RNA–Protein interactions for RNA: ENST00000562626.1

CLK3-208, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 812 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-208ENST00000562626 TMEM145Q8NBT3 493 aa9.8□□□□□ -0.84
CLK3-208ENST00000562626 LRRN4CLQ8ND94 238 aa9.8□□□□□ -0.84
CLK3-208ENST00000562626 SPATA4Q8NEY3 305 aa9.8□□□□□ -0.84
CLK3-208ENST00000562626 OR2I1PQ8NGU4 316 aa9.8□□□□□ -0.84
CLK3-208ENST00000562626 CXorf40AQ8TE69 158 aa9.8□□□□□ -0.84
CLK3-208ENST00000562626 CENPTQ96BT3 561 aa9.8□□□□□ -0.84
CLK3-208ENST00000562626 IFT43Q96FT9 208 aa9.8□□□□□ -0.84
CLK3-208ENST00000562626 SERAC1Q96JX3 654 aa9.8□□□□□ -0.84
CLK3-208ENST00000562626 BMFQ96LC9 184 aa9.8□□□□□ -0.84
CLK3-208ENST00000562626 CNTNAP3BQ96NU0 1288 aa9.8□□□□□ -0.84
CLK3-208ENST00000562626 LYSMD1Q96S90 227 aa9.8□□□□□ -0.84
CLK3-208ENST00000562626 NAP1L3Q99457 506 aaPredicted RBP9.8□□□□□ -0.84
CLK3-208ENST00000562626 AGAP2Q99490 1192 aa9.8□□□□□ -0.84
CLK3-208ENST00000562626 TBL1YQ9BQ87 522 aa9.8□□□□□ -0.84
CLK3-208ENST00000562626 CNTNAP3Q9BZ76 1288 aa9.8□□□□□ -0.84
CLK3-208ENST00000562626 IRF2BPLQ9H1B7 796 aa9.8□□□□□ -0.84
CLK3-208ENST00000562626 SEMA4AQ9H3S1 761 aa9.8□□□□□ -0.84
CLK3-208ENST00000562626 RAB6BQ9NRW1 208 aa9.8□□□□□ -0.84
CLK3-208ENST00000562626 PAK5Q9P286 719 aa9.8□□□□□ -0.84
CLK3-208ENST00000562626 PCYOX1Q9UHG3 505 aa9.8□□□□□ -0.84
CLK3-208ENST00000562626 CD84Q9UIB8 345 aa9.8□□□□□ -0.84
CLK3-208ENST00000562626 CDC23Q9UJX2 597 aa9.8□□□□□ -0.84
CLK3-208ENST00000562626 PNMA8BQ9ULN7 279 aaPredicted RBP9.8□□□□□ -0.84
CLK3-208ENST00000562626 RPL26L1Q9UNX3 145 aaKnown RBP9.8□□□□□ -0.84
CLK3-208ENST00000562626 ZNF711Q9Y462 761 aa9.8□□□□□ -0.84
CLK3-208ENST00000562626 GVINP1Q7Z2Y8 2422 aa9.8□□□□□ -0.84
CLK3-208ENST00000562626 EPG5Q9HCE0 2579 aa9.79□□□□□ -0.84
CLK3-208ENST00000562626 DMXL1Q9Y485 3027 aa9.79□□□□□ -0.84
CLK3-208ENST00000562626 C1orf232A0A0U1RR37 186 aa9.79□□□□□ -0.84
CLK3-208ENST00000562626 A0A1B0GVT2 93 aa9.79□□□□□ -0.84
CLK3-208ENST00000562626 A0A1W2PQ67 120 aa9.79□□□□□ -0.84
CLK3-208ENST00000562626 MED19A0JLT2 244 aaPredicted RBP9.79□□□□□ -0.84
CLK3-208ENST00000562626 TTI1O43156 1089 aa9.79□□□□□ -0.84
CLK3-208ENST00000562626 ANXA9O76027 345 aa9.79□□□□□ -0.84
CLK3-208ENST00000562626 TM7SF2O76062 418 aa9.79□□□□□ -0.84
CLK3-208ENST00000562626 SOD1P00441 154 aa9.79□□□□□ -0.84
CLK3-208ENST00000562626 EPOP01588 193 aa9.79□□□□□ -0.84
CLK3-208ENST00000562626 ELFN1P0C7U0 828 aa9.79□□□□□ -0.84
CLK3-208ENST00000562626 CYP2A6P11509 494 aaPredicted RBP9.79□□□□□ -0.84
CLK3-208ENST00000562626 IVDP26440 423 aa9.79□□□□□ -0.84
CLK3-208ENST00000562626 FNTAP49354 379 aa9.79□□□□□ -0.84
CLK3-208ENST00000562626 EPHB1P54762 984 aa9.79□□□□□ -0.84
CLK3-208ENST00000562626 IRX4P78413 519 aa9.79□□□□□ -0.84
CLK3-208ENST00000562626 GPS1Q13098 491 aa9.79□□□□□ -0.84
CLK3-208ENST00000562626 KCNJ11Q14654 390 aa9.79□□□□□ -0.84
CLK3-208ENST00000562626 ACOX1Q15067 660 aa9.79□□□□□ -0.84
CLK3-208ENST00000562626 SETMARQ53H47 684 aaPredicted RBP9.79□□□□□ -0.84
CLK3-208ENST00000562626 NAPEPLDQ6IQ20 393 aa9.79□□□□□ -0.84
CLK3-208ENST00000562626 ERAP2Q6P179 960 aa9.79□□□□□ -0.84
CLK3-208ENST00000562626 USP45Q70EL2 814 aa9.79□□□□□ -0.84
CLK3-208ENST00000562626 ZNF572Q7Z3I7 529 aaPredicted RBP9.79□□□□□ -0.84
CLK3-208ENST00000562626 SPATS2Q86XZ4 545 aaKnown RBP9.79□□□□□ -0.84
CLK3-208ENST00000562626 SLC22A18ASQ8N1D0 253 aa9.79□□□□□ -0.84
CLK3-208ENST00000562626 AGGF1Q8N302 714 aaeCLIP9.79□□□□□ -0.84
CLK3-208ENST00000562626 OR52K1Q8NGK4 314 aa9.79□□□□□ -0.84
CLK3-208ENST00000562626 CPT1BQ92523 772 aa9.79□□□□□ -0.84
CLK3-208ENST00000562626 FOXJ1Q92949 421 aa9.79□□□□□ -0.84
CLK3-208ENST00000562626 SLCO2A1Q92959 643 aa9.79□□□□□ -0.84
CLK3-208ENST00000562626 SCAMP4Q969E2 229 aa9.79□□□□□ -0.84
CLK3-208ENST00000562626 DTD2Q96FN9 168 aa9.79□□□□□ -0.84
CLK3-208ENST00000562626 LOXL4Q96JB6 756 aa9.79□□□□□ -0.84
CLK3-208ENST00000562626 KRT12Q99456 494 aa9.79□□□□□ -0.84
CLK3-208ENST00000562626 CAPN10Q9HC96 672 aa9.79□□□□□ -0.84
CLK3-208ENST00000562626 HOMER3Q9NSC5 361 aa9.79□□□□□ -0.84
CLK3-208ENST00000562626 HAUS2Q9NVX0 235 aa9.79□□□□□ -0.84
CLK3-208ENST00000562626 RAB23Q9ULC3 237 aa9.79□□□□□ -0.84
CLK3-208ENST00000562626 AAR2Q9Y312 384 aaKnown RBP9.79□□□□□ -0.84
CLK3-208ENST00000562626 MRFAP1Q9Y605 127 aa9.79□□□□□ -0.84
CLK3-208ENST00000562626 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP9.78□□□□□ -0.84
CLK3-208ENST00000562626 GOLGA6L10A0A0M3HER8 536 aa9.78□□□□□ -0.84
CLK3-208ENST00000562626 CCDC78A2IDD5 438 aa9.78□□□□□ -0.84
CLK3-208ENST00000562626 CCDC188H7C350 402 aa9.78□□□□□ -0.84
CLK3-208ENST00000562626 CCL22O00626 93 aa9.78□□□□□ -0.84
CLK3-208ENST00000562626 TP73O15350 636 aa9.78□□□□□ -0.84
CLK3-208ENST00000562626 BCAT2O15382 392 aaPredicted RBP9.78□□□□□ -0.84
CLK3-208ENST00000562626 GPR39O43194 453 aa9.78□□□□□ -0.84
CLK3-208ENST00000562626 RAD51CO43502 376 aa9.78□□□□□ -0.84
CLK3-208ENST00000562626 LZTS3O60299 673 aaPredicted RBP9.78□□□□□ -0.84
CLK3-208ENST00000562626 SUN1O94901 812 aa9.78□□□□□ -0.84
CLK3-208ENST00000562626 FGF1P05230 155 aa9.78□□□□□ -0.84
CLK3-208ENST00000562626 RETP07949 1114 aa9.78□□□□□ -0.84
CLK3-208ENST00000562626 HLA-DPA1P20036 260 aa9.78□□□□□ -0.84
CLK3-208ENST00000562626 HNRNPA2B1P22626 353 aaKnown RBP9.78□□□□□ -0.84
CLK3-208ENST00000562626 CA4P22748 312 aa9.78□□□□□ -0.84
CLK3-208ENST00000562626 FDFT1P37268 417 aa9.78□□□□□ -0.84
CLK3-208ENST00000562626 PAFAH1B1P43034 410 aa9.78□□□□□ -0.84
CLK3-208ENST00000562626 BASP1P80723 227 aaKnown RBP9.78□□□□□ -0.84
CLK3-208ENST00000562626 CCDC15Q0P6D6 951 aa9.78□□□□□ -0.84
CLK3-208ENST00000562626 PTK6Q13882 451 aa9.78□□□□□ -0.84
CLK3-208ENST00000562626 PRPSAP1Q14558 356 aa9.78□□□□□ -0.84
CLK3-208ENST00000562626 AGERQ15109 404 aa9.78□□□□□ -0.84
CLK3-208ENST00000562626 TRIM61Q5EBN2 209 aa9.78□□□□□ -0.84
CLK3-208ENST00000562626 WDR45BQ5MNZ6 344 aa9.78□□□□□ -0.84
CLK3-208ENST00000562626 PRAMEF14Q5SWL7 426 aa9.78□□□□□ -0.84
CLK3-208ENST00000562626 TMC3Q7Z5M5 1100 aa9.78□□□□□ -0.84
CLK3-208ENST00000562626 JAMLQ86YT9 394 aa9.78□□□□□ -0.84
CLK3-208ENST00000562626 GPR26Q8NDV2 337 aa9.78□□□□□ -0.84
CLK3-208ENST00000562626 OR13H1Q8NG92 308 aa9.78□□□□□ -0.84
CLK3-208ENST00000562626 BLOC1S5Q8TDH9 187 aa9.78□□□□□ -0.84
CLK3-208ENST00000562626 PTCD2Q8WV60 388 aaKnown RBP9.78□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms