RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 ZSWIM9Q86XI8 627 aa14.54□□□□□ -0.08
CLN3-249ENST00000636685 Q8NA96 180 aa14.54□□□□□ -0.08
CLN3-249ENST00000636685 GALNT6Q8NCL4 622 aa14.54□□□□□ -0.08
CLN3-249ENST00000636685 C1orf131Q8NDD1 294 aaKnown RBP14.54□□□□□ -0.08
CLN3-249ENST00000636685 EHBP1Q8NDI1 1231 aa14.54□□□□□ -0.08
CLN3-249ENST00000636685 ZNF397Q8NF99 534 aaPredicted RBP14.54□□□□□ -0.08
CLN3-249ENST00000636685 PTCD2Q8WV60 388 aaKnown RBP14.54□□□□□ -0.08
CLN3-249ENST00000636685 NT5C3BQ969T7 300 aa14.54□□□□□ -0.08
CLN3-249ENST00000636685 C19orf60Q96EN9 201 aa14.54□□□□□ -0.08
CLN3-249ENST00000636685 INTS4Q96HW7 963 aaKnown RBP14.54□□□□□ -0.08
CLN3-249ENST00000636685 EXOC2Q96KP1 924 aa14.54□□□□□ -0.08
CLN3-249ENST00000636685 TSG101Q99816 390 aa14.54□□□□□ -0.08
CLN3-249ENST00000636685 SLC25A23Q9BV35 468 aa14.54□□□□□ -0.08
CLN3-249ENST00000636685 MFRPQ9BY79 579 aa14.54□□□□□ -0.08
CLN3-249ENST00000636685 ULBP3Q9BZM4 244 aa14.54□□□□□ -0.08
CLN3-249ENST00000636685 WDR26Q9H7D7 661 aa14.54□□□□□ -0.08
CLN3-249ENST00000636685 PPARGC1AQ9UBK2 798 aaKnown RBP14.54□□□□□ -0.08
CLN3-249ENST00000636685 STAP1Q9ULZ2 295 aa14.54□□□□□ -0.08
CLN3-249ENST00000636685 HPSEQ9Y251 543 aa14.54□□□□□ -0.08
CLN3-249ENST00000636685 SVILO95425 2214 aa14.54□□□□□ -0.08
CLN3-249ENST00000636685 DNHD1Q96M86 4753 aa14.54□□□□□ -0.08
CLN3-249ENST00000636685 POLEQ07864 2286 aa14.53□□□□□ -0.08
CLN3-249ENST00000636685 TRBV23OR9-2A0A075B6M9 112 aa14.53□□□□□ -0.08
CLN3-249ENST00000636685 TSPAN11A1L157 253 aa14.53□□□□□ -0.08
CLN3-249ENST00000636685 A6NCN8 305 aa14.53□□□□□ -0.08
CLN3-249ENST00000636685 TRIM49BA6NDI0 452 aa14.53□□□□□ -0.08
CLN3-249ENST00000636685 KRT86O43790 486 aa14.53□□□□□ -0.08
CLN3-249ENST00000636685 CREG1O75629 220 aa14.53□□□□□ -0.08
CLN3-249ENST00000636685 F9P00740 461 aa14.53□□□□□ -0.08
CLN3-249ENST00000636685 CEACAM5P06731 702 aa14.53□□□□□ -0.08
CLN3-249ENST00000636685 GM2AP17900 193 aa14.53□□□□□ -0.08
CLN3-249ENST00000636685 PRCPP42785 496 aa14.53□□□□□ -0.08
CLN3-249ENST00000636685 CTBSQ01459 385 aa14.53□□□□□ -0.08
CLN3-249ENST00000636685 PTPN20Q4JDL3 420 aa14.53□□□□□ -0.08
CLN3-249ENST00000636685 ACBD5Q5T8D3 534 aaPredicted RBP14.53□□□□□ -0.08
CLN3-249ENST00000636685 JMJD6Q6NYC1 403 aaPredicted RBP14.53□□□□□ -0.08
CLN3-249ENST00000636685 NCAPGQ9BPX3 1015 aa14.53□□□□□ -0.08
CLN3-249ENST00000636685 SUV39H2Q9H5I1 410 aa14.53□□□□□ -0.08
CLN3-249ENST00000636685 SLAMF7Q9NQ25 335 aa14.53□□□□□ -0.08
CLN3-249ENST00000636685 TRNAU1APQ9NX07 287 aaKnown RBP14.53□□□□□ -0.08
CLN3-249ENST00000636685 KLHL3Q9UH77 587 aa14.53□□□□□ -0.08
CLN3-249ENST00000636685 ATP8A1Q9Y2Q0 1164 aa14.53□□□□□ -0.08
CLN3-249ENST00000636685 PLEKHM1Q9Y4G2 1056 aa14.53□□□□□ -0.08
CLN3-249ENST00000636685 KDELR3O43731 214 aa14.52□□□□□ -0.09
CLN3-249ENST00000636685 BUB1BO60566 1050 aaPredicted RBP14.52□□□□□ -0.09
CLN3-249ENST00000636685 CMA1P23946 247 aa14.52□□□□□ -0.09
CLN3-249ENST00000636685 SYKP43405 635 aa14.52□□□□□ -0.09
CLN3-249ENST00000636685 LEPRP48357 1165 aaKnown RBP14.52□□□□□ -0.09
CLN3-249ENST00000636685 CETN1Q12798 172 aa14.52□□□□□ -0.09
CLN3-249ENST00000636685 RALGDSQ12967 914 aa14.52□□□□□ -0.09
CLN3-249ENST00000636685 RWDD4Q6NW29 188 aaKnown RBP14.52□□□□□ -0.09
CLN3-249ENST00000636685 PNCKQ6P2M8 343 aa14.52□□□□□ -0.09
CLN3-249ENST00000636685 NLRP14Q86W24 1093 aa14.52□□□□□ -0.09
CLN3-249ENST00000636685 FAM131BQ86XD5 332 aa14.52□□□□□ -0.09
CLN3-249ENST00000636685 ZNF354CQ86Y25 554 aa14.52□□□□□ -0.09
CLN3-249ENST00000636685 OR10G6Q8NH81 332 aa14.52□□□□□ -0.09
CLN3-249ENST00000636685 HCAR2Q8TDS4 363 aa14.52□□□□□ -0.09
CLN3-249ENST00000636685 NCSTNQ92542 709 aa14.52□□□□□ -0.09
CLN3-249ENST00000636685 SLC38A3Q99624 504 aa14.52□□□□□ -0.09
CLN3-249ENST00000636685 KLC2Q9H0B6 622 aa14.52□□□□□ -0.09
CLN3-249ENST00000636685 MAGEH1Q9H213 219 aa14.52□□□□□ -0.09
CLN3-249ENST00000636685 SYNCQ9H7C4 482 aa14.52□□□□□ -0.09
CLN3-249ENST00000636685 MLXIPLQ9NP71 852 aa14.52□□□□□ -0.09
CLN3-249ENST00000636685 UBE2TQ9NPD8 197 aaPredicted RBP14.52□□□□□ -0.09
CLN3-249ENST00000636685 LHX3Q9UBR4 397 aa14.52□□□□□ -0.09
CLN3-249ENST00000636685 RCOR1Q9UKL0 485 aa14.52□□□□□ -0.09
CLN3-249ENST00000636685 SUFUQ9UMX1 484 aa14.52□□□□□ -0.09
CLN3-249ENST00000636685 PDE2AO00408 941 aaPredicted RBP14.51□□□□□ -0.09
CLN3-249ENST00000636685 RAMP2O60895 175 aa14.51□□□□□ -0.09
CLN3-249ENST00000636685 CBX6O95503 412 aa14.51□□□□□ -0.09
CLN3-249ENST00000636685 MYCLP1P12525 358 aaPredicted RBP14.51□□□□□ -0.09
CLN3-249ENST00000636685 ACTR1BP42025 376 aa14.51□□□□□ -0.09
CLN3-249ENST00000636685 MAPKAPK2P49137 400 aa14.51□□□□□ -0.09
CLN3-249ENST00000636685 CCL11P51671 97 aa14.51□□□□□ -0.09
CLN3-249ENST00000636685 NDUFA8P51970 172 aa14.51□□□□□ -0.09
CLN3-249ENST00000636685 ACTR1AP61163 376 aa14.51□□□□□ -0.09
CLN3-249ENST00000636685 SLC25A52Q3SY17 297 aa14.51□□□□□ -0.09
CLN3-249ENST00000636685 WDR74Q6RFH5 385 aaPredicted RBP14.51□□□□□ -0.09
CLN3-249ENST00000636685 LIPIQ6XZB0 460 aa14.51□□□□□ -0.09
CLN3-249ENST00000636685 LYSMD3Q7Z3D4 306 aa14.51□□□□□ -0.09
CLN3-249ENST00000636685 SLC47A2Q86VL8 602 aa14.51□□□□□ -0.09
CLN3-249ENST00000636685 MCEMP1Q8IX19 187 aa14.51□□□□□ -0.09
CLN3-249ENST00000636685 SIDT1Q9NXL6 827 aaKnown RBP14.51□□□□□ -0.09
CLN3-249ENST00000636685 ENTPD4Q9Y227 616 aa14.51□□□□□ -0.09
CLN3-249ENST00000636685 PCDHGA9Q9Y5G4 932 aaKnown RBP14.51□□□□□ -0.09
CLN3-249ENST00000636685 MDC1Q14676 2089 aaKnown RBP14.5□□□□□ -0.09
CLN3-249ENST00000636685 CFAP69A5D8W1 941 aa14.5□□□□□ -0.09
CLN3-249ENST00000636685 ZSCAN5CA6NGD5 496 aaPredicted RBP14.5□□□□□ -0.09
CLN3-249ENST00000636685 BECN2A8MW95 431 aa14.5□□□□□ -0.09
CLN3-249ENST00000636685 P4HA2O15460 535 aa14.5□□□□□ -0.09
CLN3-249ENST00000636685 ELFN1P0C7U0 828 aa14.5□□□□□ -0.09
CLN3-249ENST00000636685 RHOQP17081 205 aa14.5□□□□□ -0.09
CLN3-249ENST00000636685 CASP14P31944 242 aa14.5□□□□□ -0.09
CLN3-249ENST00000636685 ADCY8P40145 1251 aa14.5□□□□□ -0.09
CLN3-249ENST00000636685 USP8P40818 1118 aa14.5□□□□□ -0.09
CLN3-249ENST00000636685 POLD2P49005 469 aa14.5□□□□□ -0.09
CLN3-249ENST00000636685 FOXM1Q08050 763 aa14.5□□□□□ -0.09
CLN3-249ENST00000636685 DNASE1L3Q13609 305 aa14.5□□□□□ -0.09
CLN3-249ENST00000636685 ZRANB3Q5FWF4 1079 aa14.5□□□□□ -0.09
CLN3-249ENST00000636685 CFAP58Q5T655 872 aa14.5□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms