RNA–Protein interactions for RNA: ENST00000614932.1

VPS39-214, Transcript of VPS39, HOPS complex subunit, humanhuman

Gene VPS39, Length 2,835 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-214ENST00000614932 LTBP3Q9NS15 1303 aa10.25□□□□□ -0.77
VPS39-214ENST00000614932 LRRC72A6NJI9 287 aa10.25□□□□□ -0.77
VPS39-214ENST00000614932 ADAM11O75078 769 aa10.25□□□□□ -0.77
VPS39-214ENST00000614932 VNN1O95497 513 aa10.25□□□□□ -0.77
VPS39-214ENST00000614932 CST3P01034 146 aaPredicted RBP10.25□□□□□ -0.77
VPS39-214ENST00000614932 CALB1P05937 261 aa10.25□□□□□ -0.77
VPS39-214ENST00000614932 FMO4P31512 558 aa10.25□□□□□ -0.77
VPS39-214ENST00000614932 SEPHS1P49903 392 aa10.25□□□□□ -0.77
VPS39-214ENST00000614932 PLA2G16P53816 162 aa10.25□□□□□ -0.77
VPS39-214ENST00000614932 ORC1Q13415 861 aa10.25□□□□□ -0.77
VPS39-214ENST00000614932 HIF1AQ16665 826 aa10.25□□□□□ -0.77
VPS39-214ENST00000614932 CHST15Q7LFX5 561 aaPredicted RBP10.25□□□□□ -0.77
VPS39-214ENST00000614932 PTAR1Q7Z6K3 402 aaPredicted RBP10.25□□□□□ -0.77
VPS39-214ENST00000614932 LGI2Q8N0V4 545 aa10.25□□□□□ -0.77
VPS39-214ENST00000614932 ANKFN1Q8N957 763 aa10.25□□□□□ -0.77
VPS39-214ENST00000614932 RNF149Q8NC42 400 aa10.25□□□□□ -0.77
VPS39-214ENST00000614932 VANGL1Q8TAA9 524 aaPredicted RBP10.25□□□□□ -0.77
VPS39-214ENST00000614932 USP13Q92995 863 aaPredicted RBP10.25□□□□□ -0.77
VPS39-214ENST00000614932 RNF170Q96K19 258 aa10.25□□□□□ -0.77
VPS39-214ENST00000614932 UHRF1Q96T88 793 aaPredicted RBP10.25□□□□□ -0.77
VPS39-214ENST00000614932 C11orf70Q9BRQ4 267 aa10.25□□□□□ -0.77
VPS39-214ENST00000614932 PORCNQ9H237 461 aa10.25□□□□□ -0.77
VPS39-214ENST00000614932 KLHL11Q9NVR0 708 aa10.25□□□□□ -0.77
VPS39-214ENST00000614932 WARS2Q9UGM6 360 aaKnown RBP10.25□□□□□ -0.77
VPS39-214ENST00000614932 SHOC2Q9UQ13 582 aa10.25□□□□□ -0.77
VPS39-214ENST00000614932 KCNE2Q9Y6J6 123 aa10.25□□□□□ -0.77
VPS39-214ENST00000614932 BRCA1P38398 1863 aaKnown RBP10.24□□□□□ -0.77
VPS39-214ENST00000614932 ZNFX1Q9P2E3 1918 aaKnown RBP10.24□□□□□ -0.77
VPS39-214ENST00000614932 SAGE2PA6NJ88 616 aa10.24□□□□□ -0.77
VPS39-214ENST00000614932 ZNF98A6NK75 572 aa10.24□□□□□ -0.77
VPS39-214ENST00000614932 CYB561D2O14569 222 aa10.24□□□□□ -0.77
VPS39-214ENST00000614932 CFLARO15519 480 aa10.24□□□□□ -0.77
VPS39-214ENST00000614932 PRKD3O94806 890 aa10.24□□□□□ -0.77
VPS39-214ENST00000614932 GOT2P00505 430 aaKnown RBP10.24□□□□□ -0.77
VPS39-214ENST00000614932 BPGMP07738 259 aa10.24□□□□□ -0.77
VPS39-214ENST00000614932 INHBAP08476 426 aa10.24□□□□□ -0.77
VPS39-214ENST00000614932 MAPK12P53778 367 aa10.24□□□□□ -0.77
VPS39-214ENST00000614932 OR2B6P58173 313 aa10.24□□□□□ -0.77
VPS39-214ENST00000614932 DBPQ10586 325 aaPredicted RBP10.24□□□□□ -0.77
VPS39-214ENST00000614932 GPS1Q13098 491 aa10.24□□□□□ -0.77
VPS39-214ENST00000614932 WDR44Q5JSH3 913 aa10.24□□□□□ -0.77
VPS39-214ENST00000614932 HABP4Q5JVS0 413 aaKnown RBP10.24□□□□□ -0.77
VPS39-214ENST00000614932 FAM209BQ5JX69 171 aa10.24□□□□□ -0.77
VPS39-214ENST00000614932 RNASEH2BQ5TBB1 312 aaKnown RBP10.24□□□□□ -0.77
VPS39-214ENST00000614932 LINC00523Q86TU6 105 aa10.24□□□□□ -0.77
VPS39-214ENST00000614932 CAMK1DQ8IU85 385 aa10.24□□□□□ -0.77
VPS39-214ENST00000614932 DDX1Q92499 740 aaKnown RBP10.24□□□□□ -0.77
VPS39-214ENST00000614932 KIFC1Q9BW19 673 aa10.24□□□□□ -0.77
VPS39-214ENST00000614932 FUNDC2Q9BWH2 189 aa10.24□□□□□ -0.77
VPS39-214ENST00000614932 IL37Q9NZH6 218 aa10.24□□□□□ -0.77
VPS39-214ENST00000614932 DTLQ9NZJ0 730 aa10.24□□□□□ -0.77
VPS39-214ENST00000614932 IFT80Q9P2H3 777 aaPredicted RBP10.24□□□□□ -0.77
VPS39-214ENST00000614932 TEKT2Q9UIF3 430 aa10.24□□□□□ -0.77
VPS39-214ENST00000614932 CACNG2Q9Y698 323 aa10.24□□□□□ -0.77
VPS39-214ENST00000614932 A8MUA0 341 aa10.24□□□□□ -0.77
VPS39-214ENST00000614932 B4GALT5O43286 388 aa10.24□□□□□ -0.77
VPS39-214ENST00000614932 SYNCRIPO60506 623 aaKnown RBP10.24□□□□□ -0.77
VPS39-214ENST00000614932 ZNF780AO75290 641 aaPredicted RBP10.24□□□□□ -0.77
VPS39-214ENST00000614932 IFI30P13284 250 aa10.24□□□□□ -0.77
VPS39-214ENST00000614932 CYP2A7P20853 494 aa10.24□□□□□ -0.77
VPS39-214ENST00000614932 ARSEP51690 589 aa10.24□□□□□ -0.77
VPS39-214ENST00000614932 CLCN3P51790 818 aa10.24□□□□□ -0.77
VPS39-214ENST00000614932 KLF1Q13351 362 aaPredicted RBP10.24□□□□□ -0.77
VPS39-214ENST00000614932 TRIM25Q14258 630 aaKnown RBP10.24□□□□□ -0.77
VPS39-214ENST00000614932 MFSD13AQ14CX5 517 aa10.24□□□□□ -0.77
VPS39-214ENST00000614932 BROXQ5VW32 411 aa10.24□□□□□ -0.77
VPS39-214ENST00000614932 STEAP3Q658P3 488 aa10.24□□□□□ -0.77
VPS39-214ENST00000614932 HMBOX1Q6NT76 420 aa10.24□□□□□ -0.77
VPS39-214ENST00000614932 DBX2Q6ZNG2 339 aa10.24□□□□□ -0.77
VPS39-214ENST00000614932 SLC16A12Q6ZSM3 486 aa10.24□□□□□ -0.77
VPS39-214ENST00000614932 ZCCHC23Q6ZST2 131 aa10.24□□□□□ -0.77
VPS39-214ENST00000614932 ADCK1Q86TW2 530 aa10.24□□□□□ -0.77
VPS39-214ENST00000614932 NOXA1Q86UR1 476 aa10.24□□□□□ -0.77
VPS39-214ENST00000614932 PALM2Q8IXS6 379 aa10.24□□□□□ -0.77
VPS39-214ENST00000614932 PM20D2Q8IYS1 436 aa10.24□□□□□ -0.77
VPS39-214ENST00000614932 PGAM4Q8N0Y7 254 aa10.24□□□□□ -0.77
VPS39-214ENST00000614932 CHST13Q8NET6 341 aa10.24□□□□□ -0.77
VPS39-214ENST00000614932 OR2T34Q8NGX1 318 aa10.24□□□□□ -0.77
VPS39-214ENST00000614932 PMM1Q92871 262 aa10.24□□□□□ -0.77
VPS39-214ENST00000614932 ZNF578Q96N58 590 aaPredicted RBP10.24□□□□□ -0.77
VPS39-214ENST00000614932 LENG8Q96PV6 779 aaPredicted RBP10.24□□□□□ -0.77
VPS39-214ENST00000614932 LRRC40Q9H9A6 602 aa10.24□□□□□ -0.77
VPS39-214ENST00000614932 PRDM8Q9NQV8 689 aa10.24□□□□□ -0.77
VPS39-214ENST00000614932 KCTD5Q9NXV2 234 aa10.24□□□□□ -0.77
VPS39-214ENST00000614932 MKL2Q9ULH7 1088 aa10.24□□□□□ -0.77
VPS39-214ENST00000614932 MYH9P35579 1960 aaKnown RBP10.24□□□□□ -0.77
VPS39-214ENST00000614932 PARP14Q460N5 1801 aa10.23□□□□□ -0.77
VPS39-214ENST00000614932 H3BMM5 538 aa10.23□□□□□ -0.77
VPS39-214ENST00000614932 M0R3G1 203 aa10.23□□□□□ -0.77
VPS39-214ENST00000614932 DLGAP1O14490 977 aa10.23□□□□□ -0.77
VPS39-214ENST00000614932 GRIN3BO60391 1043 aa10.23□□□□□ -0.77
VPS39-214ENST00000614932 RFX1P22670 979 aa10.23□□□□□ -0.77
VPS39-214ENST00000614932 IL12AP29459 219 aa10.23□□□□□ -0.77
VPS39-214ENST00000614932 LRPAP1P30533 357 aa10.23□□□□□ -0.77
VPS39-214ENST00000614932 PTPN5P54829 565 aa10.23□□□□□ -0.77
VPS39-214ENST00000614932 IL1RL1Q01638 556 aa10.23□□□□□ -0.77
VPS39-214ENST00000614932 RHDQ02161 417 aa10.23□□□□□ -0.77
VPS39-214ENST00000614932 ALFQ53S48 1182 aa10.23□□□□□ -0.77
VPS39-214ENST00000614932 FAM26DQ5JW98 314 aa10.23□□□□□ -0.77
VPS39-214ENST00000614932 CCNYL2Q5T2Q4 361 aa10.23□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms