RNA–Protein interactions for RNA: ENST00000631321.1

LINC00540-203, long intergenic non-protein coding RNA 540, humanhuman

TSL 2 BASIC

Gene LINC00540, Length 2,412 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-203ENST00000631321 C7orf72A4D263 438 aa12.78□□□□□ -0.36
LINC00540-203ENST00000631321 OR51F1A6NGY5 319 aa12.78□□□□□ -0.36
LINC00540-203ENST00000631321 SUPT7LO94864 414 aa12.78□□□□□ -0.36
LINC00540-203ENST00000631321 EPOP01588 193 aa12.78□□□□□ -0.36
LINC00540-203ENST00000631321 ALDOCP09972 364 aaKnown RBP12.78□□□□□ -0.36
LINC00540-203ENST00000631321 ETS2P15036 469 aa12.78□□□□□ -0.36
LINC00540-203ENST00000631321 PBX3P40426 434 aa12.78□□□□□ -0.36
LINC00540-203ENST00000631321 IKBKEQ14164 716 aa12.78□□□□□ -0.36
LINC00540-203ENST00000631321 TRIP4Q15650 581 aaPredicted RBP12.78□□□□□ -0.36
LINC00540-203ENST00000631321 SLC5A9Q2M3M2 681 aa12.78□□□□□ -0.36
LINC00540-203ENST00000631321 PARP15Q460N3 678 aa12.78□□□□□ -0.36
LINC00540-203ENST00000631321 FBXL22Q6P050 247 aa12.78□□□□□ -0.36
LINC00540-203ENST00000631321 RHEBL1Q8TAI7 183 aa12.78□□□□□ -0.36
LINC00540-203ENST00000631321 DDI1Q8WTU0 396 aa12.78□□□□□ -0.36
LINC00540-203ENST00000631321 IGSF8Q969P0 613 aa12.78□□□□□ -0.36
LINC00540-203ENST00000631321 EME1Q96AY2 570 aa12.78□□□□□ -0.36
LINC00540-203ENST00000631321 FEM1CQ96JP0 617 aa12.78□□□□□ -0.36
LINC00540-203ENST00000631321 C3orf30Q96M34 536 aa12.78□□□□□ -0.36
LINC00540-203ENST00000631321 PTTG2Q9NZH5 202 aa12.78□□□□□ -0.36
LINC00540-203ENST00000631321 GMIPQ9P107 970 aa12.78□□□□□ -0.36
LINC00540-203ENST00000631321 TMEM189-UBE2V1I3L0A0 370 aa12.77□□□□□ -0.37
LINC00540-203ENST00000631321 CCL22O00626 93 aa12.77□□□□□ -0.37
LINC00540-203ENST00000631321 B4GALT3O60512 393 aa12.77□□□□□ -0.37
LINC00540-203ENST00000631321 FGF1P05230 155 aa12.77□□□□□ -0.37
LINC00540-203ENST00000631321 HLA-DPA1P20036 260 aa12.77□□□□□ -0.37
LINC00540-203ENST00000631321 MAGEA11P43364 429 aa12.77□□□□□ -0.37
LINC00540-203ENST00000631321 INHBEP58166 350 aa12.77□□□□□ -0.37
LINC00540-203ENST00000631321 STX1BP61266 288 aa12.77□□□□□ -0.37
LINC00540-203ENST00000631321 SH3BP2P78314 561 aa12.77□□□□□ -0.37
LINC00540-203ENST00000631321 SERINC3Q13530 473 aa12.77□□□□□ -0.37
LINC00540-203ENST00000631321 ADRM1Q16186 407 aa12.77□□□□□ -0.37
LINC00540-203ENST00000631321 NFE2Q16621 373 aaPredicted RBP12.77□□□□□ -0.37
LINC00540-203ENST00000631321 NADK2Q4G0N4 442 aa12.77□□□□□ -0.37
LINC00540-203ENST00000631321 FAM26DQ5JW98 314 aa12.77□□□□□ -0.37
LINC00540-203ENST00000631321 ACBD5Q5T8D3 534 aaPredicted RBP12.77□□□□□ -0.37
LINC00540-203ENST00000631321 SDHAF4Q5VUM1 108 aa12.77□□□□□ -0.37
LINC00540-203ENST00000631321 BORAQ6PGQ7 559 aa12.77□□□□□ -0.37
LINC00540-203ENST00000631321 ALDH16A1Q8IZ83 802 aa12.77□□□□□ -0.37
LINC00540-203ENST00000631321 OR9I1Q8NGQ6 314 aa12.77□□□□□ -0.37
LINC00540-203ENST00000631321 LRTOMTQ8WZ04 291 aa12.77□□□□□ -0.37
LINC00540-203ENST00000631321 PBXIP1Q96AQ6 731 aa12.77□□□□□ -0.37
LINC00540-203ENST00000631321 TBATAQ96M53 351 aa12.77□□□□□ -0.37
LINC00540-203ENST00000631321 CYP2S1Q96SQ9 504 aa12.77□□□□□ -0.37
LINC00540-203ENST00000631321 OSBPL11Q9BXB4 747 aa12.77□□□□□ -0.37
LINC00540-203ENST00000631321 COQ10BQ9H8M1 238 aa12.77□□□□□ -0.37
LINC00540-203ENST00000631321 AKTIPQ9H8T0 292 aa12.77□□□□□ -0.37
LINC00540-203ENST00000631321 TTC24A2A3L6 582 aaPredicted RBP12.77□□□□□ -0.37
LINC00540-203ENST00000631321 ANKRD33BA6NCL7 494 aa12.77□□□□□ -0.37
LINC00540-203ENST00000631321 CDK14O94921 469 aa12.77□□□□□ -0.37
LINC00540-203ENST00000631321 GLP2RO95838 553 aa12.77□□□□□ -0.37
LINC00540-203ENST00000631321 GOT2P00505 430 aaKnown RBP12.77□□□□□ -0.37
LINC00540-203ENST00000631321 PSMC3P17980 439 aa12.77□□□□□ -0.37
LINC00540-203ENST00000631321 OGNP20774 298 aaKnown RBP12.77□□□□□ -0.37
LINC00540-203ENST00000631321 GPR15P49685 360 aa12.77□□□□□ -0.37
LINC00540-203ENST00000631321 DSC1Q08554 894 aa12.77□□□□□ -0.37
LINC00540-203ENST00000631321 DDR2Q16832 855 aa12.77□□□□□ -0.37
LINC00540-203ENST00000631321 KANK2Q63ZY3 851 aa12.77□□□□□ -0.37
LINC00540-203ENST00000631321 MRNIPQ6NTE8 343 aa12.77□□□□□ -0.37
LINC00540-203ENST00000631321 RBM44Q6ZP01 1051 aaKnown RBP12.77□□□□□ -0.37
LINC00540-203ENST00000631321 PHYKPLQ8IUZ5 450 aa12.77□□□□□ -0.37
LINC00540-203ENST00000631321 HERC6Q8IVU3 1022 aa12.77□□□□□ -0.37
LINC00540-203ENST00000631321 ANKFN1Q8N957 763 aa12.77□□□□□ -0.37
LINC00540-203ENST00000631321 PCYOX1LQ8NBM8 494 aa12.77□□□□□ -0.37
LINC00540-203ENST00000631321 TFB2MQ9H5Q4 396 aaKnown RBP12.77□□□□□ -0.37
LINC00540-203ENST00000631321 FBRSL1Q9HCM7 1045 aaKnown RBP12.77□□□□□ -0.37
LINC00540-203ENST00000631321 ARMC1Q9NVT9 282 aa12.77□□□□□ -0.37
LINC00540-203ENST00000631321 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP12.77□□□□□ -0.37
LINC00540-203ENST00000631321 ABCD2Q9UBJ2 740 aa12.77□□□□□ -0.37
LINC00540-203ENST00000631321 APPL1Q9UKG1 709 aa12.77□□□□□ -0.37
LINC00540-203ENST00000631321 DNAJC15Q9Y5T4 150 aa12.77□□□□□ -0.37
LINC00540-203ENST00000631321 PLXNA3P51805 1871 aa12.76□□□□□ -0.37
LINC00540-203ENST00000631321 MOXD2PA6NHM9 499 aa12.76□□□□□ -0.37
LINC00540-203ENST00000631321 CD3EAPO15446 510 aaKnown RBP12.76□□□□□ -0.37
LINC00540-203ENST00000631321 RAMP2O60895 175 aa12.76□□□□□ -0.37
LINC00540-203ENST00000631321 RPP40O75818 363 aaKnown RBP12.76□□□□□ -0.37
LINC00540-203ENST00000631321 IGLV3-27P01718 113 aa12.76□□□□□ -0.37
LINC00540-203ENST00000631321 HSPA8P11142 646 aaKnown RBP12.76□□□□□ -0.37
LINC00540-203ENST00000631321 MTHFD2P13995 350 aa12.76□□□□□ -0.37
LINC00540-203ENST00000631321 ZNF37AP17032 561 aaPredicted RBP12.76□□□□□ -0.37
LINC00540-203ENST00000631321 SLC7A2P52569 658 aa12.76□□□□□ -0.37
LINC00540-203ENST00000631321 YBEYP58557 167 aaPredicted RBP12.76□□□□□ -0.37
LINC00540-203ENST00000631321 POLD3Q15054 466 aaPredicted RBP12.76□□□□□ -0.37
LINC00540-203ENST00000631321 PRMT9Q6P2P2 845 aa12.76□□□□□ -0.37
LINC00540-203ENST00000631321 RETREG3Q86VR2 466 aa12.76□□□□□ -0.37
LINC00540-203ENST00000631321 CARM1Q86X55 608 aa12.76□□□□□ -0.37
LINC00540-203ENST00000631321 PTGR2Q8N8N7 351 aaPredicted RBP12.76□□□□□ -0.37
LINC00540-203ENST00000631321 OR52K2Q8NGK3 314 aa12.76□□□□□ -0.37
LINC00540-203ENST00000631321 BRSK1Q8TDC3 778 aa12.76□□□□□ -0.37
LINC00540-203ENST00000631321 ZUFSPQ96AP4 578 aa12.76□□□□□ -0.37
LINC00540-203ENST00000631321 DNAJC1Q96KC8 554 aaKnown RBP12.76□□□□□ -0.37
LINC00540-203ENST00000631321 HOPXQ9BPY8 73 aaPredicted RBP12.76□□□□□ -0.37
LINC00540-203ENST00000631321 EFHD1Q9BUP0 239 aa12.76□□□□□ -0.37
LINC00540-203ENST00000631321 POLR1EQ9GZS1 481 aaKnown RBP12.76□□□□□ -0.37
LINC00540-203ENST00000631321 SPC25Q9HBM1 224 aa12.76□□□□□ -0.37
LINC00540-203ENST00000631321 CNOT6Q9ULM6 557 aaKnown RBP12.76□□□□□ -0.37
LINC00540-203ENST00000631321 CRYL1Q9Y2S2 319 aa12.76□□□□□ -0.37
LINC00540-203ENST00000631321 NDUFAF1Q9Y375 327 aa12.76□□□□□ -0.37
LINC00540-203ENST00000631321 RNF11Q9Y3C5 154 aa12.76□□□□□ -0.37
LINC00540-203ENST00000631321 CCDC162PA2VCL2 907 aa12.76□□□□□ -0.37
LINC00540-203ENST00000631321 MANSC4A6NHS7 340 aaPredicted RBP12.76□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms