RNA–Protein interactions for RNA: ENST00000613099.4

VPS13D-213, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS13D, Length 16,245 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-213ENST00000613099 TARDBPQ13148 414 aaKnown RBP eCLIP4.96□□□□□ -1.622e-6■■■□□ 18.7
VPS13D-213ENST00000613099 TEAD4Q15561 434 aa4.96□□□□□ -1.62
VPS13D-213ENST00000613099 FN3KQ9H479 309 aa4.96□□□□□ -1.62
VPS13D-213ENST00000613099 ASTN2O75129 1339 aaPredicted RBP4.96□□□□□ -1.62
VPS13D-213ENST00000613099 MYO5AQ9Y4I1 1855 aaKnown RBP4.96□□□□□ -1.62
VPS13D-213ENST00000613099 A0A1B0GVI7 797 aa4.96□□□□□ -1.62
VPS13D-213ENST00000613099 PCDHGA12O60330 932 aa4.96□□□□□ -1.62
VPS13D-213ENST00000613099 TRIM28Q13263 835 aaKnown RBP4.96□□□□□ -1.62
VPS13D-213ENST00000613099 SPCS2Q15005 226 aa4.96□□□□□ -1.62
VPS13D-213ENST00000613099 ZIK1Q3SY52 487 aaPredicted RBP4.96□□□□□ -1.62
VPS13D-213ENST00000613099 RAB11FIP2Q7L804 512 aa4.96□□□□□ -1.62
VPS13D-213ENST00000613099 ACSS3Q9H6R3 686 aa4.96□□□□□ -1.62
VPS13D-213ENST00000613099 ELAC1Q9H777 363 aaKnown RBP4.96□□□□□ -1.62
VPS13D-213ENST00000613099 WASH6PQ9NQA3 447 aa4.96□□□□□ -1.62
VPS13D-213ENST00000613099 AGRPO00253 132 aa4.96□□□□□ -1.62
VPS13D-213ENST00000613099 CLIC2O15247 247 aa4.96□□□□□ -1.62
VPS13D-213ENST00000613099 CYP26A1O43174 497 aa4.96□□□□□ -1.62
VPS13D-213ENST00000613099 PRAMEF1O95521 474 aa4.96□□□□□ -1.62
VPS13D-213ENST00000613099 FCER2P06734 321 aa4.96□□□□□ -1.62
VPS13D-213ENST00000613099 ATXN1P54253 815 aaKnown RBP4.96□□□□□ -1.62
VPS13D-213ENST00000613099 CDH11P55287 796 aa4.96□□□□□ -1.62
VPS13D-213ENST00000613099 CCNA1P78396 465 aa4.96□□□□□ -1.62
VPS13D-213ENST00000613099 INO80DQ53TQ3 878 aaPredicted RBP4.96□□□□□ -1.62
VPS13D-213ENST00000613099 MSANTD1Q6ZTZ1 278 aa4.96□□□□□ -1.62
VPS13D-213ENST00000613099 A0A1W2PPW3 197 aa4.96□□□□□ -1.62
VPS13D-213ENST00000613099 HERVK_113P63132 956 aa4.96□□□□□ -1.62
VPS13D-213ENST00000613099 SAMD11Q96NU1 681 aa4.96□□□□□ -1.62
VPS13D-213ENST00000613099 DNTTIP1Q9H147 329 aa4.96□□□□□ -1.62
VPS13D-213ENST00000613099 PNO1Q9NRX1 252 aaKnown RBP4.96□□□□□ -1.62
VPS13D-213ENST00000613099 ACTR10Q9NZ32 417 aa4.96□□□□□ -1.62
VPS13D-213ENST00000613099 HMGCRP04035 888 aa4.96□□□□□ -1.62
VPS13D-213ENST00000613099 ACADLP28330 430 aa4.96□□□□□ -1.62
VPS13D-213ENST00000613099 PRKCIP41743 596 aa4.96□□□□□ -1.62
VPS13D-213ENST00000613099 RBM34P42696 430 aaKnown RBP4.96□□□□□ -1.62
VPS13D-213ENST00000613099 RFTN1Q14699 578 aaPredicted RBP4.96□□□□□ -1.62
VPS13D-213ENST00000613099 OXA1LQ15070 435 aa4.96□□□□□ -1.62
VPS13D-213ENST00000613099 RABL3Q5HYI8 236 aa4.96□□□□□ -1.62
VPS13D-213ENST00000613099 LRRC66Q68CR7 880 aa4.96□□□□□ -1.62
VPS13D-213ENST00000613099 CIR1Q86X95 450 aaPredicted RBP4.96□□□□□ -1.62
VPS13D-213ENST00000613099 CEP97Q8IW35 865 aa4.96□□□□□ -1.62
VPS13D-213ENST00000613099 TRAF6Q9Y4K3 522 aa4.96□□□□□ -1.62
VPS13D-213ENST00000613099 WWP2O00308 870 aa4.96□□□□□ -1.62
VPS13D-213ENST00000613099 CDK1P06493 297 aa4.96□□□□□ -1.62
VPS13D-213ENST00000613099 C1QBPQ07021 282 aaKnown RBP4.96□□□□□ -1.62
VPS13D-213ENST00000613099 NFATC3Q12968 1075 aa4.96□□□□□ -1.62
VPS13D-213ENST00000613099 FUT11Q495W5 492 aa4.96□□□□□ -1.62
VPS13D-213ENST00000613099 FAM102BQ5T8I3 360 aa4.96□□□□□ -1.62
VPS13D-213ENST00000613099 IGFN1Q86VF2 1251 aa4.96□□□□□ -1.62
VPS13D-213ENST00000613099 TEX19Q8NA77 164 aa4.96□□□□□ -1.62
VPS13D-213ENST00000613099 TXNDC5Q8NBS9 432 aaKnown RBP4.96□□□□□ -1.62
VPS13D-213ENST00000613099 ETNPPLQ8TBG4 499 aa4.96□□□□□ -1.62
VPS13D-213ENST00000613099 GPKOWQ92917 476 aaPredicted RBP eCLIP4.96□□□□□ -1.623e-6■■■□□ 15.3
VPS13D-213ENST00000613099 EPB41L4BQ9H329 900 aa4.96□□□□□ -1.62
VPS13D-213ENST00000613099 ZSWIM5Q9P217 1185 aa4.96□□□□□ -1.62
VPS13D-213ENST00000613099 KLHL8Q9P2G9 620 aaPredicted RBP4.96□□□□□ -1.62
VPS13D-213ENST00000613099 HRH3Q9Y5N1 445 aa4.96□□□□□ -1.62
VPS13D-213ENST00000613099 A0A087X0B3 334 aa4.95□□□□□ -1.62
VPS13D-213ENST00000613099 ANKDD1BA6NHY2 528 aa4.95□□□□□ -1.62
VPS13D-213ENST00000613099 SOBPA7XYQ1 873 aa4.95□□□□□ -1.62
VPS13D-213ENST00000613099 ABCB7O75027 752 aa4.95□□□□□ -1.62
VPS13D-213ENST00000613099 HSPA14Q0VDF9 509 aa4.95□□□□□ -1.62
VPS13D-213ENST00000613099 COL28A1Q2UY09 1125 aa4.95□□□□□ -1.62
VPS13D-213ENST00000613099 NUDT18Q6ZVK8 323 aa4.95□□□□□ -1.62
VPS13D-213ENST00000613099 ADGRD2Q7Z7M1 963 aa4.95□□□□□ -1.62
VPS13D-213ENST00000613099 ABHD11Q8NFV4 315 aa4.95□□□□□ -1.62
VPS13D-213ENST00000613099 ZFP42Q96MM3 310 aa4.95□□□□□ -1.62
VPS13D-213ENST00000613099 SENP6Q9GZR1 1112 aaPredicted RBP4.95□□□□□ -1.62
VPS13D-213ENST00000613099 REEP1Q9H902 201 aa4.95□□□□□ -1.62
VPS13D-213ENST00000613099 RGS18Q9NS28 235 aa4.95□□□□□ -1.62
VPS13D-213ENST00000613099 LIMD1Q9UGP4 676 aa4.95□□□□□ -1.62
VPS13D-213ENST00000613099 EIF3LQ9Y262 564 aaKnown RBP4.95□□□□□ -1.62
VPS13D-213ENST00000613099 DISC1C4P0D8 188 aa4.95□□□□□ -1.62
VPS13D-213ENST00000613099 CFAP206Q8IYR0 622 aa4.95□□□□□ -1.62
VPS13D-213ENST00000613099 STOML3Q8TAV4 291 aa4.95□□□□□ -1.62
VPS13D-213ENST00000613099 BPIFB1Q8TDL5 484 aa4.95□□□□□ -1.62
VPS13D-213ENST00000613099 TBCKQ8TEA7 893 aa4.95□□□□□ -1.62
VPS13D-213ENST00000613099 TRIM43Q96BQ3 446 aaPredicted RBP4.95□□□□□ -1.62
VPS13D-213ENST00000613099 ASB2Q96Q27 587 aa4.95□□□□□ -1.62
VPS13D-213ENST00000613099 TSNAXQ99598 290 aaKnown RBP4.95□□□□□ -1.62
VPS13D-213ENST00000613099 SYNJ2BP-COX16A0A087WUM0 186 aa4.95□□□□□ -1.62
VPS13D-213ENST00000613099 TOR1BO14657 336 aa4.95□□□□□ -1.62
VPS13D-213ENST00000613099 SLC22A5O76082 557 aa4.95□□□□□ -1.62
VPS13D-213ENST00000613099 SPARCP09486 303 aa4.95□□□□□ -1.62
VPS13D-213ENST00000613099 ANXA3P12429 323 aa4.95□□□□□ -1.62
VPS13D-213ENST00000613099 ATP13A4Q4VNC1 1196 aa4.95□□□□□ -1.62
VPS13D-213ENST00000613099 FBXO33Q7Z6M2 555 aa4.95□□□□□ -1.62
VPS13D-213ENST00000613099 SH3YL1Q96HL8 342 aaPredicted RBP4.95□□□□□ -1.62
VPS13D-213ENST00000613099 BLOC1S4Q9NUP1 217 aa4.95□□□□□ -1.62
VPS13D-213ENST00000613099 TMEM161AQ9NX61 479 aa4.95□□□□□ -1.62
VPS13D-213ENST00000613099 CD58P19256 250 aa4.95□□□□□ -1.62
VPS13D-213ENST00000613099 RAB3BP20337 219 aa4.95□□□□□ -1.62
VPS13D-213ENST00000613099 RPS5P46782 204 aaKnown RBP4.95□□□□□ -1.62
VPS13D-213ENST00000613099 RPL6Q02878 288 aaKnown RBP4.95□□□□□ -1.62
VPS13D-213ENST00000613099 ACAD10Q6JQN1 1059 aa4.95□□□□□ -1.62
VPS13D-213ENST00000613099 DENND1BQ6P3S1 775 aa4.95□□□□□ -1.62
VPS13D-213ENST00000613099 MARCH10Q8NA82 808 aaPredicted RBP4.95□□□□□ -1.62
VPS13D-213ENST00000613099 CPXM1Q96SM3 734 aa4.95□□□□□ -1.62
VPS13D-213ENST00000613099 SECISBP2Q96T21 854 aaKnown RBP4.95□□□□□ -1.62
VPS13D-213ENST00000613099 MTMR4Q9NYA4 1195 aa4.95□□□□□ -1.62
VPS13D-213ENST00000613099 PRAMEF33A0A0G2JMD5 474 aa4.95□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms