000293441 GABRB2P47870 512 aa17.27■□□□□ 0.36
SHANK1-201ENST00000293441 VARS2Q5ST30 1063 aaKnown RBP17.27■□□□□ 0.36
SHANK1-201ENST00000293441 HECTD2Q5U5R9 776 aa17.27■□□□□ 0.36
SHANK1-201ENST00000293441 TAF8Q7Z7C8 310 aa17.27■□□□□ 0.36
SHANK1-201ENST00000293441 NRSN1Q8IZ57 195 aa17.27■□□□□ 0.36
SHANK1-201ENST00000293441 AIF1LQ9BQI0 150 aa17.27■□□□□ 0.36
SHANK1-201ENST00000293441 BRINP2Q9C0B6 783 aa17.27■□□□□ 0.36
SHANK1-201ENST00000293441 GSTK1Q9Y2Q3 226 aa17.27■□□□□ 0.36
SHANK1-201ENST00000293441 GMPPBQ9Y5P6 360 aa17.27■□□□□ 0.36
SHANK1-201ENST00000293441 SNX10Q9Y5X0 201 aa17.27■□□□□ 0.36
SHANK1-201ENST00000293441 PALM2-AKAP2B1ALY0 433 aaPredicted RBP17.27■□□□□ 0.35
SHANK1-201ENST00000293441 DSC2Q02487 901 aa17.27■□□□□ 0.35
SHANK1-201ENST00000293441 APLFQ8IW19 511 aaPredicted RBP17.27■□□□□ 0.35
SHANK1-201ENST00000293441 ZBTB2Q8N680 514 aa17.27■□□□□ 0.35
SHANK1-201ENST00000293441 C1orf127Q8N9H9 656 aa17.27■□□□□ 0.35
SHANK1-201ENST00000293441 ZNF607Q96SK3 696 aa17.27■□□□□ 0.35
SHANK1-201ENST00000293441 CST1P01037 141 aa17.26■□□□□ 0.35
SHANK1-201ENST00000293441 SLC6A2P23975 617 aa17.26■□□□□ 0.35
SHANK1-201ENST00000293441 POMZP3Q6PJE2 187 aa17.26■□□□□ 0.35
SHANK1-201ENST00000293441 SPESP1Q6UW49 350 aa17.26■□□□□ 0.35
SHANK1-201ENST00000293441 ARHGAP36Q6ZRI8 547 aa17.26■□□□□ 0.35
SHANK1-201ENST00000293441 FAM129CQ86XR2 697 aa17.26■□□□□ 0.35
SHANK1-201ENST00000293441 GALNT13Q8IUC8 556 aa17.26■□□□□ 0.35
SHANK1-201ENST00000293441 CFAP206Q8IYR0 622 aa17.26■□□□□ 0.35
SHANK1-201ENST00000293441 OGDHLQ9ULD0 1010 aa17.26■□□□□ 0.35
SHANK1-201ENST00000293441 TNFRSF8P28908 595 aa17.26■□□□□ 0.35
SHANK1-201ENST00000293441 ATP1A4Q13733 1029 aa17.26■□□□□ 0.35
SHANK1-201ENST00000293441 DGUOKQ16854 277 aa17.26■□□□□ 0.35
SHANK1-201ENST00000293441 ARCQ7LC44 396 aa17.26■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms