RNA–Protein interactions for RNA: ENST00000564091.6

CLN3-211, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 790 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-211ENST00000564091 C16orf72Q14CZ0 275 aa16.88■□□□□ 0.29
CLN3-211ENST00000564091 CNGA3Q16281 694 aa16.88■□□□□ 0.29
CLN3-211ENST00000564091 TMCO4Q5TGY1 634 aa16.88■□□□□ 0.29
CLN3-211ENST00000564091 CLEC17AQ6ZS10 378 aa16.88■□□□□ 0.29
CLN3-211ENST00000564091 NRROSQ86YC3 692 aa16.88■□□□□ 0.29
CLN3-211ENST00000564091 PTCD2Q8WV60 388 aaKnown RBP16.88■□□□□ 0.29
CLN3-211ENST00000564091 EXTL1Q92935 676 aa16.88■□□□□ 0.29
CLN3-211ENST00000564091 NUS1Q96E22 293 aa16.88■□□□□ 0.29
CLN3-211ENST00000564091 CMKLR1Q99788 373 aa16.88■□□□□ 0.29
CLN3-211ENST00000564091 C9orf172C9J069 976 aa16.87■□□□□ 0.29
CLN3-211ENST00000564091 PDE2AO00408 941 aaPredicted RBP16.87■□□□□ 0.29
CLN3-211ENST00000564091 HTRA2O43464 458 aaPredicted RBP16.87■□□□□ 0.29
CLN3-211ENST00000564091 LRCH4O75427 683 aa16.87■□□□□ 0.29
CLN3-211ENST00000564091 FTLP02792 175 aaPredicted RBP16.87■□□□□ 0.29
CLN3-211ENST00000564091 FGF1P05230 155 aa16.87■□□□□ 0.29
CLN3-211ENST00000564091 CEACAM5P06731 702 aa16.87■□□□□ 0.29
CLN3-211ENST00000564091 MYCLP1P12525 358 aaPredicted RBP16.87■□□□□ 0.29
CLN3-211ENST00000564091 CCNB1P14635 433 aa16.87■□□□□ 0.29
CLN3-211ENST00000564091 WT1P19544 449 aaPredicted RBP16.87■□□□□ 0.29
CLN3-211ENST00000564091 AK4P27144 223 aaPredicted RBP16.87■□□□□ 0.29
CLN3-211ENST00000564091 ALDH4A1P30038 563 aa16.87■□□□□ 0.29
CLN3-211ENST00000564091 ETV3P41162 512 aa16.87■□□□□ 0.29
CLN3-211ENST00000564091 RENBPP51606 427 aa16.87■□□□□ 0.29
CLN3-211ENST00000564091 PTPRRQ15256 657 aa16.87■□□□□ 0.29
CLN3-211ENST00000564091 STX1AQ16623 288 aa16.87■□□□□ 0.29
CLN3-211ENST00000564091 TSR1Q2NL82 804 aaKnown RBP16.87■□□□□ 0.29
CLN3-211ENST00000564091 MAP9Q49MG5 647 aa16.87■□□□□ 0.29
CLN3-211ENST00000564091 MANEAQ5SRI9 462 aa16.87■□□□□ 0.29
CLN3-211ENST00000564091 HSD11B1LQ7Z5J1 315 aa16.87■□□□□ 0.29
CLN3-211ENST00000564091 HEATR4Q86WZ0 1026 aa16.87■□□□□ 0.29
CLN3-211ENST00000564091 PGBD5Q8N414 524 aa16.87■□□□□ 0.29
CLN3-211ENST00000564091 KIAA1524Q8TCG1 905 aa16.87■□□□□ 0.29
CLN3-211ENST00000564091 GPBAR1Q8TDU6 330 aa16.87■□□□□ 0.29
CLN3-211ENST00000564091 ZDHHC1Q8WTX9 485 aa16.87■□□□□ 0.29
CLN3-211ENST00000564091 TMEM159Q96B96 161 aa16.87■□□□□ 0.29
CLN3-211ENST00000564091 HAUS4Q9H6D7 363 aa16.87■□□□□ 0.29
CLN3-211ENST00000564091 NOD2Q9HC29 1040 aa16.87■□□□□ 0.29
CLN3-211ENST00000564091 PHPT1Q9NRX4 125 aaPredicted RBP16.87■□□□□ 0.29
CLN3-211ENST00000564091 ETNK2Q9NVF9 386 aa16.87■□□□□ 0.29
CLN3-211ENST00000564091 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP16.86■□□□□ 0.29
CLN3-211ENST00000564091 LRRC53A6NM62 1247 aa16.86■□□□□ 0.29
CLN3-211ENST00000564091 HEXIM1O94992 359 aaKnown RBP16.86■□□□□ 0.29
CLN3-211ENST00000564091 ECEL1O95672 775 aa16.86■□□□□ 0.29
CLN3-211ENST00000564091 PEX11BO96011 259 aa16.86■□□□□ 0.29
CLN3-211ENST00000564091 CCL4P13236 92 aa16.86■□□□□ 0.29
CLN3-211ENST00000564091 CR2P20023 1033 aa16.86■□□□□ 0.29
CLN3-211ENST00000564091 AMPD1P23109 780 aa16.86■□□□□ 0.29
CLN3-211ENST00000564091 IL1R2P27930 398 aa16.86■□□□□ 0.29
CLN3-211ENST00000564091 VIPR1P32241 457 aa16.86■□□□□ 0.29
CLN3-211ENST00000564091 GNPDA1P46926 289 aa16.86■□□□□ 0.29
CLN3-211ENST00000564091 HCAR3P49019 387 aa16.86■□□□□ 0.29
CLN3-211ENST00000564091 CYP4F2P78329 520 aa16.86■□□□□ 0.29
CLN3-211ENST00000564091 TRAF2Q12933 501 aa16.86■□□□□ 0.29
CLN3-211ENST00000564091 ZNF235Q14590 738 aa16.86■□□□□ 0.29
CLN3-211ENST00000564091 PPP1R2P3Q6NXS1 205 aa16.86■□□□□ 0.29
CLN3-211ENST00000564091 ZNF574Q6ZN55 896 aaPredicted RBP16.86■□□□□ 0.29
CLN3-211ENST00000564091 PRICKLE2Q7Z3G6 844 aa16.86■□□□□ 0.29
CLN3-211ENST00000564091 ZNF571Q7Z3V5 609 aaPredicted RBP16.86■□□□□ 0.29
CLN3-211ENST00000564091 C17orf82Q86X59 251 aaPredicted RBP16.86■□□□□ 0.29
CLN3-211ENST00000564091 PSTKQ8IV42 348 aaKnown RBP16.86■□□□□ 0.29
CLN3-211ENST00000564091 CBARPQ8N350 705 aaPredicted RBP16.86■□□□□ 0.29
CLN3-211ENST00000564091 RCBTB1Q8NDN9 531 aa16.86■□□□□ 0.29
CLN3-211ENST00000564091 FNIP1Q8TF40 1166 aa16.86■□□□□ 0.29
CLN3-211ENST00000564091 PATE1Q8WXA2 126 aa16.86■□□□□ 0.29
CLN3-211ENST00000564091 JPH3Q8WXH2 748 aaPredicted RBP16.86■□□□□ 0.29
CLN3-211ENST00000564091 NUDT22Q9BRQ3 303 aa16.86■□□□□ 0.29
CLN3-211ENST00000564091 TEX101Q9BY14 249 aa16.86■□□□□ 0.29
CLN3-211ENST00000564091 SEPT10Q9P0V9 454 aa16.86■□□□□ 0.29
CLN3-211ENST00000564091 TAAR2Q9P1P5 351 aa16.86■□□□□ 0.29
CLN3-211ENST00000564091 CNOT8Q9UFF9 292 aaKnown RBP16.86■□□□□ 0.29
CLN3-211ENST00000564091 SUFUQ9UMX1 484 aa16.86■□□□□ 0.29
CLN3-211ENST00000564091 PCDHB11Q9Y5F2 797 aa16.86■□□□□ 0.29
CLN3-211ENST00000564091 ST14Q9Y5Y6 855 aa16.86■□□□□ 0.29
CLN3-211ENST00000564091 A0A0U1RQS6 177 aa16.85■□□□□ 0.29
CLN3-211ENST00000564091 GOLGA6CA6NDK9 693 aa16.85■□□□□ 0.29
CLN3-211ENST00000564091 GOLGA6BA6NDN3 693 aa16.85■□□□□ 0.29
CLN3-211ENST00000564091 RHPN2P1A8MT19 583 aa16.85■□□□□ 0.29
CLN3-211ENST00000564091 DDX3XO00571 662 aaKnown RBP eCLIP16.85■□□□□ 0.29
CLN3-211ENST00000564091 CPNE6O95741 557 aa16.85■□□□□ 0.29
CLN3-211ENST00000564091 CPP00450 1065 aa16.85■□□□□ 0.29
CLN3-211ENST00000564091 GOLGA6DP0CG33 693 aa16.85■□□□□ 0.29
CLN3-211ENST00000564091 TCF4P15884 667 aa16.85■□□□□ 0.29
CLN3-211ENST00000564091 LHCGRP22888 699 aa16.85■□□□□ 0.29
CLN3-211ENST00000564091 POLD2P49005 469 aa16.85■□□□□ 0.29
CLN3-211ENST00000564091 MAXP61244 160 aa16.85■□□□□ 0.29
CLN3-211ENST00000564091 CDK3Q00526 305 aa16.85■□□□□ 0.29
CLN3-211ENST00000564091 KCNC4Q03721 635 aa16.85■□□□□ 0.29
CLN3-211ENST00000564091 ILF3Q12906 894 aaKnown RBP eCLIP16.85■□□□□ 0.29
CLN3-211ENST00000564091 ASIC2Q16515 512 aa16.85■□□□□ 0.29
CLN3-211ENST00000564091 SMTNL2Q2TAL5 461 aa16.85■□□□□ 0.29
CLN3-211ENST00000564091 E4F1Q66K89 784 aaPredicted RBP16.85■□□□□ 0.29
CLN3-211ENST00000564091 SLC30A9Q6PML9 568 aa16.85■□□□□ 0.29
CLN3-211ENST00000564091 Q6ZVL8 140 aa16.85■□□□□ 0.29
CLN3-211ENST00000564091 TSPAN33Q86UF1 283 aa16.85■□□□□ 0.29
CLN3-211ENST00000564091 PIM3Q86V86 326 aa16.85■□□□□ 0.29
CLN3-211ENST00000564091 DTX1Q86Y01 620 aa16.85■□□□□ 0.29
CLN3-211ENST00000564091 LZTR1Q8N653 840 aa16.85■□□□□ 0.29
CLN3-211ENST00000564091 AOPEPQ8N6M6 819 aa16.85■□□□□ 0.29
CLN3-211ENST00000564091 SPOCK2Q92563 424 aa16.85■□□□□ 0.29
CLN3-211ENST00000564091 DTD2Q96FN9 168 aa16.85■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms