RNA–Protein interactions for RNA: ENST00000249837.7

VPS13C-201, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VPS13C, Length 13,300 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-201ENST00000249837 USE1Q9NZ43 259 aa4.61□□□□□ -1.67
VPS13C-201ENST00000249837 TRPM5Q9NZQ8 1165 aa4.61□□□□□ -1.67
VPS13C-201ENST00000249837 SH3BP4Q9P0V3 963 aa4.61□□□□□ -1.67
VPS13C-201ENST00000249837 RNASEH2AO75792 299 aaKnown RBP4.61□□□□□ -1.67
VPS13C-201ENST00000249837 CLIC3O95833 236 aa4.61□□□□□ -1.67
VPS13C-201ENST00000249837 MMP3P08254 477 aa4.61□□□□□ -1.67
VPS13C-201ENST00000249837 OR4Q2P0C623 313 aa4.61□□□□□ -1.67
VPS13C-201ENST00000249837 RPL9P32969 192 aaKnown RBP4.61□□□□□ -1.67
VPS13C-201ENST00000249837 TNK2Q07912 1038 aa4.61□□□□□ -1.67
VPS13C-201ENST00000249837 MADCAM1Q13477 382 aa4.61□□□□□ -1.67
VPS13C-201ENST00000249837 C11orf96Q7Z7L8 435 aa4.61□□□□□ -1.67
VPS13C-201ENST00000249837 C14orf80Q86SX3 495 aa4.61□□□□□ -1.67
VPS13C-201ENST00000249837 DDX53Q86TM3 631 aaKnown RBP4.61□□□□□ -1.67
VPS13C-201ENST00000249837 EID3Q8N140 333 aa4.61□□□□□ -1.67
VPS13C-201ENST00000249837 SCAMP5Q8TAC9 235 aa4.61□□□□□ -1.67
VPS13C-201ENST00000249837 RHOBTB2Q9BYZ6 727 aa4.61□□□□□ -1.67
VPS13C-201ENST00000249837 KCTD3Q9Y597 815 aa4.61□□□□□ -1.67
VPS13C-201ENST00000249837 RGS5O15539 181 aa4.61□□□□□ -1.67
VPS13C-201ENST00000249837 TYMPP19971 482 aa4.61□□□□□ -1.67
VPS13C-201ENST00000249837 HALP42357 657 aa4.61□□□□□ -1.67
VPS13C-201ENST00000249837 MTHFRP42898 656 aa4.61□□□□□ -1.67
VPS13C-201ENST00000249837 MTPNP58546 118 aa4.61□□□□□ -1.67
VPS13C-201ENST00000249837 SLC10A2Q12908 348 aaPredicted RBP4.61□□□□□ -1.67
VPS13C-201ENST00000249837 PLD1Q13393 1074 aa4.61□□□□□ -1.67
VPS13C-201ENST00000249837 FAM45BPQ6NSW5 357 aa4.61□□□□□ -1.67
VPS13C-201ENST00000249837 TTC23LQ6PF05 361 aa4.61□□□□□ -1.67
VPS13C-201ENST00000249837 SPESP1Q6UW49 350 aa4.61□□□□□ -1.67
VPS13C-201ENST00000249837 ADCK2Q7Z695 626 aa4.61□□□□□ -1.67
VPS13C-201ENST00000249837 OR9I1Q8NGQ6 314 aa4.61□□□□□ -1.67
VPS13C-201ENST00000249837 FAM45AQ8TCE6 357 aa4.61□□□□□ -1.67
VPS13C-201ENST00000249837 TWIST2Q8WVJ9 160 aa4.61□□□□□ -1.67
VPS13C-201ENST00000249837 TEPSINQ96N21 525 aa4.61□□□□□ -1.67
VPS13C-201ENST00000249837 ZYG11BQ9C0D3 744 aa4.61□□□□□ -1.67
VPS13C-201ENST00000249837 REXO4Q9GZR2 422 aaKnown RBP4.61□□□□□ -1.67
VPS13C-201ENST00000249837 PTTG2Q9NZH5 202 aa4.61□□□□□ -1.67
VPS13C-201ENST00000249837 SLC8A2Q9UPR5 921 aa4.61□□□□□ -1.67
VPS13C-201ENST00000249837 C10orf71Q711Q0 1435 aa4.61□□□□□ -1.67
VPS13C-201ENST00000249837 SCN7AQ01118 1682 aa4.61□□□□□ -1.67
VPS13C-201ENST00000249837 PGK1P00558 417 aa4.61□□□□□ -1.67
VPS13C-201ENST00000249837 CAPGP40121 348 aa4.61□□□□□ -1.67
VPS13C-201ENST00000249837 CRYBB1P53674 252 aaPredicted RBP4.61□□□□□ -1.67
VPS13C-201ENST00000249837 NAA20P61599 178 aa4.61□□□□□ -1.67
VPS13C-201ENST00000249837 NCBP2-AS2Q69YL0 99 aa4.61□□□□□ -1.67
VPS13C-201ENST00000249837 ANKRD46Q86W74 232 aa4.61□□□□□ -1.67
VPS13C-201ENST00000249837 OR4L1Q8NH43 312 aa4.61□□□□□ -1.67
VPS13C-201ENST00000249837 ADGRE2Q9UHX3 823 aa4.61□□□□□ -1.67
VPS13C-201ENST00000249837 SF3B1O75533 1304 aaKnown RBP eCLIP4.61□□□□□ -1.678e-6■■■■■ 94.3
VPS13C-201ENST00000249837 IPO13O94829 963 aaKnown RBP4.61□□□□□ -1.67
VPS13C-201ENST00000249837 SIX3O95343 332 aaPredicted RBP4.61□□□□□ -1.67
VPS13C-201ENST00000249837 LPOP22079 712 aaPredicted RBP4.61□□□□□ -1.67
VPS13C-201ENST00000249837 DSC2Q02487 901 aa4.61□□□□□ -1.67
VPS13C-201ENST00000249837 CCDC142Q17RM4 750 aa4.61□□□□□ -1.67
VPS13C-201ENST00000249837 ZCCHC8Q6NZY4 707 aaKnown RBP4.61□□□□□ -1.67
VPS13C-201ENST00000249837 CRTC3Q6UUV7 619 aa4.61□□□□□ -1.67
VPS13C-201ENST00000249837 OR7D4Q8NG98 312 aa4.61□□□□□ -1.67
VPS13C-201ENST00000249837 LZICQ8WZA0 190 aa4.61□□□□□ -1.67
VPS13C-201ENST00000249837 CNTN6Q9UQ52 1028 aa4.61□□□□□ -1.67
VPS13C-201ENST00000249837 NRCAMQ92823 1304 aa4.61□□□□□ -1.67
VPS13C-201ENST00000249837 CBFA2T3O75081 653 aa4.61□□□□□ -1.67
VPS13C-201ENST00000249837 ABCB1P08183 1280 aaPredicted RBP4.61□□□□□ -1.67
VPS13C-201ENST00000249837 THRBP10828 461 aa4.61□□□□□ -1.67
VPS13C-201ENST00000249837 CYP2C18P33260 490 aa4.61□□□□□ -1.67
VPS13C-201ENST00000249837 TTC23Q5W5X9 447 aa4.61□□□□□ -1.67
VPS13C-201ENST00000249837 NECAB2Q7Z6G3 386 aa4.61□□□□□ -1.67
VPS13C-201ENST00000249837 MCFD2Q8NI22 146 aa4.61□□□□□ -1.67
VPS13C-201ENST00000249837 SH3KBP1Q96B97 665 aa4.61□□□□□ -1.67
VPS13C-201ENST00000249837 TEKT5Q96M29 485 aa4.61□□□□□ -1.67
VPS13C-201ENST00000249837 TINF2Q9BSI4 451 aa4.61□□□□□ -1.67
VPS13C-201ENST00000249837 KCNK13Q9HB14 408 aa4.61□□□□□ -1.67
VPS13C-201ENST00000249837 PNPLA8Q9NP80 782 aa4.61□□□□□ -1.67
VPS13C-201ENST00000249837 TIMMDC1Q9NPL8 285 aa4.61□□□□□ -1.67
VPS13C-201ENST00000249837 IGSF9Q9P2J2 1179 aa4.61□□□□□ -1.67
VPS13C-201ENST00000249837 FBXW11Q9UKB1 542 aa4.61□□□□□ -1.67
VPS13C-201ENST00000249837 TMCC3Q9ULS5 477 aa4.61□□□□□ -1.67
VPS13C-201ENST00000249837 RUNX1T1Q06455 604 aa4.61□□□□□ -1.67
VPS13C-201ENST00000249837 FAM43BQ6ZT52 329 aaPredicted RBP4.61□□□□□ -1.67
VPS13C-201ENST00000249837 STX19Q8N4C7 294 aa4.61□□□□□ -1.67
VPS13C-201ENST00000249837 OR6K2Q8NGY2 324 aa4.61□□□□□ -1.67
VPS13C-201ENST00000249837 MAPK15Q8TD08 544 aa4.61□□□□□ -1.67
VPS13C-201ENST00000249837 HNRNPABQ99729 332 aaKnown RBP4.61□□□□□ -1.67
VPS13C-201ENST00000249837 DHRS4Q9BTZ2 278 aa4.61□□□□□ -1.67
VPS13C-201ENST00000249837 REEP1Q9H902 201 aa4.61□□□□□ -1.67
VPS13C-201ENST00000249837 EIF2B3Q9NR50 452 aaKnown RBP4.61□□□□□ -1.67
VPS13C-201ENST00000249837 VPS45Q9NRW7 570 aa4.61□□□□□ -1.67
VPS13C-201ENST00000249837 PTGDR2Q9Y5Y4 395 aa4.61□□□□□ -1.67
VPS13C-201ENST00000249837 SLC1A2P43004 574 aa4.61□□□□□ -1.67
VPS13C-201ENST00000249837 CPSF6Q16630 551 aaKnown RBP eCLIP4.61□□□□□ -1.67
VPS13C-201ENST00000249837 TMEM214Q6NUQ4 689 aaKnown RBP4.61□□□□□ -1.67
VPS13C-201ENST00000249837 LINGO4Q6UY18 593 aa4.61□□□□□ -1.67
VPS13C-201ENST00000249837 KCTD8Q6ZWB6 473 aa4.61□□□□□ -1.67
VPS13C-201ENST00000249837 TBC1D21Q8IYX1 336 aa4.61□□□□□ -1.67
VPS13C-201ENST00000249837 C8orf59Q8N0T1 100 aaPredicted RBP4.61□□□□□ -1.67
VPS13C-201ENST00000249837 ARFGAP1Q8N6T3 406 aa4.61□□□□□ -1.67
VPS13C-201ENST00000249837 MED8Q96G25 268 aa4.61□□□□□ -1.67
VPS13C-201ENST00000249837 OSBPL6Q9BZF3 934 aa4.61□□□□□ -1.67
VPS13C-201ENST00000249837 TXNRD2Q9NNW7 524 aa4.61□□□□□ -1.67
VPS13C-201ENST00000249837 ABCC13Q9NSE7 274 aa4.61□□□□□ -1.67
VPS13C-201ENST00000249837 SNX8Q9Y5X2 465 aa4.61□□□□□ -1.67
VPS13C-201ENST00000249837 TP73O15350 636 aa4.61□□□□□ -1.67
VPS13C-201ENST00000249837 BCAS2O75934 225 aaPredicted RBP4.61□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms