RNA–Protein interactions for RNA: ENST00000594090.5

VRK3-206, Transcript of vaccinia related kinase 3, humanhuman

TSL 1 (best)

Gene VRK3, Length 1,448 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-206ENST00000594090 GBA3Q9H227 469 aa14.58□□□□□ -0.08
VRK3-206ENST00000594090 CAAP1Q9H8G2 361 aa14.58□□□□□ -0.08
VRK3-206ENST00000594090 DNAJC28Q9NX36 388 aa14.58□□□□□ -0.08
VRK3-206ENST00000594090 COL5A1P20908 1838 aaPredicted RBP14.57□□□□□ -0.08
VRK3-206ENST00000594090 SPTBN4Q9H254 2564 aa14.57□□□□□ -0.08
VRK3-206ENST00000594090 ANKRD66B4E2M5 251 aa14.57□□□□□ -0.08
VRK3-206ENST00000594090 F5H423 210 aaPredicted RBP14.57□□□□□ -0.08
VRK3-206ENST00000594090 KCNN4O15554 427 aa14.57□□□□□ -0.08
VRK3-206ENST00000594090 PMPCBO75439 489 aa14.57□□□□□ -0.08
VRK3-206ENST00000594090 C1SP09871 688 aa14.57□□□□□ -0.08
VRK3-206ENST00000594090 ETV3P41162 512 aa14.57□□□□□ -0.08
VRK3-206ENST00000594090 STC1P52823 247 aa14.57□□□□□ -0.08
VRK3-206ENST00000594090 CDK18Q07002 472 aa14.57□□□□□ -0.08
VRK3-206ENST00000594090 ZNF542PQ5EBM4 170 aa14.57□□□□□ -0.08
VRK3-206ENST00000594090 KDELC1Q6UW63 502 aa14.57□□□□□ -0.08
VRK3-206ENST00000594090 MACC1Q6ZN28 852 aa14.57□□□□□ -0.08
VRK3-206ENST00000594090 RHBDD1Q8TEB9 315 aa14.57□□□□□ -0.08
VRK3-206ENST00000594090 APOOQ9BUR5 198 aa14.57□□□□□ -0.08
VRK3-206ENST00000594090 CARD9Q9H257 536 aa14.57□□□□□ -0.08
VRK3-206ENST00000594090 KCTD5Q9NXV2 234 aa14.57□□□□□ -0.08
VRK3-206ENST00000594090 UBP1Q9NZI7 540 aa14.57□□□□□ -0.08
VRK3-206ENST00000594090 FAM153AQ9UHL3 310 aa14.57□□□□□ -0.08
VRK3-206ENST00000594090 RSPH14Q9UHP6 348 aa14.57□□□□□ -0.08
VRK3-206ENST00000594090 R3HDM2Q9Y2K5 976 aaKnown RBP14.57□□□□□ -0.08
VRK3-206ENST00000594090 OR1A2Q9Y585 309 aa14.57□□□□□ -0.08
VRK3-206ENST00000594090 C1orf232A0A0U1RR37 186 aa14.56□□□□□ -0.08
VRK3-206ENST00000594090 MED19A0JLT2 244 aaPredicted RBP14.56□□□□□ -0.08
VRK3-206ENST00000594090 K7ESM1 405 aa14.56□□□□□ -0.08
VRK3-206ENST00000594090 ZNF189O75820 626 aaPredicted RBP14.56□□□□□ -0.08
VRK3-206ENST00000594090 STK10O94804 968 aaKnown RBP14.56□□□□□ -0.08
VRK3-206ENST00000594090 NDST3O95803 873 aa14.56□□□□□ -0.08
VRK3-206ENST00000594090 CSF2P04141 144 aa14.56□□□□□ -0.08
VRK3-206ENST00000594090 NME1P15531 152 aaKnown RBP14.56□□□□□ -0.08
VRK3-206ENST00000594090 PTSQ03393 145 aa14.56□□□□□ -0.08
VRK3-206ENST00000594090 EIF2B5Q13144 721 aaKnown RBP14.56□□□□□ -0.08
VRK3-206ENST00000594090 NFATC4Q14934 902 aa14.56□□□□□ -0.08
VRK3-206ENST00000594090 CDKN3Q16667 212 aa14.56□□□□□ -0.08
VRK3-206ENST00000594090 Q6ZVL8 140 aa14.56□□□□□ -0.08
VRK3-206ENST00000594090 KDELC2Q7Z4H8 507 aa14.56□□□□□ -0.08
VRK3-206ENST00000594090 TECPR1Q7Z6L1 1165 aa14.56□□□□□ -0.08
VRK3-206ENST00000594090 SLC13A5Q86YT5 568 aaPredicted RBP14.56□□□□□ -0.08
VRK3-206ENST00000594090 PELI3Q8N2H9 469 aa14.56□□□□□ -0.08
VRK3-206ENST00000594090 SLC35B2Q8TB61 432 aa14.56□□□□□ -0.08
VRK3-206ENST00000594090 OXNAD1Q96HP4 312 aaPredicted RBP14.56□□□□□ -0.08
VRK3-206ENST00000594090 USP29Q9HBJ7 922 aa14.56□□□□□ -0.08
VRK3-206ENST00000594090 LRP4O75096 1905 aa14.55□□□□□ -0.08
VRK3-206ENST00000594090 SPAARA0A1B0GVQ0 90 aa14.55□□□□□ -0.08
VRK3-206ENST00000594090 H3BM21 787 aa14.55□□□□□ -0.08
VRK3-206ENST00000594090 PIAS2O75928 621 aa14.55□□□□□ -0.08
VRK3-206ENST00000594090 CLDN7O95471 211 aa14.55□□□□□ -0.08
VRK3-206ENST00000594090 TSHRP16473 764 aa14.55□□□□□ -0.08
VRK3-206ENST00000594090 DGKAP23743 735 aa14.55□□□□□ -0.08
VRK3-206ENST00000594090 WNT3AP56704 352 aa14.55□□□□□ -0.08
VRK3-206ENST00000594090 HNRNPKP61978 463 aaKnown RBP eCLIP14.55□□□□□ -0.08
VRK3-206ENST00000594090 MPP3Q13368 585 aa14.55□□□□□ -0.08
VRK3-206ENST00000594090 GSE1Q14687 1217 aa14.55□□□□□ -0.08
VRK3-206ENST00000594090 TRIP6Q15654 476 aaKnown RBP14.55□□□□□ -0.08
VRK3-206ENST00000594090 ANKRD20A2Q5SQ80 823 aa14.55□□□□□ -0.08
VRK3-206ENST00000594090 N4BP2L1Q5TBK1 243 aaPredicted RBP14.55□□□□□ -0.08
VRK3-206ENST00000594090 ANKRD20A1Q5TYW2 823 aa14.55□□□□□ -0.08
VRK3-206ENST00000594090 ANKRD20A3Q5VUR7 823 aa14.55□□□□□ -0.08
VRK3-206ENST00000594090 ITPRIPL1Q6GPH6 555 aa14.55□□□□□ -0.08
VRK3-206ENST00000594090 PNCKQ6P2M8 343 aa14.55□□□□□ -0.08
VRK3-206ENST00000594090 RFLNAQ6ZTI6 216 aa14.55□□□□□ -0.08
VRK3-206ENST00000594090 GLRX5Q86SX6 157 aa14.55□□□□□ -0.08
VRK3-206ENST00000594090 REXO1L1PQ8IX06 675 aa14.55□□□□□ -0.08
VRK3-206ENST00000594090 CCDC110Q8TBZ0 833 aa14.55□□□□□ -0.08
VRK3-206ENST00000594090 FUBP1Q96AE4 644 aaKnown RBP14.55□□□□□ -0.08
VRK3-206ENST00000594090 MRGPRX2Q96LB1 330 aa14.55□□□□□ -0.08
VRK3-206ENST00000594090 SPATA13Q96N96 652 aa14.55□□□□□ -0.08
VRK3-206ENST00000594090 CDC6Q99741 560 aa14.55□□□□□ -0.08
VRK3-206ENST00000594090 GORASP1Q9BQQ3 440 aa14.55□□□□□ -0.08
VRK3-206ENST00000594090 TLR10Q9BXR5 811 aa14.55□□□□□ -0.08
VRK3-206ENST00000594090 WDR26Q9H7D7 661 aa14.55□□□□□ -0.08
VRK3-206ENST00000594090 UCKL1Q9NWZ5 548 aa14.55□□□□□ -0.08
VRK3-206ENST00000594090 CD84Q9UIB8 345 aa14.55□□□□□ -0.08
VRK3-206ENST00000594090 KLF15Q9UIH9 416 aa14.55□□□□□ -0.08
VRK3-206ENST00000594090 PNMA8BQ9ULN7 279 aaPredicted RBP14.55□□□□□ -0.08
VRK3-206ENST00000594090 LOC285095A0A1B0GVY8 99 aa14.54□□□□□ -0.08
VRK3-206ENST00000594090 ZSCAN12O43309 604 aa14.54□□□□□ -0.08
VRK3-206ENST00000594090 ADRB1P08588 477 aa14.54□□□□□ -0.08
VRK3-206ENST00000594090 JUNDP17535 347 aa14.54□□□□□ -0.08
VRK3-206ENST00000594090 PSMB4P28070 264 aa14.54□□□□□ -0.08
VRK3-206ENST00000594090 HTR1BP28222 390 aa14.54□□□□□ -0.08
VRK3-206ENST00000594090 TRIM23P36406 574 aa14.54□□□□□ -0.08
VRK3-206ENST00000594090 KIAA1024LP59773 190 aa14.54□□□□□ -0.08
VRK3-206ENST00000594090 SIM1P81133 766 aaPredicted RBP14.54□□□□□ -0.08
VRK3-206ENST00000594090 CCDC70Q6NSX1 233 aa14.54□□□□□ -0.08
VRK3-206ENST00000594090 ENPP7Q6UWV6 458 aa14.54□□□□□ -0.08
VRK3-206ENST00000594090 ZNF765Q7L2R6 523 aa14.54□□□□□ -0.08
VRK3-206ENST00000594090 LYSMD3Q7Z3D4 306 aa14.54□□□□□ -0.08
VRK3-206ENST00000594090 RAVER1Q8IY67 606 aaKnown RBP14.54□□□□□ -0.08
VRK3-206ENST00000594090 PHACTR4Q8IZ21 702 aa14.54□□□□□ -0.08
VRK3-206ENST00000594090 SLC25A45Q8N413 288 aa14.54□□□□□ -0.08
VRK3-206ENST00000594090 EID2Q8N6I1 236 aa14.54□□□□□ -0.08
VRK3-206ENST00000594090 ZNF548Q8NEK5 533 aaPredicted RBP14.54□□□□□ -0.08
VRK3-206ENST00000594090 IPMKQ8NFU5 416 aa14.54□□□□□ -0.08
VRK3-206ENST00000594090 BTN2A2Q8WVV5 523 aa14.54□□□□□ -0.08
VRK3-206ENST00000594090 ATG4AQ8WYN0 398 aa14.54□□□□□ -0.08
VRK3-206ENST00000594090 WDR92Q96MX6 357 aa14.54□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms