RNA–Protein interactions for RNA: ENST00000560427.1

NEDD8-208, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 654 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-208ENST00000560427 H0Y8X5 98 aa13.01□□□□□ -0.33
NEDD8-208ENST00000560427 CDX4O14627 284 aaPredicted RBP13.01□□□□□ -0.33
NEDD8-208ENST00000560427 SLC30A4O14863 429 aa13.01□□□□□ -0.33
NEDD8-208ENST00000560427 PSMD3O43242 534 aa13.01□□□□□ -0.33
NEDD8-208ENST00000560427 ATXN1LP0C7T5 689 aaKnown RBP13.01□□□□□ -0.33
NEDD8-208ENST00000560427 GM2AP17900 193 aa13.01□□□□□ -0.33
NEDD8-208ENST00000560427 PSMB4P28070 264 aa13.01□□□□□ -0.33
NEDD8-208ENST00000560427 ARRB1P49407 418 aaPredicted RBP13.01□□□□□ -0.33
NEDD8-208ENST00000560427 CCT8P50990 548 aa13.01□□□□□ -0.33
NEDD8-208ENST00000560427 STC1P52823 247 aa13.01□□□□□ -0.33
NEDD8-208ENST00000560427 GDF10P55107 478 aa13.01□□□□□ -0.33
NEDD8-208ENST00000560427 DPTQ07507 201 aa13.01□□□□□ -0.33
NEDD8-208ENST00000560427 PTK2BQ14289 1009 aa13.01□□□□□ -0.33
NEDD8-208ENST00000560427 GALNT3Q14435 633 aa13.01□□□□□ -0.33
NEDD8-208ENST00000560427 ACOX1Q15067 660 aa13.01□□□□□ -0.33
NEDD8-208ENST00000560427 CDKN3Q16667 212 aa13.01□□□□□ -0.33
NEDD8-208ENST00000560427 HLA-BQ31612 363 aa13.01□□□□□ -0.33
NEDD8-208ENST00000560427 PAPD7Q5XG87 772 aaKnown RBP13.01□□□□□ -0.33
NEDD8-208ENST00000560427 LAYNQ6UX15 382 aa13.01□□□□□ -0.33
NEDD8-208ENST00000560427 Q6ZSR6 202 aa13.01□□□□□ -0.33
NEDD8-208ENST00000560427 PTAR1Q7Z6K3 402 aaPredicted RBP13.01□□□□□ -0.33
NEDD8-208ENST00000560427 TSPAN33Q86UF1 283 aa13.01□□□□□ -0.33
NEDD8-208ENST00000560427 NLRP8Q86W28 1048 aa13.01□□□□□ -0.33
NEDD8-208ENST00000560427 NRSN1Q8IZ57 195 aa13.01□□□□□ -0.33
NEDD8-208ENST00000560427 CCDC89Q8N998 374 aa13.01□□□□□ -0.33
NEDD8-208ENST00000560427 IPMKQ8NFU5 416 aa13.01□□□□□ -0.33
NEDD8-208ENST00000560427 OR13H1Q8NG92 308 aa13.01□□□□□ -0.33
NEDD8-208ENST00000560427 ATL2Q8NHH9 583 aa13.01□□□□□ -0.33
NEDD8-208ENST00000560427 CCHCR1Q8TD31 782 aa13.01□□□□□ -0.33
NEDD8-208ENST00000560427 NUS1Q96E22 293 aa13.01□□□□□ -0.33
NEDD8-208ENST00000560427 GORASP1Q9BQQ3 440 aa13.01□□□□□ -0.33
NEDD8-208ENST00000560427 CDH19Q9H159 772 aa13.01□□□□□ -0.33
NEDD8-208ENST00000560427 GAREM1Q9H706 876 aa13.01□□□□□ -0.33
NEDD8-208ENST00000560427 FSCN3Q9NQT6 498 aa13.01□□□□□ -0.33
NEDD8-208ENST00000560427 RAD18Q9NS91 495 aa13.01□□□□□ -0.33
NEDD8-208ENST00000560427 RXFP3Q9NSD7 469 aa13.01□□□□□ -0.33
NEDD8-208ENST00000560427 UBP1Q9NZI7 540 aa13.01□□□□□ -0.33
NEDD8-208ENST00000560427 HACD3Q9P035 362 aa13.01□□□□□ -0.33
NEDD8-208ENST00000560427 COQ6Q9Y2Z9 468 aa13.01□□□□□ -0.33
NEDD8-208ENST00000560427 PCDHGB2Q9Y5G2 931 aa13.01□□□□□ -0.33
NEDD8-208ENST00000560427 TRPM6Q9BX84 2022 aa13.01□□□□□ -0.33
NEDD8-208ENST00000560427 GON4LQ3T8J9 2241 aa13.01□□□□□ -0.33
NEDD8-208ENST00000560427 C1orf232A0A0U1RR37 186 aa13□□□□□ -0.33
NEDD8-208ENST00000560427 SPTY2D1-AS1A0A0U1RR47 76 aa13□□□□□ -0.33
NEDD8-208ENST00000560427 A0A1B0GTQ1 180 aa13□□□□□ -0.33
NEDD8-208ENST00000560427 POM121BA6NF01 834 aa13□□□□□ -0.33
NEDD8-208ENST00000560427 PCDHGA12O60330 932 aa13□□□□□ -0.33
NEDD8-208ENST00000560427 GDF9O60383 454 aa13□□□□□ -0.33
NEDD8-208ENST00000560427 HOXC4P09017 264 aaPredicted RBP13□□□□□ -0.33
NEDD8-208ENST00000560427 TSHRP16473 764 aa13□□□□□ -0.33
NEDD8-208ENST00000560427 FDFT1P37268 417 aa13□□□□□ -0.33
NEDD8-208ENST00000560427 RXRGP48443 463 aa13□□□□□ -0.33
NEDD8-208ENST00000560427 CLDN2P57739 230 aa13□□□□□ -0.33
NEDD8-208ENST00000560427 SEMG2Q02383 582 aa13□□□□□ -0.33
NEDD8-208ENST00000560427 PTSQ03393 145 aa13□□□□□ -0.33
NEDD8-208ENST00000560427 SLC1A5Q15758 541 aa13□□□□□ -0.33
NEDD8-208ENST00000560427 CYP1B1Q16678 543 aa13□□□□□ -0.33
NEDD8-208ENST00000560427 MACC1Q6ZN28 852 aa13□□□□□ -0.33
NEDD8-208ENST00000560427 HSD11B1LQ7Z5J1 315 aa13□□□□□ -0.33
NEDD8-208ENST00000560427 TECPR1Q7Z6L1 1165 aa13□□□□□ -0.33
NEDD8-208ENST00000560427 PARGQ86W56 976 aa13□□□□□ -0.33
NEDD8-208ENST00000560427 PRELID2Q8N945 189 aa13□□□□□ -0.33
NEDD8-208ENST00000560427 RTKNQ9BST9 563 aa13□□□□□ -0.33
NEDD8-208ENST00000560427 LRRC40Q9H9A6 602 aa13□□□□□ -0.33
NEDD8-208ENST00000560427 ZFYVE1Q9HBF4 777 aa13□□□□□ -0.33
NEDD8-208ENST00000560427 MBNL1Q9NR56 388 aaKnown RBP13□□□□□ -0.33
NEDD8-208ENST00000560427 PKD2L2Q9NZM6 624 aa13□□□□□ -0.33
NEDD8-208ENST00000560427 PAK5Q9P286 719 aa13□□□□□ -0.33
NEDD8-208ENST00000560427 NFKBIL1Q9UBC1 381 aaPredicted RBP13□□□□□ -0.33
NEDD8-208ENST00000560427 CA5BQ9Y2D0 317 aa13□□□□□ -0.33
NEDD8-208ENST00000560427 ZNF711Q9Y462 761 aa13□□□□□ -0.33
NEDD8-208ENST00000560427 PI4KAP42356 2102 aa13□□□□□ -0.33
NEDD8-208ENST00000560427 C4orf47A7E2U8 309 aa12.99□□□□□ -0.33
NEDD8-208ENST00000560427 A8MX80 341 aa12.99□□□□□ -0.33
NEDD8-208ENST00000560427 CACNB4O00305 520 aaPredicted RBP12.99□□□□□ -0.33
NEDD8-208ENST00000560427 PDE2AO00408 941 aaPredicted RBP12.99□□□□□ -0.33
NEDD8-208ENST00000560427 IFNB1P01574 187 aa12.99□□□□□ -0.33
NEDD8-208ENST00000560427 PCCBP05166 539 aa12.99□□□□□ -0.33
NEDD8-208ENST00000560427 C1SP09871 688 aa12.99□□□□□ -0.33
NEDD8-208ENST00000560427 HTR1BP28222 390 aa12.99□□□□□ -0.33
NEDD8-208ENST00000560427 ADRA1AP35348 466 aa12.99□□□□□ -0.33
NEDD8-208ENST00000560427 TRIM23P36406 574 aa12.99□□□□□ -0.33
NEDD8-208ENST00000560427 ETV3P41162 512 aa12.99□□□□□ -0.33
NEDD8-208ENST00000560427 THOP1P52888 689 aa12.99□□□□□ -0.33
NEDD8-208ENST00000560427 KIAA1024LP59773 190 aa12.99□□□□□ -0.33
NEDD8-208ENST00000560427 DCDC1P59894 354 aa12.99□□□□□ -0.33
NEDD8-208ENST00000560427 SNX1Q13596 522 aa12.99□□□□□ -0.33
NEDD8-208ENST00000560427 PDE1CQ14123 709 aaPredicted RBP12.99□□□□□ -0.33
NEDD8-208ENST00000560427 SUZ12Q15022 739 aaKnown RBP12.99□□□□□ -0.33
NEDD8-208ENST00000560427 INAVAQ3KP66 663 aa12.99□□□□□ -0.33
NEDD8-208ENST00000560427 SIRPB2Q5JXA9 342 aa12.99□□□□□ -0.33
NEDD8-208ENST00000560427 ZDHHC20Q5W0Z9 365 aa12.99□□□□□ -0.33
NEDD8-208ENST00000560427 KCTD11Q693B1 232 aa12.99□□□□□ -0.33
NEDD8-208ENST00000560427 RANBP10Q6VN20 620 aa12.99□□□□□ -0.33
NEDD8-208ENST00000560427 KDELC2Q7Z4H8 507 aa12.99□□□□□ -0.33
NEDD8-208ENST00000560427 SPATS2Q86XZ4 545 aaKnown RBP12.99□□□□□ -0.33
NEDD8-208ENST00000560427 SLC22A18ASQ8N1D0 253 aa12.99□□□□□ -0.33
NEDD8-208ENST00000560427 COG1Q8WTW3 980 aa12.99□□□□□ -0.33
NEDD8-208ENST00000560427 TBATAQ96M53 351 aa12.99□□□□□ -0.33
NEDD8-208ENST00000560427 WDR24Q96S15 920 aa12.99□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 53.1 ms