RNA–Protein interactions for RNA: ENST00000596842.5

UPF1-204, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,825 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-204ENST00000596842 NR4A1P22736 598 aa15.28■□□□□ 0.04
UPF1-204ENST00000596842 CDKN2DP55273 166 aa15.28■□□□□ 0.04
UPF1-204ENST00000596842 ARPP19P56211 112 aa15.28■□□□□ 0.04
UPF1-204ENST00000596842 PABPC1LQ4VXU2 614 aaKnown RBP15.28■□□□□ 0.04
UPF1-204ENST00000596842 RABL3Q5HYI8 236 aa15.28■□□□□ 0.04
UPF1-204ENST00000596842 TECRLQ5HYJ1 363 aa15.28■□□□□ 0.04
UPF1-204ENST00000596842 DENND5AQ6IQ26 1287 aa15.28■□□□□ 0.04
UPF1-204ENST00000596842 TMEM53Q6P2H8 277 aa15.28■□□□□ 0.04
UPF1-204ENST00000596842 DCLRE1AQ6PJP8 1040 aa15.28■□□□□ 0.04
UPF1-204ENST00000596842 PATL1Q86TB9 770 aaKnown RBP15.28■□□□□ 0.04
UPF1-204ENST00000596842 CHERPQ8IWX8 916 aaKnown RBP15.28■□□□□ 0.04
UPF1-204ENST00000596842 MRGPRX2Q96LB1 330 aa15.28■□□□□ 0.04
UPF1-204ENST00000596842 DHRS12A0PJE2 317 aa15.28■□□□□ 0.04
UPF1-204ENST00000596842 ZNF23P17027 643 aa15.28■□□□□ 0.04
UPF1-204ENST00000596842 GJA5P36382 358 aa15.28■□□□□ 0.04
UPF1-204ENST00000596842 POU4F1Q01851 419 aa15.28■□□□□ 0.04
UPF1-204ENST00000596842 SLC10A7Q0GE19 358 aa15.28■□□□□ 0.04
UPF1-204ENST00000596842 TIGD5Q53EQ6 642 aa15.28■□□□□ 0.04
UPF1-204ENST00000596842 TICAM1Q8IUC6 712 aa15.28■□□□□ 0.04
UPF1-204ENST00000596842 KCTD13Q8WZ19 329 aa15.28■□□□□ 0.04
UPF1-204ENST00000596842 CLK4Q9HAZ1 481 aaKnown RBP15.28■□□□□ 0.04
UPF1-204ENST00000596842 PNPLA3Q9NST1 481 aa15.28■□□□□ 0.04
UPF1-204ENST00000596842 ABI2Q9NYB9 513 aaPredicted RBP15.28■□□□□ 0.04
UPF1-204ENST00000596842 TRIP12Q14669 1992 aaPredicted RBP15.28■□□□□ 0.04
UPF1-204ENST00000596842 COL1A2P08123 1366 aa15.28■□□□□ 0.04
UPF1-204ENST00000596842 A0A087X1B8 175 aa15.28■□□□□ 0.04
UPF1-204ENST00000596842 AP1G1O43747 822 aa15.28■□□□□ 0.04
UPF1-204ENST00000596842 NPHS1O60500 1241 aa15.28■□□□□ 0.04
UPF1-204ENST00000596842 MAFKO60675 156 aa15.28■□□□□ 0.04
UPF1-204ENST00000596842 OXTRP30559 389 aa15.28■□□□□ 0.04
UPF1-204ENST00000596842 PRKAA2P54646 552 aa15.28■□□□□ 0.04
UPF1-204ENST00000596842 FRG1Q14331 258 aaKnown RBP15.28■□□□□ 0.04
UPF1-204ENST00000596842 PLA2G4EQ3MJ16 856 aa15.28■□□□□ 0.04
UPF1-204ENST00000596842 RAVER1Q8IY67 606 aaKnown RBP15.28■□□□□ 0.04
UPF1-204ENST00000596842 TMEM74Q96NL1 305 aa15.28■□□□□ 0.04
UPF1-204ENST00000596842 PRM3Q9NNZ6 103 aa15.28■□□□□ 0.04
UPF1-204ENST00000596842 ENTPD7Q9NQZ7 604 aa15.28■□□□□ 0.04
UPF1-204ENST00000596842 ADARB2Q9NS39 739 aaKnown RBP15.28■□□□□ 0.04
UPF1-204ENST00000596842 TMLHEQ9NVH6 421 aa15.28■□□□□ 0.04
UPF1-204ENST00000596842 SUCOQ9UBS9 1254 aaKnown RBP15.28■□□□□ 0.04
UPF1-204ENST00000596842 TRIM17Q9Y577 477 aa15.28■□□□□ 0.04
UPF1-204ENST00000596842 LAMA3Q16787 3333 aa15.28■□□□□ 0.04
UPF1-204ENST00000596842 CCL15-CCL14A0A0B4J2E2 113 aa15.27■□□□□ 0.04
UPF1-204ENST00000596842 CLOCKO15516 846 aa15.27■□□□□ 0.04
UPF1-204ENST00000596842 ALDOCP09972 364 aaKnown RBP15.27■□□□□ 0.04
UPF1-204ENST00000596842 COL6A2P12110 1019 aa15.27■□□□□ 0.04
UPF1-204ENST00000596842 PSMA4P25789 261 aaKnown RBP15.27■□□□□ 0.04
UPF1-204ENST00000596842 DIO3P55073 304 aa15.27■□□□□ 0.04
UPF1-204ENST00000596842 GALNT3Q14435 633 aa15.27■□□□□ 0.04
UPF1-204ENST00000596842 HERC3Q15034 1050 aa15.27■□□□□ 0.04
UPF1-204ENST00000596842 CCL15Q16663 113 aa15.27■□□□□ 0.04
UPF1-204ENST00000596842 POTEHQ6S545 545 aa15.27■□□□□ 0.04
UPF1-204ENST00000596842 TLK2Q86UE8 772 aa15.27■□□□□ 0.04
UPF1-204ENST00000596842 KIAA2013Q8IYS2 634 aa15.27■□□□□ 0.04
UPF1-204ENST00000596842 FIBCD1Q8N539 461 aa15.27■□□□□ 0.04
UPF1-204ENST00000596842 OR2T34Q8NGX1 318 aa15.27■□□□□ 0.04
UPF1-204ENST00000596842 OR2T3Q8NH03 318 aa15.27■□□□□ 0.04
UPF1-204ENST00000596842 GAB3Q8WWW8 586 aa15.27■□□□□ 0.04
UPF1-204ENST00000596842 RBM38Q9H0Z9 239 aaKnown RBP15.27■□□□□ 0.04
UPF1-204ENST00000596842 ZNF385DQ9H6B1 395 aa15.27■□□□□ 0.04
UPF1-204ENST00000596842 OLAHQ9NV23 265 aa15.27■□□□□ 0.04
UPF1-204ENST00000596842 SMOXQ9NWM0 555 aa15.27■□□□□ 0.04
UPF1-204ENST00000596842 USP22Q9UPT9 525 aa15.27■□□□□ 0.04
UPF1-204ENST00000596842 RBP1P09455 135 aa15.27■□□□□ 0.04
UPF1-204ENST00000596842 SLC7A1P30825 629 aa15.27■□□□□ 0.04
UPF1-204ENST00000596842 SERPINH1P50454 418 aaKnown RBP15.27■□□□□ 0.04
UPF1-204ENST00000596842 NFYCQ13952 458 aa15.27■□□□□ 0.04
UPF1-204ENST00000596842 GPR142Q7Z601 462 aa15.27■□□□□ 0.04
UPF1-204ENST00000596842 PAF1Q8N7H5 531 aa15.27■□□□□ 0.04
UPF1-204ENST00000596842 MAML3Q96JK9 1138 aa15.27■□□□□ 0.04
UPF1-204ENST00000596842 CYP2S1Q96SQ9 504 aa15.27■□□□□ 0.04
UPF1-204ENST00000596842 FAM124BQ9H5Z6 455 aaPredicted RBP15.27■□□□□ 0.04
UPF1-204ENST00000596842 UXTQ9UBK9 157 aaPredicted RBP15.27■□□□□ 0.04
UPF1-204ENST00000596842 NDUFAF1Q9Y375 327 aa15.27■□□□□ 0.04
UPF1-204ENST00000596842 NME4O00746 187 aa15.27■□□□□ 0.03
UPF1-204ENST00000596842 EI24O14681 340 aa15.27■□□□□ 0.03
UPF1-204ENST00000596842 TPD52P55327 224 aaPredicted RBP15.27■□□□□ 0.03
UPF1-204ENST00000596842 PPP1R8Q12972 351 aaKnown RBP15.27■□□□□ 0.03
UPF1-204ENST00000596842 PPIL2Q13356 520 aa15.27■□□□□ 0.03
UPF1-204ENST00000596842 CARTPTQ16568 116 aa15.27■□□□□ 0.03
UPF1-204ENST00000596842 XKR5Q6UX68 686 aa15.27■□□□□ 0.03
UPF1-204ENST00000596842 ARHGAP12Q8IWW6 846 aa15.27■□□□□ 0.03
UPF1-204ENST00000596842 SLC7A5P1Q8MH63 180 aa15.27■□□□□ 0.03
UPF1-204ENST00000596842 C2CD4AQ8NCU7 369 aaPredicted RBP15.27■□□□□ 0.03
UPF1-204ENST00000596842 NPLOC4Q8TAT6 608 aa15.27■□□□□ 0.03
UPF1-204ENST00000596842 KLHL25Q9H0H3 589 aa15.27■□□□□ 0.03
UPF1-204ENST00000596842 CATSPERBQ9H7T0 1116 aa15.27■□□□□ 0.03
UPF1-204ENST00000596842 POLR1BQ9H9Y6 1135 aa15.27■□□□□ 0.03
UPF1-204ENST00000596842 MRPL40Q9NQ50 206 aaKnown RBP15.27■□□□□ 0.03
UPF1-204ENST00000596842 LHX1P48742 406 aa15.26■□□□□ 0.03
UPF1-204ENST00000596842 SLC5A3P53794 718 aa15.26■□□□□ 0.03
UPF1-204ENST00000596842 SH3BP2P78314 561 aa15.26■□□□□ 0.03
UPF1-204ENST00000596842 FCRL5Q96RD9 977 aa15.26■□□□□ 0.03
UPF1-204ENST00000596842 TCF12Q99081 682 aa15.26■□□□□ 0.03
UPF1-204ENST00000596842 ABHD16BQ9H3Z7 469 aa15.26■□□□□ 0.03
UPF1-204ENST00000596842 H3BNH8 94 aa15.26■□□□□ 0.03
UPF1-204ENST00000596842 MATN3O15232 486 aa15.26■□□□□ 0.03
UPF1-204ENST00000596842 PSMD3O43242 534 aa15.26■□□□□ 0.03
UPF1-204ENST00000596842 FASP25445 335 aa15.26■□□□□ 0.03
UPF1-204ENST00000596842 RPL34P49207 117 aaKnown RBP15.26■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms