RNA–Protein interactions for RNA: ENST00000238112.7

CPSF3-201, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF3, Length 2,345 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-201ENST00000238112 PATJQ8NI35 1801 aa18.71■□□□□ 0.59
CPSF3-201ENST00000238112 A0A1B0GTW7 788 aa18.71■□□□□ 0.59
CPSF3-201ENST00000238112 AZIN1O14977 448 aa18.71■□□□□ 0.59
CPSF3-201ENST00000238112 PIP5K1BO14986 540 aa18.71■□□□□ 0.59
CPSF3-201ENST00000238112 ANGPT2O15123 496 aa18.71■□□□□ 0.59
CPSF3-201ENST00000238112 CDK14O94921 469 aa18.71■□□□□ 0.59
CPSF3-201ENST00000238112 GOT2P00505 430 aaKnown RBP18.71■□□□□ 0.59
CPSF3-201ENST00000238112 FKBP1BP68106 108 aa18.71■□□□□ 0.59
CPSF3-201ENST00000238112 PFKFB4Q16877 469 aa18.71■□□□□ 0.59
CPSF3-201ENST00000238112 ALDH16A1Q8IZ83 802 aa18.71■□□□□ 0.59
CPSF3-201ENST00000238112 ARRDC2Q8TBH0 407 aa18.71■□□□□ 0.59
CPSF3-201ENST00000238112 DNAJC1Q96KC8 554 aaKnown RBP18.71■□□□□ 0.59
CPSF3-201ENST00000238112 DDX18Q9NVP1 670 aaKnown RBP18.71■□□□□ 0.59
CPSF3-201ENST00000238112 ARMC1Q9NVT9 282 aa18.71■□□□□ 0.59
CPSF3-201ENST00000238112 POLR3BQ9NW08 1133 aaPredicted RBP18.71■□□□□ 0.59
CPSF3-201ENST00000238112 LOC285095A0A1B0GVY8 99 aa18.71■□□□□ 0.58
CPSF3-201ENST00000238112 GLTPD2A6NH11 291 aa18.71■□□□□ 0.58
CPSF3-201ENST00000238112 UBXN8O00124 270 aa18.71■□□□□ 0.58
CPSF3-201ENST00000238112 CD3EAPO15446 510 aaKnown RBP18.71■□□□□ 0.58
CPSF3-201ENST00000238112 HTRA2O43464 458 aaPredicted RBP18.71■□□□□ 0.58
CPSF3-201ENST00000238112 DUSP11O75319 330 aaKnown RBP18.71■□□□□ 0.58
CPSF3-201ENST00000238112 SIX3O95343 332 aaPredicted RBP18.71■□□□□ 0.58
CPSF3-201ENST00000238112 FGF4P08620 206 aa18.71■□□□□ 0.58
CPSF3-201ENST00000238112 ZNF23P17027 643 aa18.71■□□□□ 0.58
CPSF3-201ENST00000238112 ATP6V1B2P21281 511 aa18.71■□□□□ 0.58
CPSF3-201ENST00000238112 LRRC23Q53EV4 343 aaPredicted RBP18.71■□□□□ 0.58
CPSF3-201ENST00000238112 ZNF549Q6P9A3 640 aa18.71■□□□□ 0.58
CPSF3-201ENST00000238112 ERMP1Q7Z2K6 904 aa18.71■□□□□ 0.58
CPSF3-201ENST00000238112 NUP93Q8N1F7 819 aa18.71■□□□□ 0.58
CPSF3-201ENST00000238112 ATP6V0D2Q8N8Y2 350 aa18.71■□□□□ 0.58
CPSF3-201ENST00000238112 RMND5BQ96G75 393 aaPredicted RBP18.71■□□□□ 0.58
CPSF3-201ENST00000238112 TCF12Q99081 682 aa18.71■□□□□ 0.58
CPSF3-201ENST00000238112 ADAM2Q99965 735 aa18.71■□□□□ 0.58
CPSF3-201ENST00000238112 OCEL1Q9H607 264 aa18.71■□□□□ 0.58
CPSF3-201ENST00000238112 PCDHB8Q9UN66 801 aa18.71■□□□□ 0.58
CPSF3-201ENST00000238112 PTGDR2Q9Y5Y4 395 aa18.71■□□□□ 0.58
CPSF3-201ENST00000238112 ARL5AQ9Y689 179 aa18.71■□□□□ 0.58
CPSF3-201ENST00000238112 PTPRDP23468 1912 aa18.7■□□□□ 0.58
CPSF3-201ENST00000238112 BMP2P12643 396 aa18.7■□□□□ 0.58
CPSF3-201ENST00000238112 GFAPP14136 432 aa18.7■□□□□ 0.58
CPSF3-201ENST00000238112 CKMT2P17540 419 aa18.7■□□□□ 0.58
CPSF3-201ENST00000238112 EFEMP1Q12805 493 aa18.7■□□□□ 0.58
CPSF3-201ENST00000238112 VPS26BQ4G0F5 336 aa18.7■□□□□ 0.58
CPSF3-201ENST00000238112 PGBD5Q8N414 524 aa18.7■□□□□ 0.58
CPSF3-201ENST00000238112 ZUFSPQ96AP4 578 aa18.7■□□□□ 0.58
CPSF3-201ENST00000238112 GPATCH1Q9BRR8 931 aaKnown RBP18.7■□□□□ 0.58
CPSF3-201ENST00000238112 ANKRD60Q9BZ19 345 aa18.7■□□□□ 0.58
CPSF3-201ENST00000238112 FBXO44Q9H4M3 255 aa18.7■□□□□ 0.58
CPSF3-201ENST00000238112 GMPR2Q9P2T1 348 aaKnown RBP18.7■□□□□ 0.58
CPSF3-201ENST00000238112 AURKCQ9UQB9 309 aa18.7■□□□□ 0.58
CPSF3-201ENST00000238112 H3BNH8 94 aa18.69■□□□□ 0.58
CPSF3-201ENST00000238112 H3BSA7 217 aa18.69■□□□□ 0.58
CPSF3-201ENST00000238112 PPP6CO00743 305 aa18.69■□□□□ 0.58
CPSF3-201ENST00000238112 NME4O00746 187 aa18.69■□□□□ 0.58
CPSF3-201ENST00000238112 RAMP2O60895 175 aa18.69■□□□□ 0.58
CPSF3-201ENST00000238112 ZNF37AP17032 561 aaPredicted RBP18.69■□□□□ 0.58
CPSF3-201ENST00000238112 NELFEP18615 380 aaKnown RBP18.69■□□□□ 0.58
CPSF3-201ENST00000238112 INPP5AQ14642 412 aa18.69■□□□□ 0.58
CPSF3-201ENST00000238112 POLD3Q15054 466 aaPredicted RBP18.69■□□□□ 0.58
CPSF3-201ENST00000238112 RPS6KA2Q15349 733 aa18.69■□□□□ 0.58
CPSF3-201ENST00000238112 OR4D1Q15615 310 aa18.69■□□□□ 0.58
CPSF3-201ENST00000238112 DDR2Q16832 855 aa18.69■□□□□ 0.58
CPSF3-201ENST00000238112 TBCELQ5QJ74 424 aa18.69■□□□□ 0.58
CPSF3-201ENST00000238112 IL31Q6EBC2 164 aa18.69■□□□□ 0.58
CPSF3-201ENST00000238112 PPP4R4Q6NUP7 873 aa18.69■□□□□ 0.58
CPSF3-201ENST00000238112 C2orf69Q8N8R5 385 aa18.69■□□□□ 0.58
CPSF3-201ENST00000238112 B4GALNT2Q8NHY0 566 aa18.69■□□□□ 0.58
CPSF3-201ENST00000238112 TADA1Q96BN2 335 aa18.69■□□□□ 0.58
CPSF3-201ENST00000238112 TUBGCP3Q96CW5 907 aa18.69■□□□□ 0.58
CPSF3-201ENST00000238112 LRCH3Q96II8 777 aa18.69■□□□□ 0.58
CPSF3-201ENST00000238112 SEMA3CQ99985 751 aa18.69■□□□□ 0.58
CPSF3-201ENST00000238112 POLR1EQ9GZS1 481 aaKnown RBP18.69■□□□□ 0.58
CPSF3-201ENST00000238112 MAP10Q9P2G4 905 aa18.69■□□□□ 0.58
CPSF3-201ENST00000238112 GIMAP2Q9UG22 337 aa18.69■□□□□ 0.58
CPSF3-201ENST00000238112 TMCO1Q9UM00 188 aa18.69■□□□□ 0.58
CPSF3-201ENST00000238112 CEPT1Q9Y6K0 416 aa18.69■□□□□ 0.58
CPSF3-201ENST00000238112 NLRC5Q86WI3 1866 aa18.69■□□□□ 0.58
CPSF3-201ENST00000238112 PDLIM1O00151 329 aa18.69■□□□□ 0.58
CPSF3-201ENST00000238112 CDH2P19022 906 aaPredicted RBP18.69■□□□□ 0.58
CPSF3-201ENST00000238112 HLA-DPA1P20036 260 aa18.69■□□□□ 0.58
CPSF3-201ENST00000238112 ATP6V0D1P61421 351 aa18.69■□□□□ 0.58
CPSF3-201ENST00000238112 PRKCQQ04759 706 aa18.69■□□□□ 0.58
CPSF3-201ENST00000238112 ACVR1Q04771 509 aa18.69■□□□□ 0.58
CPSF3-201ENST00000238112 TNK2Q07912 1038 aa18.69■□□□□ 0.58
CPSF3-201ENST00000238112 IL10RBQ08334 325 aa18.69■□□□□ 0.58
CPSF3-201ENST00000238112 KANK2Q63ZY3 851 aa18.69■□□□□ 0.58
CPSF3-201ENST00000238112 RAP1GAP2Q684P5 730 aa18.69■□□□□ 0.58
CPSF3-201ENST00000238112 RHEBL1Q8TAI7 183 aa18.69■□□□□ 0.58
CPSF3-201ENST00000238112 TRPC4APQ8TEL6 797 aa18.69■□□□□ 0.58
CPSF3-201ENST00000238112 IGSF8Q969P0 613 aa18.69■□□□□ 0.58
CPSF3-201ENST00000238112 POPDC3Q9HBV1 291 aa18.69■□□□□ 0.58
CPSF3-201ENST00000238112 CCM2LQ9NUG4 571 aaPredicted RBP18.69■□□□□ 0.58
CPSF3-201ENST00000238112 GID8Q9NWU2 228 aa18.69■□□□□ 0.58
CPSF3-201ENST00000238112 GMIPQ9P107 970 aa18.69■□□□□ 0.58
CPSF3-201ENST00000238112 ABCD2Q9UBJ2 740 aa18.69■□□□□ 0.58
CPSF3-201ENST00000238112 CCDC162PA2VCL2 907 aa18.68■□□□□ 0.58
CPSF3-201ENST00000238112 LRRC14BA6NHZ5 514 aa18.68■□□□□ 0.58
CPSF3-201ENST00000238112 AQP12BA6NM10 295 aa18.68■□□□□ 0.58
CPSF3-201ENST00000238112 SOCS2O14508 198 aa18.68■□□□□ 0.58
CPSF3-201ENST00000238112 RPP40O75818 363 aaKnown RBP18.68■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms