RNA–Protein interactions for RNA: ENST00000560467.1

LDLR-212, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 928 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-212ENST00000560467 GLOD4Q9HC38 313 aa11.87□□□□□ -0.51
LDLR-212ENST00000560467 XAB2Q9HCS7 855 aaKnown RBP11.87□□□□□ -0.51
LDLR-212ENST00000560467 SUN2Q9UH99 717 aa11.87□□□□□ -0.51
LDLR-212ENST00000560467 TLX3O43711 291 aaPredicted RBP11.86□□□□□ -0.51
LDLR-212ENST00000560467 RFPL3O75679 317 aa11.86□□□□□ -0.51
LDLR-212ENST00000560467 C1QL1O75973 258 aa11.86□□□□□ -0.51
LDLR-212ENST00000560467 JUPP14923 745 aa11.86□□□□□ -0.51
LDLR-212ENST00000560467 TPSB2P20231 275 aa11.86□□□□□ -0.51
LDLR-212ENST00000560467 CTSOP43234 321 aaPredicted RBP11.86□□□□□ -0.51
LDLR-212ENST00000560467 ACADVLP49748 655 aa11.86□□□□□ -0.51
LDLR-212ENST00000560467 RHOAP61586 193 aa11.86□□□□□ -0.51
LDLR-212ENST00000560467 SEMG2Q02383 582 aa11.86□□□□□ -0.51
LDLR-212ENST00000560467 NSUN2Q08J23 767 aaKnown RBP eCLIP11.86□□□□□ -0.51
LDLR-212ENST00000560467 SLC10A7Q0GE19 358 aa11.86□□□□□ -0.51
LDLR-212ENST00000560467 MPP3Q13368 585 aa11.86□□□□□ -0.51
LDLR-212ENST00000560467 SEMA5AQ13591 1074 aa11.86□□□□□ -0.51
LDLR-212ENST00000560467 NAA30Q147X3 362 aaPredicted RBP11.86□□□□□ -0.51
LDLR-212ENST00000560467 TPSAB1Q15661 275 aa11.86□□□□□ -0.51
LDLR-212ENST00000560467 CST6Q15828 149 aa11.86□□□□□ -0.51
LDLR-212ENST00000560467 HIF1AQ16665 826 aa11.86□□□□□ -0.51
LDLR-212ENST00000560467 HNRNPA1L2Q32P51 320 aaKnown RBP11.86□□□□□ -0.51
LDLR-212ENST00000560467 HES3Q5TGS1 186 aa11.86□□□□□ -0.51
LDLR-212ENST00000560467 NAPEPLDQ6IQ20 393 aa11.86□□□□□ -0.51
LDLR-212ENST00000560467 HIBCHQ6NVY1 386 aaPredicted RBP11.86□□□□□ -0.51
LDLR-212ENST00000560467 ARHGAP36Q6ZRI8 547 aa11.86□□□□□ -0.51
LDLR-212ENST00000560467 USP30Q70CQ3 517 aa11.86□□□□□ -0.51
LDLR-212ENST00000560467 CCDC25Q86WR0 208 aa11.86□□□□□ -0.51
LDLR-212ENST00000560467 MMAAQ8IVH4 418 aaKnown RBP11.86□□□□□ -0.51
LDLR-212ENST00000560467 RYBPQ8N488 228 aaPredicted RBP11.86□□□□□ -0.51
LDLR-212ENST00000560467 DNAAF3Q8N9W5 541 aa11.86□□□□□ -0.51
LDLR-212ENST00000560467 TTC17Q96AE7 1141 aa11.86□□□□□ -0.51
LDLR-212ENST00000560467 IFT43Q96FT9 208 aa11.86□□□□□ -0.51
LDLR-212ENST00000560467 MRGPRX3Q96LB0 322 aa11.86□□□□□ -0.51
LDLR-212ENST00000560467 PSKH2Q96QS6 385 aa11.86□□□□□ -0.51
LDLR-212ENST00000560467 FCRL5Q96RD9 977 aa11.86□□□□□ -0.51
LDLR-212ENST00000560467 UBL7Q96S82 380 aaPredicted RBP11.86□□□□□ -0.51
LDLR-212ENST00000560467 CEP41Q9BYV8 373 aa11.86□□□□□ -0.51
LDLR-212ENST00000560467 NEUROG2Q9H2A3 272 aa11.86□□□□□ -0.51
LDLR-212ENST00000560467 ACBD3Q9H3P7 528 aa11.86□□□□□ -0.51
LDLR-212ENST00000560467 EIF2B3Q9NR50 452 aaKnown RBP11.86□□□□□ -0.51
LDLR-212ENST00000560467 AASDHPPTQ9NRN7 309 aa11.86□□□□□ -0.51
LDLR-212ENST00000560467 FAM153AQ9UHL3 310 aa11.86□□□□□ -0.51
LDLR-212ENST00000560467 VPS51Q9UID3 782 aa11.86□□□□□ -0.51
LDLR-212ENST00000560467 INTS6Q9UL03 887 aaKnown RBP11.86□□□□□ -0.51
LDLR-212ENST00000560467 NCKAP1Q9Y2A7 1128 aa11.86□□□□□ -0.51
LDLR-212ENST00000560467 PCDHGA1Q9Y5H4 931 aa11.86□□□□□ -0.51
LDLR-212ENST00000560467 RAI2Q9Y5P3 530 aa11.86□□□□□ -0.51
LDLR-212ENST00000560467 PTPRQQ9UMZ3 2332 aa11.86□□□□□ -0.51
LDLR-212ENST00000560467 ZNF462Q96JM2 2506 aa11.85□□□□□ -0.51
LDLR-212ENST00000560467 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP11.85□□□□□ -0.51
LDLR-212ENST00000560467 A0A1W2PR77 199 aa11.85□□□□□ -0.51
LDLR-212ENST00000560467 TTC34A8MYJ7 566 aa11.85□□□□□ -0.51
LDLR-212ENST00000560467 EIF3HO15372 352 aaKnown RBP eCLIP11.85□□□□□ -0.51
LDLR-212ENST00000560467 KALRNO60229 2985 aa11.85□□□□□ -0.51
LDLR-212ENST00000560467 DFNA5O60443 496 aa11.85□□□□□ -0.51
LDLR-212ENST00000560467 RNASEH2AO75792 299 aaKnown RBP11.85□□□□□ -0.51
LDLR-212ENST00000560467 LDOC1O95751 146 aaPredicted RBP11.85□□□□□ -0.51
LDLR-212ENST00000560467 IGSF6O95976 241 aa11.85□□□□□ -0.51
LDLR-212ENST00000560467 SRPRAP08240 638 aaKnown RBP11.85□□□□□ -0.51
LDLR-212ENST00000560467 NFKB1P19838 968 aa11.85□□□□□ -0.51
LDLR-212ENST00000560467 NFKBIAP25963 317 aa11.85□□□□□ -0.51
LDLR-212ENST00000560467 PSMB4P28070 264 aa11.85□□□□□ -0.51
LDLR-212ENST00000560467 EPHA8P29322 1005 aaPredicted RBP11.85□□□□□ -0.51
LDLR-212ENST00000560467 PSMD8P48556 350 aa11.85□□□□□ -0.51
LDLR-212ENST00000560467 SCNN1BP51168 640 aa11.85□□□□□ -0.51
LDLR-212ENST00000560467 SNRPD1P62314 119 aaKnown RBP11.85□□□□□ -0.51
LDLR-212ENST00000560467 ZBTB17Q13105 803 aa11.85□□□□□ -0.51
LDLR-212ENST00000560467 TARDBPQ13148 414 aaKnown RBP eCLIP11.85□□□□□ -0.51
LDLR-212ENST00000560467 LAMB3Q13751 1172 aa11.85□□□□□ -0.51
LDLR-212ENST00000560467 GRM3Q14832 879 aa11.85□□□□□ -0.51
LDLR-212ENST00000560467 CFAP58Q5T655 872 aa11.85□□□□□ -0.51
LDLR-212ENST00000560467 C9orf64Q5T6V5 341 aa11.85□□□□□ -0.51
LDLR-212ENST00000560467 RNASEH2BQ5TBB1 312 aaKnown RBP11.85□□□□□ -0.51
LDLR-212ENST00000560467 LEKR1Q6ZMV7 388 aa11.85□□□□□ -0.51
LDLR-212ENST00000560467 PRUNE1Q86TP1 453 aa11.85□□□□□ -0.51
LDLR-212ENST00000560467 APCDD1Q8J025 514 aa11.85□□□□□ -0.51
LDLR-212ENST00000560467 NDUFAF2Q8N183 169 aa11.85□□□□□ -0.51
LDLR-212ENST00000560467 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP11.85□□□□□ -0.51
LDLR-212ENST00000560467 EID2Q8N6I1 236 aa11.85□□□□□ -0.51
LDLR-212ENST00000560467 GLIS1Q8NBF1 620 aa11.85□□□□□ -0.51
LDLR-212ENST00000560467 MCUQ8NE86 351 aa11.85□□□□□ -0.51
LDLR-212ENST00000560467 OR2T34Q8NGX1 318 aa11.85□□□□□ -0.51
LDLR-212ENST00000560467 FBXO25Q8TCJ0 367 aa11.85□□□□□ -0.51
LDLR-212ENST00000560467 SAP25Q8TEE9 199 aa11.85□□□□□ -0.51
LDLR-212ENST00000560467 RBM15Q96T37 977 aaKnown RBP eCLIP11.85□□□□□ -0.511e-7■■■■□ 22.9
LDLR-212ENST00000560467 CEP44Q9C0F1 390 aa11.85□□□□□ -0.51
LDLR-212ENST00000560467 BFARQ9NZS9 450 aa11.85□□□□□ -0.51
LDLR-212ENST00000560467 SAMD15Q9P1V8 674 aa11.85□□□□□ -0.51
LDLR-212ENST00000560467 ATP8A1Q9Y2Q0 1164 aa11.85□□□□□ -0.51
LDLR-212ENST00000560467 OR51B4Q9Y5P0 310 aa11.85□□□□□ -0.51
LDLR-212ENST00000560467 ASH1LQ9NR48 2969 aaKnown RBP11.85□□□□□ -0.51
LDLR-212ENST00000560467 MAGEB16A2A368 324 aa11.84□□□□□ -0.51
LDLR-212ENST00000560467 LRRC72A6NJI9 287 aa11.84□□□□□ -0.51
LDLR-212ENST00000560467 C10orf142B7Z368 130 aa11.84□□□□□ -0.51
LDLR-212ENST00000560467 GOLGA8MH3BSY2 632 aa11.84□□□□□ -0.51
LDLR-212ENST00000560467 SNAP91O60641 907 aa11.84□□□□□ -0.51
LDLR-212ENST00000560467 RNASEH1O60930 286 aaKnown RBP11.84□□□□□ -0.51
LDLR-212ENST00000560467 PPFIA2O75334 1257 aa11.84□□□□□ -0.51
LDLR-212ENST00000560467 TMCC1O94876 653 aa11.84□□□□□ -0.51
LDLR-212ENST00000560467 METTL18O95568 372 aa11.84□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms