RNA–Protein interactions for RNA: ENST00000600012.5

UPF1-208, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 5

Gene UPF1, Length 501 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-208ENST00000600012 MAGEC1O60732 1142 aa12.77□□□□□ -0.37
UPF1-208ENST00000600012 PRAMEF11O60813 436 aa12.77□□□□□ -0.37
UPF1-208ENST00000600012 TMEM63AO94886 807 aa12.77□□□□□ -0.37
UPF1-208ENST00000600012 PEX11BO96011 259 aa12.77□□□□□ -0.37
UPF1-208ENST00000600012 HLA-DQB2P05538 268 aa12.77□□□□□ -0.37
UPF1-208ENST00000600012 FAM153BP0C7A2 387 aa12.77□□□□□ -0.37
UPF1-208ENST00000600012 TBC1D3HP0C7X1 549 aa12.77□□□□□ -0.37
UPF1-208ENST00000600012 CCNB1P14635 433 aa12.77□□□□□ -0.37
UPF1-208ENST00000600012 ITIH2P19823 946 aa12.77□□□□□ -0.37
UPF1-208ENST00000600012 NFKB1P19838 968 aa12.77□□□□□ -0.37
UPF1-208ENST00000600012 CD68P34810 354 aaPredicted RBP12.77□□□□□ -0.37
UPF1-208ENST00000600012 ABCG1P45844 678 aa12.77□□□□□ -0.37
UPF1-208ENST00000600012 RXRGP48443 463 aa12.77□□□□□ -0.37
UPF1-208ENST00000600012 VASPP50552 380 aaPredicted RBP12.77□□□□□ -0.37
UPF1-208ENST00000600012 PPP2CBP62714 309 aa12.77□□□□□ -0.37
UPF1-208ENST00000600012 PPP2CAP67775 309 aa12.77□□□□□ -0.37
UPF1-208ENST00000600012 OVGP1Q12889 678 aa12.77□□□□□ -0.37
UPF1-208ENST00000600012 DNAJC3Q13217 504 aa12.77□□□□□ -0.37
UPF1-208ENST00000600012 FAM153CQ494X1 144 aa12.77□□□□□ -0.37
UPF1-208ENST00000600012 TEX44Q53QW1 395 aa12.77□□□□□ -0.37
UPF1-208ENST00000600012 RNASEH2BQ5TBB1 312 aaKnown RBP12.77□□□□□ -0.37
UPF1-208ENST00000600012 FAM46CQ5VWP2 391 aa12.77□□□□□ -0.37
UPF1-208ENST00000600012 TBC1D3GQ6DHY5 549 aa12.77□□□□□ -0.37
UPF1-208ENST00000600012 TBC1D3CQ6IPX1 549 aa12.77□□□□□ -0.37
UPF1-208ENST00000600012 HIBCHQ6NVY1 386 aaPredicted RBP12.77□□□□□ -0.37
UPF1-208ENST00000600012 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP12.77□□□□□ -0.37
UPF1-208ENST00000600012 PRPF39Q86UA1 669 aaKnown RBP12.77□□□□□ -0.37
UPF1-208ENST00000600012 IQCHQ86VS3 1027 aa12.77□□□□□ -0.37
UPF1-208ENST00000600012 TBC1D3Q8IZP1 549 aaPredicted RBP12.77□□□□□ -0.37
UPF1-208ENST00000600012 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP12.77□□□□□ -0.37
UPF1-208ENST00000600012 CNTD1Q8N815 330 aa12.77□□□□□ -0.37
UPF1-208ENST00000600012 OR8D1Q8WZ84 308 aa12.77□□□□□ -0.37
UPF1-208ENST00000600012 ANKRD7Q92527 254 aa12.77□□□□□ -0.37
UPF1-208ENST00000600012 ART4Q93070 314 aa12.77□□□□□ -0.37
UPF1-208ENST00000600012 IL12RB2Q99665 862 aa12.77□□□□□ -0.37
UPF1-208ENST00000600012 ETNK1Q9HBU6 452 aa12.77□□□□□ -0.37
UPF1-208ENST00000600012 ARGLU1Q9NWB6 273 aaPredicted RBP12.77□□□□□ -0.37
UPF1-208ENST00000600012 FAM153AQ9UHL3 310 aa12.77□□□□□ -0.37
UPF1-208ENST00000600012 RSPH14Q9UHP6 348 aa12.77□□□□□ -0.37
UPF1-208ENST00000600012 DMTF1Q9Y222 760 aa12.77□□□□□ -0.37
UPF1-208ENST00000600012 FARP1Q9Y4F1 1045 aaPredicted RBP12.77□□□□□ -0.37
UPF1-208ENST00000600012 TTLL3Q9Y4R7 772 aa12.77□□□□□ -0.37
UPF1-208ENST00000600012 OR51B4Q9Y5P0 310 aa12.77□□□□□ -0.37
UPF1-208ENST00000600012 PLRG1O43660 514 aaKnown RBP12.76□□□□□ -0.37
UPF1-208ENST00000600012 KDELR3O43731 214 aa12.76□□□□□ -0.37
UPF1-208ENST00000600012 ERLIN1O75477 346 aa12.76□□□□□ -0.37
UPF1-208ENST00000600012 NEBLO76041 1014 aa12.76□□□□□ -0.37
UPF1-208ENST00000600012 ETFBP38117 255 aa12.76□□□□□ -0.37
UPF1-208ENST00000600012 ARF5P84085 180 aa12.76□□□□□ -0.37
UPF1-208ENST00000600012 SLC10A7Q0GE19 358 aa12.76□□□□□ -0.37
UPF1-208ENST00000600012 ILKQ13418 452 aa12.76□□□□□ -0.37
UPF1-208ENST00000600012 KCNJ11Q14654 390 aa12.76□□□□□ -0.37
UPF1-208ENST00000600012 HES3Q5TGS1 186 aa12.76□□□□□ -0.37
UPF1-208ENST00000600012 TMCO4Q5TGY1 634 aa12.76□□□□□ -0.37
UPF1-208ENST00000600012 ITPRIPL1Q6GPH6 555 aa12.76□□□□□ -0.37
UPF1-208ENST00000600012 ZNF783Q6ZMS7 281 aa12.76□□□□□ -0.37
UPF1-208ENST00000600012 TRIM69Q86WT6 500 aa12.76□□□□□ -0.37
UPF1-208ENST00000600012 PPIL6Q8IXY8 311 aa12.76□□□□□ -0.37
UPF1-208ENST00000600012 BBOF1Q8ND07 529 aa12.76□□□□□ -0.37
UPF1-208ENST00000600012 AENQ8WTP8 325 aaKnown RBP12.76□□□□□ -0.37
UPF1-208ENST00000600012 FRS2Q8WU20 508 aa12.76□□□□□ -0.37
UPF1-208ENST00000600012 NSMCE1Q8WV22 266 aa12.76□□□□□ -0.37
UPF1-208ENST00000600012 ALG14Q96F25 216 aa12.76□□□□□ -0.37
UPF1-208ENST00000600012 TEKT5Q96M29 485 aa12.76□□□□□ -0.37
UPF1-208ENST00000600012 GDAP1L1Q96MZ0 367 aa12.76□□□□□ -0.37
UPF1-208ENST00000600012 PWWP2AQ96N64 755 aa12.76□□□□□ -0.37
UPF1-208ENST00000600012 DCBLD2Q96PD2 775 aa12.76□□□□□ -0.37
UPF1-208ENST00000600012 BBC3Q96PG8 261 aaPredicted RBP12.76□□□□□ -0.37
UPF1-208ENST00000600012 FMO2Q99518 471 aa12.76□□□□□ -0.37
UPF1-208ENST00000600012 VAT1Q99536 393 aa12.76□□□□□ -0.37
UPF1-208ENST00000600012 GORASP1Q9BQQ3 440 aa12.76□□□□□ -0.37
UPF1-208ENST00000600012 NRSN2Q9GZP1 204 aa12.76□□□□□ -0.37
UPF1-208ENST00000600012 GBA3Q9H227 469 aa12.76□□□□□ -0.37
UPF1-208ENST00000600012 NT5MQ9NPB1 228 aa12.76□□□□□ -0.37
UPF1-208ENST00000600012 RBM22Q9NW64 420 aaKnown RBP eCLIP12.76□□□□□ -0.37
UPF1-208ENST00000600012 VPS51Q9UID3 782 aa12.76□□□□□ -0.37
UPF1-208ENST00000600012 SLC25A13Q9UJS0 675 aa12.76□□□□□ -0.37
UPF1-208ENST00000600012 VPS28Q9UK41 221 aa12.76□□□□□ -0.37
UPF1-208ENST00000600012 LOC400499M0QZD8 3231 aa12.75□□□□□ -0.37
UPF1-208ENST00000600012 C1QTNF3-AMACRE9PGA6 284 aa12.75□□□□□ -0.37
UPF1-208ENST00000600012 GOLGA8MH3BSY2 632 aa12.75□□□□□ -0.37
UPF1-208ENST00000600012 ALOX15BO15296 676 aa12.75□□□□□ -0.37
UPF1-208ENST00000600012 ATP9BO43861 1147 aa12.75□□□□□ -0.37
UPF1-208ENST00000600012 TDRD6O60522 2096 aaKnown RBP12.75□□□□□ -0.37
UPF1-208ENST00000600012 ZMPSTE24O75844 475 aa12.75□□□□□ -0.37
UPF1-208ENST00000600012 FDFT1P37268 417 aa12.75□□□□□ -0.37
UPF1-208ENST00000600012 MMP13P45452 471 aa12.75□□□□□ -0.37
UPF1-208ENST00000600012 METAP1P53582 386 aa12.75□□□□□ -0.37
UPF1-208ENST00000600012 CLDN6P56747 220 aa12.75□□□□□ -0.37
UPF1-208ENST00000600012 MAXP61244 160 aa12.75□□□□□ -0.37
UPF1-208ENST00000600012 BNIP3Q12983 259 aa12.75□□□□□ -0.37
UPF1-208ENST00000600012 SEMA5AQ13591 1074 aa12.75□□□□□ -0.37
UPF1-208ENST00000600012 LBRQ14739 615 aaKnown RBP12.75□□□□□ -0.37
UPF1-208ENST00000600012 RTP5Q14D33 572 aa12.75□□□□□ -0.37
UPF1-208ENST00000600012 MORF4L2Q15014 288 aa12.75□□□□□ -0.37
UPF1-208ENST00000600012 MAP9Q49MG5 647 aa12.75□□□□□ -0.37
UPF1-208ENST00000600012 MARC1Q5VT66 337 aa12.75□□□□□ -0.37
UPF1-208ENST00000600012 FBXL19Q6PCT2 694 aa12.75□□□□□ -0.37
UPF1-208ENST00000600012 LINGO4Q6UY18 593 aa12.75□□□□□ -0.37
UPF1-208ENST00000600012 C4orf22Q6V702 233 aa12.75□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms