RNA–Protein interactions for RNA: ENST00000557433.5

SHMT2-231, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 1,904 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-231ENST00000557433 IPPQ9Y573 584 aa16.3■□□□□ 0.2
SHMT2-231ENST00000557433 SNX10Q9Y5X0 201 aa16.3■□□□□ 0.2
SHMT2-231ENST00000557433 SHROOM3Q8TF72 1996 aa16.3■□□□□ 0.2
SHMT2-231ENST00000557433 UBFD1O14562 309 aaKnown RBP16.29■□□□□ 0.2
SHMT2-231ENST00000557433 CLOCKO15516 846 aa16.29■□□□□ 0.2
SHMT2-231ENST00000557433 NOL3O60936 208 aaKnown RBP16.29■□□□□ 0.2
SHMT2-231ENST00000557433 IDO1P14902 403 aa16.29■□□□□ 0.2
SHMT2-231ENST00000557433 YWHAQP27348 245 aa16.29■□□□□ 0.2
SHMT2-231ENST00000557433 PCSK1P29120 753 aa16.29■□□□□ 0.2
SHMT2-231ENST00000557433 ENTPD1P49961 510 aa16.29■□□□□ 0.2
SHMT2-231ENST00000557433 SERPINH1P50454 418 aaKnown RBP16.29■□□□□ 0.2
SHMT2-231ENST00000557433 C16orf72Q14CZ0 275 aa16.29■□□□□ 0.2
SHMT2-231ENST00000557433 MANEALQ5VSG8 457 aa16.29■□□□□ 0.2
SHMT2-231ENST00000557433 AFMIDQ63HM1 303 aa16.29■□□□□ 0.2
SHMT2-231ENST00000557433 PTRH1Q86Y79 214 aaKnown RBP16.29■□□□□ 0.2
SHMT2-231ENST00000557433 RNF135Q8IUD6 432 aa16.29■□□□□ 0.2
SHMT2-231ENST00000557433 CILP2Q8IUL8 1156 aa16.29■□□□□ 0.2
SHMT2-231ENST00000557433 DHRSXQ8N5I4 330 aa16.29■□□□□ 0.2
SHMT2-231ENST00000557433 OR6J1Q8NGC5 347 aa16.29■□□□□ 0.2
SHMT2-231ENST00000557433 OR9I1Q8NGQ6 314 aa16.29■□□□□ 0.2
SHMT2-231ENST00000557433 PHF21BQ96EK2 531 aa16.29■□□□□ 0.2
SHMT2-231ENST00000557433 THAP11Q96EK4 314 aa16.29■□□□□ 0.2
SHMT2-231ENST00000557433 UNKQ9C0B0 810 aaKnown RBP16.29■□□□□ 0.2
SHMT2-231ENST00000557433 MFSD1Q9H3U5 465 aa16.29■□□□□ 0.2
SHMT2-231ENST00000557433 SDR39U1Q9NRG7 319 aaPredicted RBP16.29■□□□□ 0.2
SHMT2-231ENST00000557433 INTS10Q9NVR2 710 aaKnown RBP16.29■□□□□ 0.2
SHMT2-231ENST00000557433 SMPD3Q9NY59 655 aaPredicted RBP16.29■□□□□ 0.2
SHMT2-231ENST00000557433 EBF1Q9UH73 591 aa16.29■□□□□ 0.2
SHMT2-231ENST00000557433 H0YAE9 185 aa16.29■□□□□ 0.2
SHMT2-231ENST00000557433 NR5A2O00482 541 aa16.29■□□□□ 0.2
SHMT2-231ENST00000557433 GIPC1O14908 333 aa16.29■□□□□ 0.2
SHMT2-231ENST00000557433 PMPCBO75439 489 aa16.29■□□□□ 0.2
SHMT2-231ENST00000557433 HLA-DQB2P05538 268 aa16.29■□□□□ 0.2
SHMT2-231ENST00000557433 ALDOCP09972 364 aaKnown RBP16.29■□□□□ 0.2
SHMT2-231ENST00000557433 GFAPP14136 432 aa16.29■□□□□ 0.2
SHMT2-231ENST00000557433 LBPP18428 481 aa16.29■□□□□ 0.2
SHMT2-231ENST00000557433 NELFEP18615 380 aaKnown RBP16.29■□□□□ 0.2
SHMT2-231ENST00000557433 CD97P48960 835 aa16.29■□□□□ 0.2
SHMT2-231ENST00000557433 WNT3AP56704 352 aa16.29■□□□□ 0.2
SHMT2-231ENST00000557433 NRG1Q02297 640 aaPredicted RBP16.29■□□□□ 0.2
SHMT2-231ENST00000557433 EIF4EBP2Q13542 120 aaPredicted RBP16.29■□□□□ 0.2
SHMT2-231ENST00000557433 DUS1LQ6P1R4 473 aaKnown RBP16.29■□□□□ 0.2
SHMT2-231ENST00000557433 KDELC1Q6UW63 502 aa16.29■□□□□ 0.2
SHMT2-231ENST00000557433 LYSMD3Q7Z3D4 306 aa16.29■□□□□ 0.2
SHMT2-231ENST00000557433 ISCA2Q86U28 154 aa16.29■□□□□ 0.2
SHMT2-231ENST00000557433 PDPRQ8NCN5 879 aa16.29■□□□□ 0.2
SHMT2-231ENST00000557433 DQX1Q8TE96 717 aaKnown RBP16.29■□□□□ 0.2
SHMT2-231ENST00000557433 EDEM1Q92611 657 aa16.29■□□□□ 0.2
SHMT2-231ENST00000557433 CCDC68Q9H2F9 335 aa16.29■□□□□ 0.2
SHMT2-231ENST00000557433 RNF39Q9H2S5 420 aa16.29■□□□□ 0.2
SHMT2-231ENST00000557433 RPF2Q9H7B2 306 aaKnown RBP16.29■□□□□ 0.2
SHMT2-231ENST00000557433 RNF19AQ9NV58 838 aa16.29■□□□□ 0.2
SHMT2-231ENST00000557433 OSER1Q9NX31 292 aa16.29■□□□□ 0.2
SHMT2-231ENST00000557433 STT3AP46977 705 aa16.28■□□□□ 0.2
SHMT2-231ENST00000557433 FSCN1Q16658 493 aaKnown RBP16.28■□□□□ 0.2
SHMT2-231ENST00000557433 KANK2Q63ZY3 851 aa16.28■□□□□ 0.2
SHMT2-231ENST00000557433 IQSEC1Q6DN90 963 aa16.28■□□□□ 0.2
SHMT2-231ENST00000557433 OGFOD2Q6N063 350 aa16.28■□□□□ 0.2
SHMT2-231ENST00000557433 ARHGAP36Q6ZRI8 547 aa16.28■□□□□ 0.2
SHMT2-231ENST00000557433 EFL1Q7Z2Z2 1120 aaKnown RBP16.28■□□□□ 0.2
SHMT2-231ENST00000557433 SPATA19Q7Z5L4 167 aa16.28■□□□□ 0.2
SHMT2-231ENST00000557433 SPPL2CQ8IUH8 684 aa16.28■□□□□ 0.2
SHMT2-231ENST00000557433 SULF1Q8IWU6 871 aa16.28■□□□□ 0.2
SHMT2-231ENST00000557433 RHEBL1Q8TAI7 183 aa16.28■□□□□ 0.2
SHMT2-231ENST00000557433 OSCP1Q8WVF1 389 aa16.28■□□□□ 0.2
SHMT2-231ENST00000557433 PEX13Q92968 403 aa16.28■□□□□ 0.2
SHMT2-231ENST00000557433 LRRC58Q96CX6 371 aa16.28■□□□□ 0.2
SHMT2-231ENST00000557433 COX4I2Q96KJ9 171 aa16.28■□□□□ 0.2
SHMT2-231ENST00000557433 SLC39A8Q9C0K1 460 aa16.28■□□□□ 0.2
SHMT2-231ENST00000557433 FADS3Q9Y5Q0 445 aa16.28■□□□□ 0.2
SHMT2-231ENST00000557433 WASH4PA8MWX3 477 aa16.27■□□□□ 0.2
SHMT2-231ENST00000557433 FXYD1O00168 92 aa16.27■□□□□ 0.2
SHMT2-231ENST00000557433 AZIN1O14977 448 aa16.27■□□□□ 0.2
SHMT2-231ENST00000557433 ARPC2O15144 300 aa16.27■□□□□ 0.2
SHMT2-231ENST00000557433 ACOX3O15254 700 aa16.27■□□□□ 0.2
SHMT2-231ENST00000557433 IRAK2O43187 625 aa16.27■□□□□ 0.2
SHMT2-231ENST00000557433 SMIM10L2AP0DMW4 78 aa16.27■□□□□ 0.2
SHMT2-231ENST00000557433 SMIM10L2BP0DMW5 78 aa16.27■□□□□ 0.2
SHMT2-231ENST00000557433 SLC6A2P23975 617 aa16.27■□□□□ 0.2
SHMT2-231ENST00000557433 RFC2P35250 354 aa16.27■□□□□ 0.2
SHMT2-231ENST00000557433 HLCSP50747 726 aa16.27■□□□□ 0.2
SHMT2-231ENST00000557433 PLK1P53350 603 aa16.27■□□□□ 0.2
SHMT2-231ENST00000557433 EEFSECP57772 596 aaKnown RBP16.27■□□□□ 0.2
SHMT2-231ENST00000557433 CCNYL2Q5T2Q4 361 aa16.27■□□□□ 0.2
SHMT2-231ENST00000557433 CLEC6AQ6EIG7 209 aa16.27■□□□□ 0.2
SHMT2-231ENST00000557433 CMTR2Q8IYT2 770 aaKnown RBP16.27■□□□□ 0.2
SHMT2-231ENST00000557433 DCP1BQ8IZD4 617 aaKnown RBP16.27■□□□□ 0.2
SHMT2-231ENST00000557433 SMG8Q8ND04 991 aaKnown RBP16.27■□□□□ 0.2
SHMT2-231ENST00000557433 GPRC5AQ8NFJ5 357 aa16.27■□□□□ 0.2
SHMT2-231ENST00000557433 ZC3H15Q8WU90 426 aaKnown RBP16.27■□□□□ 0.2
SHMT2-231ENST00000557433 HDAC10Q969S8 669 aa16.27■□□□□ 0.2
SHMT2-231ENST00000557433 DCPSQ96C86 337 aaKnown RBP16.27■□□□□ 0.2
SHMT2-231ENST00000557433 TSPYL2Q9H2G4 693 aaPredicted RBP16.27■□□□□ 0.2
SHMT2-231ENST00000557433 ALG9Q9H6U8 611 aa16.27■□□□□ 0.2
SHMT2-231ENST00000557433 PFDN4Q9NQP4 134 aa16.27■□□□□ 0.2
SHMT2-231ENST00000557433 CMTM6Q9NX76 183 aa16.27■□□□□ 0.2
SHMT2-231ENST00000557433 ZNF639Q9UID6 485 aa16.27■□□□□ 0.2
SHMT2-231ENST00000557433 PCDHA9Q9Y5H5 950 aa16.27■□□□□ 0.2
SHMT2-231ENST00000557433 DNAJC15Q9Y5T4 150 aa16.27■□□□□ 0.2
SHMT2-231ENST00000557433 MYBPHLA2RUH7 354 aa16.27■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms