RNA–Protein interactions for RNA: ENST00000611852.4

CCDC28A-202, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,505 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-202ENST00000611852 FAM174AQ8TBP5 190 aa16.56■□□□□ 0.24
CCDC28A-202ENST00000611852 KLHDC7BQ96G42 594 aa16.56■□□□□ 0.24
CCDC28A-202ENST00000611852 GTPBP2Q9BX10 602 aaKnown RBP16.56■□□□□ 0.24
CCDC28A-202ENST00000611852 FSD1LQ9BXM9 530 aa16.56■□□□□ 0.24
CCDC28A-202ENST00000611852 MAGEE1Q9HCI5 957 aa16.56■□□□□ 0.24
CCDC28A-202ENST00000611852 EIF2AK3Q9NZJ5 1116 aaKnown RBP16.56■□□□□ 0.24
CCDC28A-202ENST00000611852 SNX11Q9Y5W9 270 aa16.56■□□□□ 0.24
CCDC28A-202ENST00000611852 SAR1BQ9Y6B6 198 aa16.56■□□□□ 0.24
CCDC28A-202ENST00000611852 C1orf232A0A0U1RR37 186 aa16.55■□□□□ 0.24
CCDC28A-202ENST00000611852 GOLGA8CPA6NN73 597 aa16.55■□□□□ 0.24
CCDC28A-202ENST00000611852 A6NNZ2 444 aa16.55■□□□□ 0.24
CCDC28A-202ENST00000611852 CLDN7O95471 211 aa16.55■□□□□ 0.24
CCDC28A-202ENST00000611852 AGTP01019 485 aa16.55■□□□□ 0.24
CCDC28A-202ENST00000611852 PIRTP0C851 137 aa16.55■□□□□ 0.24
CCDC28A-202ENST00000611852 THEGLP0DJG4 465 aa16.55■□□□□ 0.24
CCDC28A-202ENST00000611852 ETS1P14921 441 aa16.55■□□□□ 0.24
CCDC28A-202ENST00000611852 ADRA1AP35348 466 aa16.55■□□□□ 0.24
CCDC28A-202ENST00000611852 ETV3P41162 512 aa16.55■□□□□ 0.24
CCDC28A-202ENST00000611852 CTSKP43235 329 aa16.55■□□□□ 0.24
CCDC28A-202ENST00000611852 TNNT3P45378 269 aaPredicted RBP16.55■□□□□ 0.24
CCDC28A-202ENST00000611852 NXPH1P58417 271 aa16.55■□□□□ 0.24
CCDC28A-202ENST00000611852 IRF4Q15306 451 aa16.55■□□□□ 0.24
CCDC28A-202ENST00000611852 CYP1B1Q16678 543 aa16.55■□□□□ 0.24
CCDC28A-202ENST00000611852 KCTD11Q693B1 232 aa16.55■□□□□ 0.24
CCDC28A-202ENST00000611852 IL27RAQ6UWB1 636 aa16.55■□□□□ 0.24
CCDC28A-202ENST00000611852 RANBP10Q6VN20 620 aa16.55■□□□□ 0.24
CCDC28A-202ENST00000611852 KDM7AQ6ZMT4 941 aa16.55■□□□□ 0.24
CCDC28A-202ENST00000611852 Q6ZVL8 140 aa16.55■□□□□ 0.24
CCDC28A-202ENST00000611852 PRUNE1Q86TP1 453 aa16.55■□□□□ 0.24
CCDC28A-202ENST00000611852 SLC25A41Q8N5S1 370 aa16.55■□□□□ 0.24
CCDC28A-202ENST00000611852 CCDC89Q8N998 374 aa16.55■□□□□ 0.24
CCDC28A-202ENST00000611852 OR2I1PQ8NGU4 316 aa16.55■□□□□ 0.24
CCDC28A-202ENST00000611852 FICDQ9BVA6 458 aa16.55■□□□□ 0.24
CCDC28A-202ENST00000611852 CFAP54Q96N23 3096 aa16.55■□□□□ 0.24
CCDC28A-202ENST00000611852 LOC105378220A0A1B0GUY1 285 aaPredicted RBP16.55■□□□□ 0.24
CCDC28A-202ENST00000611852 MAGEC1O60732 1142 aa16.55■□□□□ 0.24
CCDC28A-202ENST00000611852 C1SP09871 688 aa16.55■□□□□ 0.24
CCDC28A-202ENST00000611852 HLA-DPA1P20036 260 aa16.55■□□□□ 0.24
CCDC28A-202ENST00000611852 ACTN2P35609 894 aa16.55■□□□□ 0.24
CCDC28A-202ENST00000611852 STC1P52823 247 aa16.55■□□□□ 0.24
CCDC28A-202ENST00000611852 ATXN3P54252 364 aaPredicted RBP16.55■□□□□ 0.24
CCDC28A-202ENST00000611852 PFN3P60673 137 aa16.55■□□□□ 0.24
CCDC28A-202ENST00000611852 OLIG2Q13516 323 aa16.55■□□□□ 0.24
CCDC28A-202ENST00000611852 HLA-BQ31612 363 aa16.55■□□□□ 0.24
CCDC28A-202ENST00000611852 FAXCQ5TGI0 409 aa16.55■□□□□ 0.24
CCDC28A-202ENST00000611852 TTC27Q6P3X3 843 aa16.55■□□□□ 0.24
CCDC28A-202ENST00000611852 Q6ZSR6 202 aa16.55■□□□□ 0.24
CCDC28A-202ENST00000611852 LYSMD3Q7Z3D4 306 aa16.55■□□□□ 0.24
CCDC28A-202ENST00000611852 PTAR1Q7Z6K3 402 aaPredicted RBP16.55■□□□□ 0.24
CCDC28A-202ENST00000611852 TECPR1Q7Z6L1 1165 aa16.55■□□□□ 0.24
CCDC28A-202ENST00000611852 SPATS2Q86XZ4 545 aaKnown RBP16.55■□□□□ 0.24
CCDC28A-202ENST00000611852 SLC22A18ASQ8N1D0 253 aa16.55■□□□□ 0.24
CCDC28A-202ENST00000611852 TAB3Q8N5C8 712 aaPredicted RBP16.55■□□□□ 0.24
CCDC28A-202ENST00000611852 MINDY1Q8N5J2 469 aa16.55■□□□□ 0.24
CCDC28A-202ENST00000611852 MAGOHBQ96A72 148 aaKnown RBP16.55■□□□□ 0.24
CCDC28A-202ENST00000611852 NUS1Q96E22 293 aa16.55■□□□□ 0.24
CCDC28A-202ENST00000611852 DTD2Q96FN9 168 aa16.55■□□□□ 0.24
CCDC28A-202ENST00000611852 GAREM1Q9H706 876 aa16.55■□□□□ 0.24
CCDC28A-202ENST00000611852 TMEM9BQ9NQ34 198 aa16.55■□□□□ 0.24
CCDC28A-202ENST00000611852 GPR27Q9NS67 375 aa16.55■□□□□ 0.24
CCDC28A-202ENST00000611852 TP53BP1Q12888 1972 aaPredicted RBP16.54■□□□□ 0.24
CCDC28A-202ENST00000611852 CEP250Q9BV73 2442 aa16.54■□□□□ 0.24
CCDC28A-202ENST00000611852 GOLGA6CA6NDK9 693 aa16.54■□□□□ 0.24
CCDC28A-202ENST00000611852 GOLGA6BA6NDN3 693 aa16.54■□□□□ 0.24
CCDC28A-202ENST00000611852 FGF1P05230 155 aa16.54■□□□□ 0.24
CCDC28A-202ENST00000611852 ZSCAN5DPP0CG00 497 aa16.54■□□□□ 0.24
CCDC28A-202ENST00000611852 GOLGA6DP0CG33 693 aa16.54■□□□□ 0.24
CCDC28A-202ENST00000611852 RABIFP47224 123 aa16.54■□□□□ 0.24
CCDC28A-202ENST00000611852 ARHGAP8P85298 464 aa16.54■□□□□ 0.24
CCDC28A-202ENST00000611852 SPARCL1Q14515 664 aa16.54■□□□□ 0.24
CCDC28A-202ENST00000611852 INPP5AQ14642 412 aa16.54■□□□□ 0.24
CCDC28A-202ENST00000611852 RFLNAQ6ZTI6 216 aa16.54■□□□□ 0.24
CCDC28A-202ENST00000611852 NYAP1Q6ZVC0 841 aa16.54■□□□□ 0.24
CCDC28A-202ENST00000611852 GSTA5Q7RTV2 222 aa16.54■□□□□ 0.24
CCDC28A-202ENST00000611852 CREG2Q8IUH2 290 aa16.54■□□□□ 0.24
CCDC28A-202ENST00000611852 RAVER1Q8IY67 606 aaKnown RBP16.54■□□□□ 0.24
CCDC28A-202ENST00000611852 PLA2G15Q8NCC3 412 aa16.54■□□□□ 0.24
CCDC28A-202ENST00000611852 ATL2Q8NHH9 583 aa16.54■□□□□ 0.24
CCDC28A-202ENST00000611852 EID2BQ96D98 161 aa16.54■□□□□ 0.24
CCDC28A-202ENST00000611852 CAPZA3Q96KX2 299 aa16.54■□□□□ 0.24
CCDC28A-202ENST00000611852 SRPK1Q96SB4 655 aaKnown RBP16.54■□□□□ 0.24
CCDC28A-202ENST00000611852 APOL2Q9BQE5 337 aa16.54■□□□□ 0.24
CCDC28A-202ENST00000611852 IL21RQ9HBE5 538 aa16.54■□□□□ 0.24
CCDC28A-202ENST00000611852 ZFYVE1Q9HBF4 777 aa16.54■□□□□ 0.24
CCDC28A-202ENST00000611852 GDF3Q9NR23 364 aa16.54■□□□□ 0.24
CCDC28A-202ENST00000611852 KCTD5Q9NXV2 234 aa16.54■□□□□ 0.24
CCDC28A-202ENST00000611852 GOLGA6AQ9NYA3 693 aa16.54■□□□□ 0.24
CCDC28A-202ENST00000611852 PAK5Q9P286 719 aa16.54■□□□□ 0.24
CCDC28A-202ENST00000611852 SHOC2Q9UQ13 582 aa16.54■□□□□ 0.24
CCDC28A-202ENST00000611852 ZNF711Q9Y462 761 aa16.54■□□□□ 0.24
CCDC28A-202ENST00000611852 SPO11Q9Y5K1 396 aa16.54■□□□□ 0.24
CCDC28A-202ENST00000611852 TMEM131Q92545 1883 aa16.53■□□□□ 0.24
CCDC28A-202ENST00000611852 GOLGA6L10A0A0M3HER8 536 aa16.53■□□□□ 0.24
CCDC28A-202ENST00000611852 C4orf47A7E2U8 309 aa16.53■□□□□ 0.24
CCDC28A-202ENST00000611852 USP12O75317 370 aa16.53■□□□□ 0.24
CCDC28A-202ENST00000611852 CER1O95813 267 aa16.53■□□□□ 0.24
CCDC28A-202ENST00000611852 PCCBP05166 539 aa16.53■□□□□ 0.24
CCDC28A-202ENST00000611852 RPL22P35268 128 aaKnown RBP16.53■□□□□ 0.24
CCDC28A-202ENST00000611852 COILP38432 576 aaPredicted RBP16.53■□□□□ 0.24
CCDC28A-202ENST00000611852 LIMK1P53667 647 aa16.53■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms