RNA–Protein interactions for RNA: ENST00000558836.5

CUX1-217, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 2,965 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-217ENST00000558836 TM6SF2Q9BZW4 377 aa10.63□□□□□ -0.71
CUX1-217ENST00000558836 C1orf21Q9H246 121 aa10.63□□□□□ -0.71
CUX1-217ENST00000558836 STOML1Q9UBI4 398 aa10.63□□□□□ -0.71
CUX1-217ENST00000558836 SEPT3Q9UH03 358 aa10.63□□□□□ -0.71
CUX1-217ENST00000558836 CDH22Q9UJ99 828 aa10.63□□□□□ -0.71
CUX1-217ENST00000558836 PTGDR2Q9Y5Y4 395 aa10.63□□□□□ -0.71
CUX1-217ENST00000558836 CCDC189A1A4V9 331 aa10.63□□□□□ -0.71
CUX1-217ENST00000558836 A8MX80 341 aa10.63□□□□□ -0.71
CUX1-217ENST00000558836 UBXN8O00124 270 aa10.63□□□□□ -0.71
CUX1-217ENST00000558836 TBL1XO60907 577 aa10.63□□□□□ -0.71
CUX1-217ENST00000558836 RPP40O75818 363 aaKnown RBP10.63□□□□□ -0.71
CUX1-217ENST00000558836 PRAMEF12O95522 483 aa10.63□□□□□ -0.71
CUX1-217ENST00000558836 NDST3O95803 873 aa10.63□□□□□ -0.71
CUX1-217ENST00000558836 CCL5P13501 91 aa10.63□□□□□ -0.71
CUX1-217ENST00000558836 HLA-DPA1P20036 260 aa10.63□□□□□ -0.71
CUX1-217ENST00000558836 GKP32189 559 aa10.63□□□□□ -0.71
CUX1-217ENST00000558836 ELF1P32519 619 aa10.63□□□□□ -0.71
CUX1-217ENST00000558836 PKNOX1P55347 436 aa10.63□□□□□ -0.71
CUX1-217ENST00000558836 SEMG2Q02383 582 aa10.63□□□□□ -0.71
CUX1-217ENST00000558836 IKBKEQ14164 716 aa10.63□□□□□ -0.71
CUX1-217ENST00000558836 SLC39A5Q6ZMH5 540 aa10.63□□□□□ -0.71
CUX1-217ENST00000558836 LRRC74BQ6ZQY2 392 aa10.63□□□□□ -0.71
CUX1-217ENST00000558836 NET1Q7Z628 596 aaPredicted RBP10.63□□□□□ -0.71
CUX1-217ENST00000558836 TMEM150AQ86TG1 271 aa10.63□□□□□ -0.71
CUX1-217ENST00000558836 CUZD1Q86UP6 607 aa10.63□□□□□ -0.71
CUX1-217ENST00000558836 C2orf15Q8WU43 125 aaKnown RBP10.63□□□□□ -0.71
CUX1-217ENST00000558836 FATE1Q969F0 183 aa10.63□□□□□ -0.71
CUX1-217ENST00000558836 RCN3Q96D15 328 aa10.63□□□□□ -0.71
CUX1-217ENST00000558836 TRIB3Q96RU7 358 aa10.63□□□□□ -0.71
CUX1-217ENST00000558836 GIMAP2Q9UG22 337 aa10.63□□□□□ -0.71
CUX1-217ENST00000558836 AFF4Q9UHB7 1163 aaKnown RBP10.63□□□□□ -0.71
CUX1-217ENST00000558836 RAI2Q9Y5P3 530 aa10.63□□□□□ -0.71
CUX1-217ENST00000558836 USP34Q70CQ2 3546 aa10.63□□□□□ -0.71
CUX1-217ENST00000558836 MYOFQ9NZM1 2061 aa10.63□□□□□ -0.71
CUX1-217ENST00000558836 ANKRD36A6QL64 1941 aa10.62□□□□□ -0.71
CUX1-217ENST00000558836 KDELR3O43731 214 aa10.62□□□□□ -0.71
CUX1-217ENST00000558836 CD160O95971 181 aa10.62□□□□□ -0.71
CUX1-217ENST00000558836 GNRH1P01148 92 aa10.62□□□□□ -0.71
CUX1-217ENST00000558836 LMNAP02545 664 aaKnown RBP10.62□□□□□ -0.71
CUX1-217ENST00000558836 ATP5BP06576 529 aaKnown RBP10.62□□□□□ -0.71
CUX1-217ENST00000558836 ACRP10323 421 aa10.62□□□□□ -0.71
CUX1-217ENST00000558836 MYL4P12829 197 aa10.62□□□□□ -0.71
CUX1-217ENST00000558836 CTPS1P17812 591 aa10.62□□□□□ -0.71
CUX1-217ENST00000558836 SP100P23497 879 aaPredicted RBP10.62□□□□□ -0.71
CUX1-217ENST00000558836 ITGB8P26012 769 aa10.62□□□□□ -0.71
CUX1-217ENST00000558836 PRKAA2P54646 552 aa10.62□□□□□ -0.71
CUX1-217ENST00000558836 PFKPQ01813 784 aa10.62□□□□□ -0.71
CUX1-217ENST00000558836 NSUN2Q08J23 767 aaKnown RBP eCLIP10.62□□□□□ -0.71
CUX1-217ENST00000558836 OR4D1Q15615 310 aa10.62□□□□□ -0.71
CUX1-217ENST00000558836 PFKFB4Q16877 469 aa10.62□□□□□ -0.71
CUX1-217ENST00000558836 C6orf163Q5TEZ5 329 aa10.62□□□□□ -0.71
CUX1-217ENST00000558836 CXorf57Q6NSI4 855 aaKnown RBP10.62□□□□□ -0.71
CUX1-217ENST00000558836 KBTBD2Q8IY47 623 aa10.62□□□□□ -0.71
CUX1-217ENST00000558836 PIANPQ8IYJ0 282 aa10.62□□□□□ -0.71
CUX1-217ENST00000558836 DNAJC9Q8WXX5 260 aa10.62□□□□□ -0.71
CUX1-217ENST00000558836 ESAMQ96AP7 390 aa10.62□□□□□ -0.71
CUX1-217ENST00000558836 NSUN5Q96P11 429 aaKnown RBP10.62□□□□□ -0.71
CUX1-217ENST00000558836 NPAS2Q99743 824 aa10.62□□□□□ -0.71
CUX1-217ENST00000558836 CFHR5Q9BXR6 569 aa10.62□□□□□ -0.71
CUX1-217ENST00000558836 ZNF334Q9HCZ1 680 aaPredicted RBP10.62□□□□□ -0.71
CUX1-217ENST00000558836 PAK6Q9NQU5 681 aaPredicted RBP10.62□□□□□ -0.71
CUX1-217ENST00000558836 STX18Q9P2W9 335 aaKnown RBP10.62□□□□□ -0.71
CUX1-217ENST00000558836 IKZF3Q9UKT9 509 aa10.62□□□□□ -0.71
CUX1-217ENST00000558836 ARHGAP26Q9UNA1 814 aa10.62□□□□□ -0.71
CUX1-217ENST00000558836 RPL26L1Q9UNX3 145 aaKnown RBP10.62□□□□□ -0.71
CUX1-217ENST00000558836 COPG1Q9Y678 874 aaKnown RBP10.62□□□□□ -0.71
CUX1-217ENST00000558836 NRG2O14511 850 aaPredicted RBP10.62□□□□□ -0.71
CUX1-217ENST00000558836 NVLO15381 856 aaKnown RBP10.62□□□□□ -0.71
CUX1-217ENST00000558836 CLDN11O75508 207 aa10.62□□□□□ -0.71
CUX1-217ENST00000558836 ABLIM3O94929 683 aa10.62□□□□□ -0.71
CUX1-217ENST00000558836 CXCL10P02778 98 aa10.62□□□□□ -0.71
CUX1-217ENST00000558836 ENO3P13929 434 aaPredicted RBP10.62□□□□□ -0.71
CUX1-217ENST00000558836 TCN1P20061 433 aaPredicted RBP10.62□□□□□ -0.71
CUX1-217ENST00000558836 APLP1P51693 650 aa10.62□□□□□ -0.71
CUX1-217ENST00000558836 NME5P56597 212 aa10.62□□□□□ -0.71
CUX1-217ENST00000558836 BTKQ06187 659 aa10.62□□□□□ -0.71
CUX1-217ENST00000558836 ACAP2Q15057 778 aa10.62□□□□□ -0.71
CUX1-217ENST00000558836 MRNIPQ6NTE8 343 aa10.62□□□□□ -0.71
CUX1-217ENST00000558836 PSAPL1Q6NUJ1 521 aa10.62□□□□□ -0.71
CUX1-217ENST00000558836 PAQR3Q6TCH7 311 aa10.62□□□□□ -0.71
CUX1-217ENST00000558836 PIWIL4Q7Z3Z4 852 aaKnown RBP10.62□□□□□ -0.71
CUX1-217ENST00000558836 BBS5Q8N3I7 341 aa10.62□□□□□ -0.71
CUX1-217ENST00000558836 TSPAN17Q96FV3 270 aa10.62□□□□□ -0.71
CUX1-217ENST00000558836 SMG9Q9H0W8 520 aaKnown RBP10.62□□□□□ -0.71
CUX1-217ENST00000558836 FBRSL1Q9HCM7 1045 aaKnown RBP10.62□□□□□ -0.71
CUX1-217ENST00000558836 FKBPLQ9UIM3 349 aa10.62□□□□□ -0.71
CUX1-217ENST00000558836 VPS28Q9UK41 221 aa10.62□□□□□ -0.71
CUX1-217ENST00000558836 LRRC42Q9Y546 428 aa10.62□□□□□ -0.71
CUX1-217ENST00000558836 CHD5Q8TDI0 1954 aa10.62□□□□□ -0.71
CUX1-217ENST00000558836 A0A1B0GTL3 188 aa10.62□□□□□ -0.71
CUX1-217ENST00000558836 IQCF5A8MTL0 148 aa10.62□□□□□ -0.71
CUX1-217ENST00000558836 SDHDO14521 159 aa10.62□□□□□ -0.71
CUX1-217ENST00000558836 TMCC1O94876 653 aa10.62□□□□□ -0.71
CUX1-217ENST00000558836 SOD2P04179 222 aa10.62□□□□□ -0.71
CUX1-217ENST00000558836 ANPEPP15144 967 aa10.62□□□□□ -0.71
CUX1-217ENST00000558836 CD1DP15813 335 aa10.62□□□□□ -0.71
CUX1-217ENST00000558836 POLD2P49005 469 aa10.62□□□□□ -0.71
CUX1-217ENST00000558836 CYP4F8P98187 520 aa10.62□□□□□ -0.71
CUX1-217ENST00000558836 TRAF2Q12933 501 aa10.62□□□□□ -0.71
CUX1-217ENST00000558836 PDAP1Q13442 181 aaKnown RBP10.62□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms