RNA–Protein interactions for RNA: ENST00000557427.5

SHMT2-230, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 569 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-230ENST00000557427 IL1BP01584 269 aa12.63□□□□□ -0.39
SHMT2-230ENST00000557427 RHOCP08134 193 aa12.63□□□□□ -0.39
SHMT2-230ENST00000557427 ALPPL2P10696 532 aa12.63□□□□□ -0.39
SHMT2-230ENST00000557427 POU3F2P20265 443 aaPredicted RBP12.63□□□□□ -0.39
SHMT2-230ENST00000557427 ADRA1BP35368 520 aa12.63□□□□□ -0.39
SHMT2-230ENST00000557427 CASRP41180 1078 aa12.63□□□□□ -0.39
SHMT2-230ENST00000557427 CETN2P41208 172 aa12.63□□□□□ -0.39
SHMT2-230ENST00000557427 COPS2P61201 443 aa12.63□□□□□ -0.39
SHMT2-230ENST00000557427 TRADDQ15628 312 aa12.63□□□□□ -0.39
SHMT2-230ENST00000557427 C5orf22Q49AR2 442 aa12.63□□□□□ -0.39
SHMT2-230ENST00000557427 SCYL2Q6P3W7 929 aa12.63□□□□□ -0.39
SHMT2-230ENST00000557427 TTC27Q6P3X3 843 aa12.63□□□□□ -0.39
SHMT2-230ENST00000557427 SYDE1Q6ZW31 735 aaPredicted RBP12.63□□□□□ -0.39
SHMT2-230ENST00000557427 BNIPLQ7Z465 357 aa12.63□□□□□ -0.39
SHMT2-230ENST00000557427 VASH2Q86V25 355 aa12.63□□□□□ -0.39
SHMT2-230ENST00000557427 ZNF683Q8IZ20 524 aa12.63□□□□□ -0.39
SHMT2-230ENST00000557427 RCOR2Q8IZ40 523 aa12.63□□□□□ -0.39
SHMT2-230ENST00000557427 IQCKQ8N0W5 287 aa12.63□□□□□ -0.39
SHMT2-230ENST00000557427 KDM1BQ8NB78 822 aa12.63□□□□□ -0.39
SHMT2-230ENST00000557427 FAM172AQ8WUF8 416 aa12.63□□□□□ -0.39
SHMT2-230ENST00000557427 KLK6Q92876 244 aa12.63□□□□□ -0.39
SHMT2-230ENST00000557427 RBM41Q96IZ5 413 aaKnown RBP12.63□□□□□ -0.39
SHMT2-230ENST00000557427 MCEEQ96PE7 176 aa12.63□□□□□ -0.39
SHMT2-230ENST00000557427 HAPLN3Q96S86 360 aa12.63□□□□□ -0.39
SHMT2-230ENST00000557427 TRIM51Q9BSJ1 452 aa12.63□□□□□ -0.39
SHMT2-230ENST00000557427 SPON2Q9BUD6 331 aa12.63□□□□□ -0.39
SHMT2-230ENST00000557427 KDM4CQ9H3R0 1056 aa12.63□□□□□ -0.39
SHMT2-230ENST00000557427 TMEM51Q9NW97 253 aa12.63□□□□□ -0.39
SHMT2-230ENST00000557427 DDX56Q9NY93 547 aaKnown RBP12.63□□□□□ -0.39
SHMT2-230ENST00000557427 SLC25A13Q9UJS0 675 aa12.63□□□□□ -0.39
SHMT2-230ENST00000557427 ACSL6Q9UKU0 697 aa12.63□□□□□ -0.39
SHMT2-230ENST00000557427 SARDHQ9UL12 918 aa12.63□□□□□ -0.39
SHMT2-230ENST00000557427 TBC1D30Q9Y2I9 924 aa12.63□□□□□ -0.39
SHMT2-230ENST00000557427 A0A0D9SEW6 157 aa12.62□□□□□ -0.39
SHMT2-230ENST00000557427 TCRBV7S2A1N4TA0A589 114 aa12.62□□□□□ -0.39
SHMT2-230ENST00000557427 GOLGA8KD6RF30 607 aa12.62□□□□□ -0.39
SHMT2-230ENST00000557427 SLC31A1O15431 190 aa12.62□□□□□ -0.39
SHMT2-230ENST00000557427 SNAP91O60641 907 aa12.62□□□□□ -0.39
SHMT2-230ENST00000557427 TCEA3O75764 348 aa12.62□□□□□ -0.39
SHMT2-230ENST00000557427 MT-CO1P00395 513 aa12.62□□□□□ -0.39
SHMT2-230ENST00000557427 GPD1P21695 349 aa12.62□□□□□ -0.39
SHMT2-230ENST00000557427 OR1E1P30953 314 aa12.62□□□□□ -0.39
SHMT2-230ENST00000557427 PTPN7P35236 360 aa12.62□□□□□ -0.39
SHMT2-230ENST00000557427 NUDT1P36639 197 aa12.62□□□□□ -0.39
SHMT2-230ENST00000557427 TAS2R38P59533 333 aa12.62□□□□□ -0.39
SHMT2-230ENST00000557427 OGDHQ02218 1023 aa12.62□□□□□ -0.39
SHMT2-230ENST00000557427 KLF1Q13351 362 aaPredicted RBP12.62□□□□□ -0.39
SHMT2-230ENST00000557427 DLG2Q15700 870 aa12.62□□□□□ -0.39
SHMT2-230ENST00000557427 CFAP58Q5T655 872 aa12.62□□□□□ -0.39
SHMT2-230ENST00000557427 AGBL4Q5VU57 503 aa12.62□□□□□ -0.39
SHMT2-230ENST00000557427 RWDD4Q6NW29 188 aaKnown RBP12.62□□□□□ -0.39
SHMT2-230ENST00000557427 POLNQ7Z5Q5 900 aa12.62□□□□□ -0.39
SHMT2-230ENST00000557427 B3GNT8Q7Z7M8 397 aa12.62□□□□□ -0.39
SHMT2-230ENST00000557427 GOLGA6L1Q8N7Z2 621 aa12.62□□□□□ -0.39
SHMT2-230ENST00000557427 GRK7Q8WTQ7 553 aa12.62□□□□□ -0.39
SHMT2-230ENST00000557427 LIN37Q96GY3 246 aaPredicted RBP12.62□□□□□ -0.39
SHMT2-230ENST00000557427 PKNOX2Q96KN3 472 aa12.62□□□□□ -0.39
SHMT2-230ENST00000557427 RUFY1Q96T51 708 aa12.62□□□□□ -0.39
SHMT2-230ENST00000557427 DUSP23Q9BVJ7 150 aa12.62□□□□□ -0.39
SHMT2-230ENST00000557427 CALN1Q9BXU9 219 aa12.62□□□□□ -0.39
SHMT2-230ENST00000557427 FZD3Q9NPG1 666 aa12.62□□□□□ -0.39
SHMT2-230ENST00000557427 OR12D3Q9UGF7 316 aa12.62□□□□□ -0.39
SHMT2-230ENST00000557427 FEZ2Q9UHY8 353 aaPredicted RBP12.62□□□□□ -0.39
SHMT2-230ENST00000557427 PLAAQ9Y263 795 aa12.62□□□□□ -0.39
SHMT2-230ENST00000557427 OR51B4Q9Y5P0 310 aa12.62□□□□□ -0.39
SHMT2-230ENST00000557427 NEMP2A6NFY4 417 aa12.61□□□□□ -0.39
SHMT2-230ENST00000557427 FAM72CH0Y354 149 aa12.61□□□□□ -0.39
SHMT2-230ENST00000557427 K7ERQ8 282 aa12.61□□□□□ -0.39
SHMT2-230ENST00000557427 PLD2O14939 933 aa12.61□□□□□ -0.39
SHMT2-230ENST00000557427 ECEL1O95672 775 aa12.61□□□□□ -0.39
SHMT2-230ENST00000557427 HGFP14210 728 aa12.61□□□□□ -0.39
SHMT2-230ENST00000557427 UGT1A5P35504 534 aa12.61□□□□□ -0.39
SHMT2-230ENST00000557427 PTPN9P43378 593 aa12.61□□□□□ -0.39
SHMT2-230ENST00000557427 HDAC4P56524 1084 aa12.61□□□□□ -0.39
SHMT2-230ENST00000557427 CLDN2P57739 230 aa12.61□□□□□ -0.39
SHMT2-230ENST00000557427 SETMARQ53H47 684 aaPredicted RBP12.61□□□□□ -0.39
SHMT2-230ENST00000557427 FAM72AQ5TYM5 149 aa12.61□□□□□ -0.39
SHMT2-230ENST00000557427 FAM72DQ6L9T8 149 aa12.61□□□□□ -0.39
SHMT2-230ENST00000557427 ZCCHC8Q6NZY4 707 aaKnown RBP12.61□□□□□ -0.39
SHMT2-230ENST00000557427 LRIG3Q6UXM1 1119 aa12.61□□□□□ -0.39
SHMT2-230ENST00000557427 LINGO4Q6UY18 593 aa12.61□□□□□ -0.39
SHMT2-230ENST00000557427 FAM72BQ86X60 149 aa12.61□□□□□ -0.39
SHMT2-230ENST00000557427 CCDC185Q8N715 623 aa12.61□□□□□ -0.39
SHMT2-230ENST00000557427 ATP11CQ8NB49 1132 aa12.61□□□□□ -0.39
SHMT2-230ENST00000557427 ZNF548Q8NEK5 533 aaPredicted RBP12.61□□□□□ -0.39
SHMT2-230ENST00000557427 OR7D4Q8NG98 312 aa12.61□□□□□ -0.39
SHMT2-230ENST00000557427 FRS2Q8WU20 508 aa12.61□□□□□ -0.39
SHMT2-230ENST00000557427 CENPIQ92674 756 aaPredicted RBP12.61□□□□□ -0.39
SHMT2-230ENST00000557427 ZIM3Q96PE6 472 aa12.61□□□□□ -0.39
SHMT2-230ENST00000557427 OSBPL8Q9BZF1 889 aa12.61□□□□□ -0.39
SHMT2-230ENST00000557427 ZYG11BQ9C0D3 744 aa12.61□□□□□ -0.39
SHMT2-230ENST00000557427 DPH5Q9H2P9 285 aa12.61□□□□□ -0.39
SHMT2-230ENST00000557427 ZDHHC18Q9NUE0 388 aa12.61□□□□□ -0.39
SHMT2-230ENST00000557427 PSD3Q9NYI0 1048 aa12.61□□□□□ -0.39
SHMT2-230ENST00000557427 VPS18Q9P253 973 aa12.61□□□□□ -0.39
SHMT2-230ENST00000557427 KLF15Q9UIH9 416 aa12.61□□□□□ -0.39
SHMT2-230ENST00000557427 LRBAP50851 2863 aa12.61□□□□□ -0.39
SHMT2-230ENST00000557427 IGLV3-10A0A075B6K4 115 aa12.6□□□□□ -0.39
SHMT2-230ENST00000557427 SLC7A4O43246 635 aa12.6□□□□□ -0.39
SHMT2-230ENST00000557427 RNGTTO60942 597 aaKnown RBP12.6□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 54.9 ms