RNA–Protein interactions for RNA: ENST00000626660.1

SQSTM1-216, Transcript of sequestosome 1, humanhuman

TSL 5 BASIC

Gene SQSTM1, Length 274 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-216ENST00000626660 ZNF711Q9Y462 761 aa19.13■□□□□ 0.65
SQSTM1-216ENST00000626660 FPGTO14772 594 aa19.12■□□□□ 0.65
SQSTM1-216ENST00000626660 WNT9AO14904 365 aa19.12■□□□□ 0.65
SQSTM1-216ENST00000626660 USP12O75317 370 aa19.12■□□□□ 0.65
SQSTM1-216ENST00000626660 CLDN7O95471 211 aa19.12■□□□□ 0.65
SQSTM1-216ENST00000626660 APRTP07741 180 aa19.12■□□□□ 0.65
SQSTM1-216ENST00000626660 STC1P52823 247 aa19.12■□□□□ 0.65
SQSTM1-216ENST00000626660 LRRC14Q15048 493 aa19.12■□□□□ 0.65
SQSTM1-216ENST00000626660 AGERQ15109 404 aa19.12■□□□□ 0.65
SQSTM1-216ENST00000626660 WHAMMP3Q1A5X7 153 aa19.12■□□□□ 0.65
SQSTM1-216ENST00000626660 PPP1R21Q6ZMI0 780 aa19.12■□□□□ 0.65
SQSTM1-216ENST00000626660 SYDE1Q6ZW31 735 aaPredicted RBP19.12■□□□□ 0.65
SQSTM1-216ENST00000626660 BLOC1S5Q8TDH9 187 aa19.12■□□□□ 0.65
SQSTM1-216ENST00000626660 SLCO2A1Q92959 643 aa19.12■□□□□ 0.65
SQSTM1-216ENST00000626660 NUS1Q96E22 293 aa19.12■□□□□ 0.65
SQSTM1-216ENST00000626660 COQ10AQ96MF6 247 aa19.12■□□□□ 0.65
SQSTM1-216ENST00000626660 ZFYVE1Q9HBF4 777 aa19.12■□□□□ 0.65
SQSTM1-216ENST00000626660 ARNT2Q9HBZ2 717 aa19.12■□□□□ 0.65
SQSTM1-216ENST00000626660 EIF2B3Q9NR50 452 aaKnown RBP19.12■□□□□ 0.65
SQSTM1-216ENST00000626660 SHOC2Q9UQ13 582 aa19.12■□□□□ 0.65
SQSTM1-216ENST00000626660 HS3ST3A1Q9Y663 406 aa19.12■□□□□ 0.65
SQSTM1-216ENST00000626660 VPS13AQ96RL7 3174 aa19.11■□□□□ 0.65
SQSTM1-216ENST00000626660 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP19.11■□□□□ 0.65
SQSTM1-216ENST00000626660 KHNYNO15037 678 aaKnown RBP19.11■□□□□ 0.65
SQSTM1-216ENST00000626660 SLC4A1P02730 911 aa19.11■□□□□ 0.65
SQSTM1-216ENST00000626660 CD38P28907 300 aa19.11■□□□□ 0.65
SQSTM1-216ENST00000626660 DR1Q01658 176 aa19.11■□□□□ 0.65
SQSTM1-216ENST00000626660 SPEM2Q0P670 501 aa19.11■□□□□ 0.65
SQSTM1-216ENST00000626660 OLIG2Q13516 323 aa19.11■□□□□ 0.65
SQSTM1-216ENST00000626660 CCDC6Q16204 474 aa19.11■□□□□ 0.65
SQSTM1-216ENST00000626660 TRIM61Q5EBN2 209 aa19.11■□□□□ 0.65
SQSTM1-216ENST00000626660 PLA2G2CQ5R387 149 aa19.11■□□□□ 0.65
SQSTM1-216ENST00000626660 ERMP1Q7Z2K6 904 aa19.11■□□□□ 0.65
SQSTM1-216ENST00000626660 LYSMD3Q7Z3D4 306 aa19.11■□□□□ 0.65
SQSTM1-216ENST00000626660 HSD11B1LQ7Z5J1 315 aa19.11■□□□□ 0.65
SQSTM1-216ENST00000626660 RAVER1Q8IY67 606 aaKnown RBP19.11■□□□□ 0.65
SQSTM1-216ENST00000626660 TMEM145Q8NBT3 493 aa19.11■□□□□ 0.65
SQSTM1-216ENST00000626660 SPATA4Q8NEY3 305 aa19.11■□□□□ 0.65
SQSTM1-216ENST00000626660 FAM174AQ8TBP5 190 aa19.11■□□□□ 0.65
SQSTM1-216ENST00000626660 DTD2Q96FN9 168 aa19.11■□□□□ 0.65
SQSTM1-216ENST00000626660 NUSAP1Q9BXS6 441 aaKnown RBP19.11■□□□□ 0.65
SQSTM1-216ENST00000626660 PKD2L2Q9NZM6 624 aa19.11■□□□□ 0.65
SQSTM1-216ENST00000626660 ASIC3Q9UHC3 531 aa19.11■□□□□ 0.65
SQSTM1-216ENST00000626660 SLC6A14Q9UN76 642 aa19.11■□□□□ 0.65
SQSTM1-216ENST00000626660 SLCO1B1Q9Y6L6 691 aa19.11■□□□□ 0.65
SQSTM1-216ENST00000626660 PTPRZ1P23471 2315 aaPredicted RBP19.1■□□□□ 0.65
SQSTM1-216ENST00000626660 A0A0U1RQS6 177 aa19.1■□□□□ 0.65
SQSTM1-216ENST00000626660 GOLGA8CPA6NN73 597 aa19.1■□□□□ 0.65
SQSTM1-216ENST00000626660 A6NNZ2 444 aa19.1■□□□□ 0.65
SQSTM1-216ENST00000626660 RAD51BO15315 384 aa19.1■□□□□ 0.65
SQSTM1-216ENST00000626660 MAGEC1O60732 1142 aa19.1■□□□□ 0.65
SQSTM1-216ENST00000626660 SUN1O94901 812 aa19.1■□□□□ 0.65
SQSTM1-216ENST00000626660 C1SP09871 688 aa19.1■□□□□ 0.65
SQSTM1-216ENST00000626660 ZNF806P0C7X5 589 aa19.1■□□□□ 0.65
SQSTM1-216ENST00000626660 ETV3P41162 512 aa19.1■□□□□ 0.65
SQSTM1-216ENST00000626660 ID4P47928 161 aa19.1■□□□□ 0.65
SQSTM1-216ENST00000626660 CSNK1EP49674 416 aaKnown RBP19.1■□□□□ 0.65
SQSTM1-216ENST00000626660 C21orf59P57076 290 aa19.1■□□□□ 0.65
SQSTM1-216ENST00000626660 CDK16Q00536 496 aa19.1■□□□□ 0.65
SQSTM1-216ENST00000626660 PTSQ03393 145 aa19.1■□□□□ 0.65
SQSTM1-216ENST00000626660 OVGP1Q12889 678 aa19.1■□□□□ 0.65
SQSTM1-216ENST00000626660 DHX34Q14147 1143 aaKnown RBP19.1■□□□□ 0.65
SQSTM1-216ENST00000626660 IRF4Q15306 451 aa19.1■□□□□ 0.65
SQSTM1-216ENST00000626660 SLC23A3Q6PIS1 610 aa19.1■□□□□ 0.65
SQSTM1-216ENST00000626660 Q6ZVL8 140 aa19.1■□□□□ 0.65
SQSTM1-216ENST00000626660 GLT6D1Q7Z4J2 308 aa19.1■□□□□ 0.65
SQSTM1-216ENST00000626660 IQCHQ86VS3 1027 aa19.1■□□□□ 0.65
SQSTM1-216ENST00000626660 CBARPQ8N350 705 aaPredicted RBP19.1■□□□□ 0.65
SQSTM1-216ENST00000626660 DNAAF3Q8N9W5 541 aa19.1■□□□□ 0.65
SQSTM1-216ENST00000626660 MFSD2AQ8NA29 543 aa19.1■□□□□ 0.65
SQSTM1-216ENST00000626660 TP53I13Q8NBR0 393 aaPredicted RBP19.1■□□□□ 0.65
SQSTM1-216ENST00000626660 CENPTQ96BT3 561 aa19.1■□□□□ 0.65
SQSTM1-216ENST00000626660 KRT12Q99456 494 aa19.1■□□□□ 0.65
SQSTM1-216ENST00000626660 KLF6Q99612 283 aaPredicted RBP19.1■□□□□ 0.65
SQSTM1-216ENST00000626660 RAD18Q9NS91 495 aa19.1■□□□□ 0.65
SQSTM1-216ENST00000626660 CA5BQ9Y2D0 317 aa19.1■□□□□ 0.65
SQSTM1-216ENST00000626660 SPO11Q9Y5K1 396 aa19.1■□□□□ 0.65
SQSTM1-216ENST00000626660 RGSL1A5PLK6 1076 aa19.09■□□□□ 0.65
SQSTM1-216ENST00000626660 PATE3B3GLJ2 98 aa19.09■□□□□ 0.65
SQSTM1-216ENST00000626660 FOXD2O60548 495 aaPredicted RBP19.09■□□□□ 0.65
SQSTM1-216ENST00000626660 PTGIRP43119 386 aa19.09■□□□□ 0.65
SQSTM1-216ENST00000626660 CLDN2P57739 230 aa19.09■□□□□ 0.65
SQSTM1-216ENST00000626660 CDH17Q12864 832 aa19.09■□□□□ 0.65
SQSTM1-216ENST00000626660 PTK6Q13882 451 aa19.09■□□□□ 0.65
SQSTM1-216ENST00000626660 CSRP2Q16527 193 aa19.09■□□□□ 0.65
SQSTM1-216ENST00000626660 CDKN3Q16667 212 aa19.09■□□□□ 0.65
SQSTM1-216ENST00000626660 WSCD2Q2TBF2 565 aa19.09■□□□□ 0.65
SQSTM1-216ENST00000626660 DENND5AQ6IQ26 1287 aa19.09■□□□□ 0.65
SQSTM1-216ENST00000626660 KYAT3Q6YP21 454 aaKnown RBP19.09■□□□□ 0.65
SQSTM1-216ENST00000626660 GCNT7Q6ZNI0 430 aa19.09■□□□□ 0.65
SQSTM1-216ENST00000626660 ZNF572Q7Z3I7 529 aaPredicted RBP19.09■□□□□ 0.65
SQSTM1-216ENST00000626660 PTAR1Q7Z6K3 402 aaPredicted RBP19.09■□□□□ 0.65
SQSTM1-216ENST00000626660 NRSN1Q8IZ57 195 aa19.09■□□□□ 0.65
SQSTM1-216ENST00000626660 GPR161Q8N6U8 529 aaKnown RBP19.09■□□□□ 0.65
SQSTM1-216ENST00000626660 KLHDC7BQ96G42 594 aa19.09■□□□□ 0.65
SQSTM1-216ENST00000626660 SMOC1Q9H4F8 434 aa19.09■□□□□ 0.65
SQSTM1-216ENST00000626660 SEMA4GQ9NTN9 838 aa19.09■□□□□ 0.65
SQSTM1-216ENST00000626660 NEU2Q9Y3R4 380 aa19.09■□□□□ 0.65
SQSTM1-216ENST00000626660 A0A1W2PR77 199 aa19.08■□□□□ 0.64
SQSTM1-216ENST00000626660 C2orf81A6NN90 581 aa19.08■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms