RNA–Protein interactions for RNA: ENST00000568191.1

VPS35-207, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-207ENST00000568191 BEX4Q9NWD9 120 aaPredicted RBP2.86□□□□□ -1.95
VPS35-207ENST00000568191 TAAR2Q9P1P5 351 aa2.86□□□□□ -1.95
VPS35-207ENST00000568191 HCN3Q9P1Z3 774 aa2.86□□□□□ -1.95
VPS35-207ENST00000568191 FBXO9Q9UK97 447 aaPredicted RBP2.86□□□□□ -1.95
VPS35-207ENST00000568191 PADI1Q9ULC6 663 aa2.86□□□□□ -1.95
VPS35-207ENST00000568191 ERVK-11Q9UQG0 969 aa2.86□□□□□ -1.95
VPS35-207ENST00000568191 ZNF711Q9Y462 761 aa2.86□□□□□ -1.95
VPS35-207ENST00000568191 ANTXRLA6NF34 631 aa2.85□□□□□ -1.95
VPS35-207ENST00000568191 ZNF587BE7ETH6 402 aa2.85□□□□□ -1.95
VPS35-207ENST00000568191 PIP5K1CO60331 668 aa2.85□□□□□ -1.95
VPS35-207ENST00000568191 ITGAXP20702 1163 aa2.85□□□□□ -1.95
VPS35-207ENST00000568191 PSMC2P35998 433 aaKnown RBP2.85□□□□□ -1.95
VPS35-207ENST00000568191 ATP12AP54707 1039 aa2.85□□□□□ -1.95
VPS35-207ENST00000568191 CDH15P55291 814 aa2.85□□□□□ -1.95
VPS35-207ENST00000568191 CLDN2P57739 230 aa2.85□□□□□ -1.95
VPS35-207ENST00000568191 EFNB1P98172 346 aa2.85□□□□□ -1.95
VPS35-207ENST00000568191 RELQ04864 619 aaPredicted RBP2.85□□□□□ -1.95
VPS35-207ENST00000568191 UBE3AQ05086 875 aa2.85□□□□□ -1.95
VPS35-207ENST00000568191 BIRC2Q13490 618 aa2.85□□□□□ -1.95
VPS35-207ENST00000568191 KIF26BQ2KJY2 2108 aa2.85□□□□□ -1.95
VPS35-207ENST00000568191 CCNYL2Q5T2Q4 361 aa2.85□□□□□ -1.95
VPS35-207ENST00000568191 GGNBP1Q5YKI7 109 aa2.85□□□□□ -1.95
VPS35-207ENST00000568191 ATG16L1Q676U5 607 aa2.85□□□□□ -1.95
VPS35-207ENST00000568191 TTI2Q6NXR4 508 aa2.85□□□□□ -1.95
VPS35-207ENST00000568191 SATL1Q86VE3 508 aa2.85□□□□□ -1.95
VPS35-207ENST00000568191 ZCCHC10Q8TBK6 192 aa2.85□□□□□ -1.95
VPS35-207ENST00000568191 RUFY2Q8WXA3 655 aa2.85□□□□□ -1.95
VPS35-207ENST00000568191 TWNKQ96RR1 684 aa2.85□□□□□ -1.95
VPS35-207ENST00000568191 MOV10L1Q9BXT6 1211 aaKnown RBP2.85□□□□□ -1.95
VPS35-207ENST00000568191 INTS2Q9H0H0 1204 aaKnown RBP2.85□□□□□ -1.95
VPS35-207ENST00000568191 LRRC4Q9HBW1 653 aa2.85□□□□□ -1.95
VPS35-207ENST00000568191 GPR108Q9NPR9 543 aa2.85□□□□□ -1.95
VPS35-207ENST00000568191 ITM2CQ9NQX7 267 aa2.85□□□□□ -1.95
VPS35-207ENST00000568191 C1RLQ9NZP8 487 aa2.85□□□□□ -1.95
VPS35-207ENST00000568191 ADAM18Q9Y3Q7 739 aa2.85□□□□□ -1.95
VPS35-207ENST00000568191 LOXL2Q9Y4K0 774 aa2.85□□□□□ -1.95
VPS35-207ENST00000568191 UTYO14607 1347 aa2.85□□□□□ -1.95
VPS35-207ENST00000568191 TMEM202A6NGA9 273 aa2.84□□□□□ -1.95
VPS35-207ENST00000568191 GAGE10A6NGK3 116 aa2.84□□□□□ -1.95
VPS35-207ENST00000568191 TSPAN4O14817 238 aa2.84□□□□□ -1.95
VPS35-207ENST00000568191 KLK8O60259 260 aa2.84□□□□□ -1.95
VPS35-207ENST00000568191 WDR1O75083 606 aa2.84□□□□□ -1.95
VPS35-207ENST00000568191 HEXAP06865 529 aa2.84□□□□□ -1.95
VPS35-207ENST00000568191 GALTP07902 379 aa2.84□□□□□ -1.95
VPS35-207ENST00000568191 AGAP20933 346 aa2.84□□□□□ -1.95
VPS35-207ENST00000568191 BDKRB2P30411 391 aa2.84□□□□□ -1.95
VPS35-207ENST00000568191 METAP2P50579 478 aaKnown RBP eCLIP2.84□□□□□ -1.95
VPS35-207ENST00000568191 KHDRBS1Q07666 443 aaKnown RBP eCLIP2.84□□□□□ -1.95
VPS35-207ENST00000568191 SREBF2Q12772 1141 aa2.84□□□□□ -1.95
VPS35-207ENST00000568191 GAGE5Q13069 117 aa2.84□□□□□ -1.95
VPS35-207ENST00000568191 GAGE6Q13070 117 aa2.84□□□□□ -1.95
VPS35-207ENST00000568191 TAF12Q16514 161 aa2.84□□□□□ -1.95
VPS35-207ENST00000568191 SLC45A4Q5BKX6 768 aa2.84□□□□□ -1.95
VPS35-207ENST00000568191 PAPPA-AS1Q5QFB9 102 aa2.84□□□□□ -1.95
VPS35-207ENST00000568191 MAP3K21Q5TCX8 1036 aa2.84□□□□□ -1.95
VPS35-207ENST00000568191 LRRC8EQ6NSJ5 796 aa2.84□□□□□ -1.95
VPS35-207ENST00000568191 TMEM81Q6P7N7 255 aa2.84□□□□□ -1.95
VPS35-207ENST00000568191 SLC22A25Q6T423 547 aa2.84□□□□□ -1.95
VPS35-207ENST00000568191 KCTD8Q6ZWB6 473 aa2.84□□□□□ -1.95
VPS35-207ENST00000568191 MARK2Q7KZI7 788 aaKnown RBP2.84□□□□□ -1.95
VPS35-207ENST00000568191 DSG4Q86SJ6 1040 aa2.84□□□□□ -1.95
VPS35-207ENST00000568191 ANKRD18AQ8IVF6 992 aa2.84□□□□□ -1.95
VPS35-207ENST00000568191 WDR63Q8IWG1 891 aa2.84□□□□□ -1.95
VPS35-207ENST00000568191 KLHDC8BQ8IXV7 354 aa2.84□□□□□ -1.95
VPS35-207ENST00000568191 LSM14AQ8ND56 463 aaKnown RBP2.84□□□□□ -1.95
VPS35-207ENST00000568191 CTCFLQ8NI51 663 aaPredicted RBP2.84□□□□□ -1.95
VPS35-207ENST00000568191 RND1Q92730 232 aa2.84□□□□□ -1.95
VPS35-207ENST00000568191 ZNF583Q96ND8 569 aa2.84□□□□□ -1.95
VPS35-207ENST00000568191 MTERF1Q99551 399 aaKnown RBP2.84□□□□□ -1.95
VPS35-207ENST00000568191 ISCA1Q9BUE6 129 aa2.84□□□□□ -1.95
VPS35-207ENST00000568191 SCRT2Q9NQ03 307 aa2.84□□□□□ -1.95
VPS35-207ENST00000568191 PPP1R14DQ9NXH3 145 aa2.84□□□□□ -1.95
VPS35-207ENST00000568191 MAP3K20Q9NYL2 800 aaKnown RBP2.84□□□□□ -1.95
VPS35-207ENST00000568191 CTNNAL1Q9UBT7 734 aa2.84□□□□□ -1.95
VPS35-207ENST00000568191 FAF1Q9UNN5 650 aaPredicted RBP2.84□□□□□ -1.95
VPS35-207ENST00000568191 PSAT1Q9Y617 370 aa2.84□□□□□ -1.95
VPS35-207ENST00000568191 STON1Q9Y6Q2 735 aa2.84□□□□□ -1.95
VPS35-207ENST00000568191 PDS5AQ29RF7 1337 aaKnown RBP2.84□□□□□ -1.96
VPS35-207ENST00000568191 TNFSF12-TNFSF13A0A0A6YY99 330 aa2.83□□□□□ -1.96
VPS35-207ENST00000568191 PCDH7O60245 1069 aa2.83□□□□□ -1.96
VPS35-207ENST00000568191 TCEA3O75764 348 aa2.83□□□□□ -1.96
VPS35-207ENST00000568191 APOHP02749 345 aaPredicted RBP2.83□□□□□ -1.96
VPS35-207ENST00000568191 TFP02787 698 aa2.83□□□□□ -1.96
VPS35-207ENST00000568191 G6PDP11413 515 aa2.83□□□□□ -1.96
VPS35-207ENST00000568191 CD53P19397 219 aa2.83□□□□□ -1.96
VPS35-207ENST00000568191 MAOAP21397 527 aa2.83□□□□□ -1.96
VPS35-207ENST00000568191 MARK3P27448 753 aa2.83□□□□□ -1.96
VPS35-207ENST00000568191 ARL1P40616 181 aaPredicted RBP2.83□□□□□ -1.96
VPS35-207ENST00000568191 MMP14P50281 582 aa2.83□□□□□ -1.96
VPS35-207ENST00000568191 HNRNPH2P55795 449 aaKnown RBP2.83□□□□□ -1.96
VPS35-207ENST00000568191 SORDQ00796 357 aa2.83□□□□□ -1.96
VPS35-207ENST00000568191 FOXM1Q08050 763 aa2.83□□□□□ -1.96
VPS35-207ENST00000568191 GTF2H2Q13888 395 aa2.83□□□□□ -1.96
VPS35-207ENST00000568191 CAMK1Q14012 370 aa2.83□□□□□ -1.96
VPS35-207ENST00000568191 TMEM35AQ53FP2 167 aa2.83□□□□□ -1.96
VPS35-207ENST00000568191 ZNF766Q5HY98 468 aa2.83□□□□□ -1.96
VPS35-207ENST00000568191 GTF2H2CQ6P1K8 395 aa2.83□□□□□ -1.96
VPS35-207ENST00000568191 MTSS1LQ765P7 747 aa2.83□□□□□ -1.96
VPS35-207ENST00000568191 ODF3L1Q8IXM7 274 aa2.83□□□□□ -1.96
VPS35-207ENST00000568191 KBTBD3Q8NAB2 608 aa2.83□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms