RNA–Protein interactions for RNA: ENST00000637699.1

CLN3-262, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,228 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-262ENST00000637699 FKBP15Q5T1M5 1219 aa19.42■□□□□ 0.7
CLN3-262ENST00000637699 DCUN1D2Q6PH85 259 aa19.42■□□□□ 0.7
CLN3-262ENST00000637699 ZNF438Q7Z4V0 828 aa19.42■□□□□ 0.7
CLN3-262ENST00000637699 C17orf82Q86X59 251 aaPredicted RBP19.42■□□□□ 0.7
CLN3-262ENST00000637699 PTRH1Q86Y79 214 aaKnown RBP19.42■□□□□ 0.7
CLN3-262ENST00000637699 PATE1Q8WXA2 126 aa19.42■□□□□ 0.7
CLN3-262ENST00000637699 NKD1Q969G9 470 aa19.42■□□□□ 0.7
CLN3-262ENST00000637699 PMEPA1Q969W9 287 aa19.42■□□□□ 0.7
CLN3-262ENST00000637699 CCDC74BQ96LY2 380 aa19.42■□□□□ 0.7
CLN3-262ENST00000637699 NSMCE3Q96MG7 304 aa19.42■□□□□ 0.7
CLN3-262ENST00000637699 TAAR9Q96RI9 348 aa19.42■□□□□ 0.7
CLN3-262ENST00000637699 SLC12A9Q9BXP2 914 aa19.42■□□□□ 0.7
CLN3-262ENST00000637699 GSDMCQ9BYG8 508 aa19.42■□□□□ 0.7
CLN3-262ENST00000637699 SP110Q9HB58 689 aa19.42■□□□□ 0.7
CLN3-262ENST00000637699 TAAR2Q9P1P5 351 aa19.42■□□□□ 0.7
CLN3-262ENST00000637699 AP4E1Q9UPM8 1137 aa19.42■□□□□ 0.7
CLN3-262ENST00000637699 TTC24A2A3L6 582 aaPredicted RBP19.41■□□□□ 0.7
CLN3-262ENST00000637699 DFFAO00273 331 aa19.41■□□□□ 0.7
CLN3-262ENST00000637699 EEF2KO00418 725 aaKnown RBP19.41■□□□□ 0.7
CLN3-262ENST00000637699 TRAFD1O14545 582 aaPredicted RBP19.41■□□□□ 0.7
CLN3-262ENST00000637699 HGSO14964 777 aaPredicted RBP19.41■□□□□ 0.7
CLN3-262ENST00000637699 DAPK3O43293 454 aa19.41■□□□□ 0.7
CLN3-262ENST00000637699 CEACAM5P06731 702 aa19.41■□□□□ 0.7
CLN3-262ENST00000637699 MYCLP1P12525 358 aaPredicted RBP19.41■□□□□ 0.7
CLN3-262ENST00000637699 CD1CP29017 333 aa19.41■□□□□ 0.7
CLN3-262ENST00000637699 HTR7P34969 479 aa19.41■□□□□ 0.7
CLN3-262ENST00000637699 ANP32AP39687 249 aaKnown RBP19.41■□□□□ 0.7
CLN3-262ENST00000637699 GNPDA1P46926 289 aa19.41■□□□□ 0.7
CLN3-262ENST00000637699 ATP1A2P50993 1020 aa19.41■□□□□ 0.7
CLN3-262ENST00000637699 ARSDP51689 593 aa19.41■□□□□ 0.7
CLN3-262ENST00000637699 OGDHQ02218 1023 aa19.41■□□□□ 0.7
CLN3-262ENST00000637699 NSUN2Q08J23 767 aaKnown RBP eCLIP19.41■□□□□ 0.7
CLN3-262ENST00000637699 KRT31Q15323 416 aa19.41■□□□□ 0.7
CLN3-262ENST00000637699 CA9Q16790 459 aa19.41■□□□□ 0.7
CLN3-262ENST00000637699 PPP1R15BQ5SWA1 713 aa19.41■□□□□ 0.7
CLN3-262ENST00000637699 NKAIN2Q5VXU1 208 aa19.41■□□□□ 0.7
CLN3-262ENST00000637699 DENND2CQ68D51 928 aa19.41■□□□□ 0.7
CLN3-262ENST00000637699 SLC30A9Q6PML9 568 aa19.41■□□□□ 0.7
CLN3-262ENST00000637699 ARHGAP36Q6ZRI8 547 aa19.41■□□□□ 0.7
CLN3-262ENST00000637699 HEATR4Q86WZ0 1026 aa19.41■□□□□ 0.7
CLN3-262ENST00000637699 IL22RA1Q8N6P7 574 aa19.41■□□□□ 0.7
CLN3-262ENST00000637699 NUS1Q96E22 293 aa19.41■□□□□ 0.7
CLN3-262ENST00000637699 COQ10AQ96MF6 247 aa19.41■□□□□ 0.7
CLN3-262ENST00000637699 PCMTD1Q96MG8 357 aaPredicted RBP19.41■□□□□ 0.7
CLN3-262ENST00000637699 DHX35Q9H5Z1 703 aaKnown RBP19.41■□□□□ 0.7
CLN3-262ENST00000637699 PHPT1Q9NRX4 125 aaPredicted RBP19.41■□□□□ 0.7
CLN3-262ENST00000637699 B4GALT6Q9UBX8 382 aa19.41■□□□□ 0.7
CLN3-262ENST00000637699 DOPEY2Q9Y3R5 2298 aa19.4■□□□□ 0.7
CLN3-262ENST00000637699 ZW10O43264 779 aa19.4■□□□□ 0.7
CLN3-262ENST00000637699 TPM2P07951 284 aa19.4■□□□□ 0.7
CLN3-262ENST00000637699 DESP17661 470 aa19.4■□□□□ 0.7
CLN3-262ENST00000637699 MPSTP25325 297 aa19.4■□□□□ 0.7
CLN3-262ENST00000637699 BORAQ6PGQ7 559 aa19.4■□□□□ 0.7
CLN3-262ENST00000637699 ARHGAP12Q8IWW6 846 aa19.4■□□□□ 0.7
CLN3-262ENST00000637699 PTCD2Q8WV60 388 aaKnown RBP19.4■□□□□ 0.7
CLN3-262ENST00000637699 AGPAT1Q99943 283 aa19.4■□□□□ 0.7
CLN3-262ENST00000637699 SIK3Q9Y2K2 1263 aa19.4■□□□□ 0.7
CLN3-262ENST00000637699 GOLGA6CA6NDK9 693 aa19.39■□□□□ 0.69
CLN3-262ENST00000637699 GOLGA6BA6NDN3 693 aa19.39■□□□□ 0.69
CLN3-262ENST00000637699 GOLGA6DP0CG33 693 aa19.39■□□□□ 0.69
CLN3-262ENST00000637699 LIFP15018 202 aa19.39■□□□□ 0.69
CLN3-262ENST00000637699 GPR3P46089 330 aa19.39■□□□□ 0.69
CLN3-262ENST00000637699 POLD2P49005 469 aa19.39■□□□□ 0.69
CLN3-262ENST00000637699 LIMK2P53671 638 aa19.39■□□□□ 0.69
CLN3-262ENST00000637699 AP1S1P61966 158 aa19.39■□□□□ 0.69
CLN3-262ENST00000637699 RFTN1Q14699 578 aaPredicted RBP19.39■□□□□ 0.69
CLN3-262ENST00000637699 NR1D2Q14995 579 aa19.39■□□□□ 0.69
CLN3-262ENST00000637699 CNGA3Q16281 694 aa19.39■□□□□ 0.69
CLN3-262ENST00000637699 CLPPQ16740 277 aaPredicted RBP19.39■□□□□ 0.69
CLN3-262ENST00000637699 PDCD6IPQ8WUM4 868 aaKnown RBP19.39■□□□□ 0.69
CLN3-262ENST00000637699 ART4Q93070 314 aa19.39■□□□□ 0.69
CLN3-262ENST00000637699 TEX101Q9BY14 249 aa19.39■□□□□ 0.69
CLN3-262ENST00000637699 ADNPQ9H2P0 1102 aa19.39■□□□□ 0.69
CLN3-262ENST00000637699 TRNAU1APQ9NX07 287 aaKnown RBP19.39■□□□□ 0.69
CLN3-262ENST00000637699 GOLGA6AQ9NYA3 693 aa19.39■□□□□ 0.69
CLN3-262ENST00000637699 PCSK1NQ9UHG2 260 aa19.39■□□□□ 0.69
CLN3-262ENST00000637699 SUFUQ9UMX1 484 aa19.39■□□□□ 0.69
CLN3-262ENST00000637699 PCDHGA3Q9Y5H0 932 aa19.39■□□□□ 0.69
CLN3-262ENST00000637699 ST14Q9Y5Y6 855 aa19.39■□□□□ 0.69
CLN3-262ENST00000637699 B3GALT1Q9Y5Z6 326 aa19.39■□□□□ 0.69
CLN3-262ENST00000637699 PPM1DO15297 605 aa19.38■□□□□ 0.69
CLN3-262ENST00000637699 ZFC3H1O60293 1989 aaKnown RBP19.38■□□□□ 0.69
CLN3-262ENST00000637699 ERCC2P18074 760 aa19.38■□□□□ 0.69
CLN3-262ENST00000637699 CSTF2P33240 577 aaKnown RBP eCLIP19.38■□□□□ 0.69
CLN3-262ENST00000637699 UGT1A3P35503 534 aa19.38■□□□□ 0.69
CLN3-262ENST00000637699 CTBSQ01459 385 aa19.38■□□□□ 0.69
CLN3-262ENST00000637699 IL10RBQ08334 325 aa19.38■□□□□ 0.69
CLN3-262ENST00000637699 KCNAB2Q13303 367 aa19.38■□□□□ 0.69
CLN3-262ENST00000637699 CDKAL1Q5VV42 579 aa19.38■□□□□ 0.69
CLN3-262ENST00000637699 RFX8Q6ZV50 586 aa19.38■□□□□ 0.69
CLN3-262ENST00000637699 MCOLN2Q8IZK6 566 aa19.38■□□□□ 0.69
CLN3-262ENST00000637699 NAGSQ8N159 534 aa19.38■□□□□ 0.69
CLN3-262ENST00000637699 NPWQ8N729 165 aa19.38■□□□□ 0.69
CLN3-262ENST00000637699 AGBL5Q8NDL9 886 aa19.38■□□□□ 0.69
CLN3-262ENST00000637699 CCDC112Q8NEF3 446 aa19.38■□□□□ 0.69
CLN3-262ENST00000637699 NEK11Q8NG66 645 aa19.38■□□□□ 0.69
CLN3-262ENST00000637699 KCTD15Q96SI1 283 aaPredicted RBP19.38■□□□□ 0.69
CLN3-262ENST00000637699 FRMD8Q9BZ67 464 aaPredicted RBP19.38■□□□□ 0.69
CLN3-262ENST00000637699 NUP62CLQ9H1M0 184 aa19.38■□□□□ 0.69
CLN3-262ENST00000637699 SLC39A1Q9NY26 324 aa19.38■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms