RNA–Protein interactions for RNA: ENST00000562258.5

VPS39-205, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 4,160 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-205ENST00000562258 AP2A1O95782 977 aa9.25□□□□□ -0.93
VPS39-205ENST00000562258 ACP5P13686 325 aa9.25□□□□□ -0.93
VPS39-205ENST00000562258 TFEBP19484 476 aa9.25□□□□□ -0.93
VPS39-205ENST00000562258 ALDH4A1P30038 563 aa9.25□□□□□ -0.93
VPS39-205ENST00000562258 PKN3Q6P5Z2 889 aa9.25□□□□□ -0.93
VPS39-205ENST00000562258 TMEM220Q6QAJ8 160 aa9.25□□□□□ -0.93
VPS39-205ENST00000562258 SCIMPQ6UWF3 145 aa9.25□□□□□ -0.93
VPS39-205ENST00000562258 DCAF4L2Q8NA75 395 aa9.25□□□□□ -0.93
VPS39-205ENST00000562258 OTUB2Q96DC9 234 aa9.25□□□□□ -0.93
VPS39-205ENST00000562258 CLIP3Q96DZ5 547 aa9.25□□□□□ -0.93
VPS39-205ENST00000562258 MAGED4Q96JG8 741 aa9.25□□□□□ -0.93
VPS39-205ENST00000562258 SEMA4BQ9NPR2 832 aaPredicted RBP9.25□□□□□ -0.93
VPS39-205ENST00000562258 FNIP2Q9P278 1114 aa9.25□□□□□ -0.93
VPS39-205ENST00000562258 IL36AQ9UHA7 158 aa9.25□□□□□ -0.93
VPS39-205ENST00000562258 GMNCA6NCL1 334 aa9.25□□□□□ -0.93
VPS39-205ENST00000562258 CES2O00748 559 aa9.25□□□□□ -0.93
VPS39-205ENST00000562258 RAD51BO15315 384 aa9.25□□□□□ -0.93
VPS39-205ENST00000562258 VIPP01282 170 aa9.25□□□□□ -0.93
VPS39-205ENST00000562258 RPL10P27635 214 aaKnown RBP9.25□□□□□ -0.93
VPS39-205ENST00000562258 NMBRP28336 390 aa9.25□□□□□ -0.93
VPS39-205ENST00000562258 SPAM1P38567 509 aa9.25□□□□□ -0.93
VPS39-205ENST00000562258 NEK3P51956 506 aa9.25□□□□□ -0.93
VPS39-205ENST00000562258 CDH13P55290 713 aa9.25□□□□□ -0.93
VPS39-205ENST00000562258 IRF8Q02556 426 aa9.25□□□□□ -0.93
VPS39-205ENST00000562258 CRYMQ14894 314 aa9.25□□□□□ -0.93
VPS39-205ENST00000562258 USP39Q53GS9 565 aaKnown RBP9.25□□□□□ -0.93
VPS39-205ENST00000562258 ZNF776Q68DI1 518 aaPredicted RBP9.25□□□□□ -0.93
VPS39-205ENST00000562258 GALNT13Q8IUC8 556 aa9.25□□□□□ -0.93
VPS39-205ENST00000562258 DENND6AQ8IWF6 608 aa9.25□□□□□ -0.93
VPS39-205ENST00000562258 METTL6Q8TCB7 284 aa9.25□□□□□ -0.93
VPS39-205ENST00000562258 TCP10LQ8TDR4 215 aa9.25□□□□□ -0.93
VPS39-205ENST00000562258 SLC26A7Q8TE54 656 aa9.25□□□□□ -0.93
VPS39-205ENST00000562258 KCTD4Q8WVF5 259 aa9.25□□□□□ -0.93
VPS39-205ENST00000562258 RIOK2Q9BVS4 552 aaKnown RBP9.25□□□□□ -0.93
VPS39-205ENST00000562258 ATG10Q9H0Y0 220 aa9.25□□□□□ -0.93
VPS39-205ENST00000562258 COMMD8Q9NX08 183 aa9.25□□□□□ -0.93
VPS39-205ENST00000562258 AKAP7Q9P0M2 348 aaPredicted RBP9.25□□□□□ -0.93
VPS39-205ENST00000562258 YBX2Q9Y2T7 364 aaKnown RBP9.25□□□□□ -0.93
VPS39-205ENST00000562258 KCTD3Q9Y597 815 aa9.25□□□□□ -0.93
VPS39-205ENST00000562258 SYCE1LA8MT33 242 aa9.25□□□□□ -0.93
VPS39-205ENST00000562258 H3BM21 787 aa9.25□□□□□ -0.93
VPS39-205ENST00000562258 FFAR3O14843 346 aa9.25□□□□□ -0.93
VPS39-205ENST00000562258 GPR42O15529 346 aa9.25□□□□□ -0.93
VPS39-205ENST00000562258 SHBGP04278 402 aa9.25□□□□□ -0.93
VPS39-205ENST00000562258 GNSP15586 552 aa9.25□□□□□ -0.93
VPS39-205ENST00000562258 DGKAP23743 735 aa9.25□□□□□ -0.93
VPS39-205ENST00000562258 CDH5P33151 784 aaPredicted RBP9.25□□□□□ -0.93
VPS39-205ENST00000562258 MNAT1P51948 309 aa9.25□□□□□ -0.93
VPS39-205ENST00000562258 CCNG1P51959 295 aa9.25□□□□□ -0.93
VPS39-205ENST00000562258 MPP1Q00013 466 aa9.25□□□□□ -0.93
VPS39-205ENST00000562258 DUPD1Q68J44 220 aa9.25□□□□□ -0.93
VPS39-205ENST00000562258 RBFAQ8N0V3 343 aa9.25□□□□□ -0.93
VPS39-205ENST00000562258 LRRC39Q96DD0 335 aa9.25□□□□□ -0.93
VPS39-205ENST00000562258 CFHR5Q9BXR6 569 aa9.25□□□□□ -0.93
VPS39-205ENST00000562258 GDE1Q9NZC3 331 aa9.25□□□□□ -0.93
VPS39-205ENST00000562258 DCDC2Q9UHG0 476 aa9.25□□□□□ -0.93
VPS39-205ENST00000562258 SPTAN1Q13813 2472 aaKnown RBP9.25□□□□□ -0.93
VPS39-205ENST00000562258 A0A0U1RQS6 177 aa9.24□□□□□ -0.93
VPS39-205ENST00000562258 TPP1O14773 563 aa9.24□□□□□ -0.93
VPS39-205ENST00000562258 EIF3HO15372 352 aaKnown RBP eCLIP9.24□□□□□ -0.93
VPS39-205ENST00000562258 ALOX15P16050 662 aaPredicted RBP9.24□□□□□ -0.93
VPS39-205ENST00000562258 HTR7P34969 479 aa9.24□□□□□ -0.93
VPS39-205ENST00000562258 SOAT1P35610 550 aa9.24□□□□□ -0.93
VPS39-205ENST00000562258 RPL6Q02878 288 aaKnown RBP9.24□□□□□ -0.93
VPS39-205ENST00000562258 RING1Q06587 406 aa9.24□□□□□ -0.93
VPS39-205ENST00000562258 CDC16Q13042 620 aa9.24□□□□□ -0.93
VPS39-205ENST00000562258 ZBTB17Q13105 803 aa9.24□□□□□ -0.93
VPS39-205ENST00000562258 USP4Q13107 963 aa9.24□□□□□ -0.93
VPS39-205ENST00000562258 WDR93Q6P2C0 686 aa9.24□□□□□ -0.93
VPS39-205ENST00000562258 PCDH20Q8N6Y1 951 aaKnown RBP9.24□□□□□ -0.93
VPS39-205ENST00000562258 ZNF614Q8N883 585 aa9.24□□□□□ -0.93
VPS39-205ENST00000562258 SETD7Q8WTS6 366 aaKnown RBP9.24□□□□□ -0.93
VPS39-205ENST00000562258 ESAMQ96AP7 390 aa9.24□□□□□ -0.93
VPS39-205ENST00000562258 SGSM3Q96HU1 749 aa9.24□□□□□ -0.93
VPS39-205ENST00000562258 LRRC37BQ96QE4 947 aa9.24□□□□□ -0.93
VPS39-205ENST00000562258 CPNE1Q99829 537 aa9.24□□□□□ -0.93
VPS39-205ENST00000562258 ILKAPQ9H0C8 392 aaPredicted RBP9.24□□□□□ -0.93
VPS39-205ENST00000562258 UBE2ZQ9H832 354 aaPredicted RBP9.24□□□□□ -0.93
VPS39-205ENST00000562258 MANSC1Q9H8J5 431 aa9.24□□□□□ -0.93
VPS39-205ENST00000562258 VWA7Q9Y334 891 aa9.24□□□□□ -0.93
VPS39-205ENST00000562258 L3MBTL1Q9Y468 752 aa9.24□□□□□ -0.93
VPS39-205ENST00000562258 SCN4AP35499 1836 aa9.24□□□□□ -0.93
VPS39-205ENST00000562258 WNT9AO14904 365 aa9.24□□□□□ -0.93
VPS39-205ENST00000562258 BGNP21810 368 aa9.24□□□□□ -0.93
VPS39-205ENST00000562258 GPC1P35052 558 aa9.24□□□□□ -0.93
VPS39-205ENST00000562258 SLC6A11P48066 632 aa9.24□□□□□ -0.93
VPS39-205ENST00000562258 C1orf61Q13536 156 aa9.24□□□□□ -0.93
VPS39-205ENST00000562258 EFTUD2Q15029 972 aaKnown RBP eCLIP9.24□□□□□ -0.93
VPS39-205ENST00000562258 NR6A1Q15406 480 aa9.24□□□□□ -0.93
VPS39-205ENST00000562258 GRTP1Q5TC63 336 aa9.24□□□□□ -0.93
VPS39-205ENST00000562258 ANKS6Q68DC2 871 aa9.24□□□□□ -0.93
VPS39-205ENST00000562258 SERPINA9Q86WD7 417 aa9.24□□□□□ -0.93
VPS39-205ENST00000562258 CYP4X1Q8N118 509 aa9.24□□□□□ -0.93
VPS39-205ENST00000562258 PQLC3Q8N755 202 aa9.24□□□□□ -0.93
VPS39-205ENST00000562258 NIPA2Q8N8Q9 360 aa9.24□□□□□ -0.93
VPS39-205ENST00000562258 OVCA2Q8WZ82 227 aa9.24□□□□□ -0.93
VPS39-205ENST00000562258 RNF31Q96EP0 1072 aa9.24□□□□□ -0.93
VPS39-205ENST00000562258 FAM126AQ9BYI3 521 aaPredicted RBP9.24□□□□□ -0.93
VPS39-205ENST00000562258 WDR41Q9HAD4 459 aa9.24□□□□□ -0.93
VPS39-205ENST00000562258 WDR6Q9NNW5 1121 aaKnown RBP9.24□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 56.3 ms