RNA–Protein interactions for RNA: ENST00000557348.5

SHMT2-229, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,659 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-229ENST00000557348 OR13J1Q8NGT2 312 aa12.68□□□□□ -0.38
SHMT2-229ENST00000557348 TTC8Q8TAM2 541 aa12.68□□□□□ -0.38
SHMT2-229ENST00000557348 KCNV2Q8TDN2 545 aa12.68□□□□□ -0.38
SHMT2-229ENST00000557348 MCUR1Q96AQ8 359 aa12.68□□□□□ -0.38
SHMT2-229ENST00000557348 RMDN1Q96DB5 314 aa12.68□□□□□ -0.38
SHMT2-229ENST00000557348 TCF12Q99081 682 aa12.68□□□□□ -0.38
SHMT2-229ENST00000557348 C12orf65Q9H3J6 166 aaKnown RBP12.68□□□□□ -0.38
SHMT2-229ENST00000557348 NMRAL1Q9HBL8 299 aa12.68□□□□□ -0.38
SHMT2-229ENST00000557348 NPHS2Q9NP85 383 aa12.68□□□□□ -0.38
SHMT2-229ENST00000557348 DNMT3BQ9UBC3 853 aaKnown RBP12.68□□□□□ -0.38
SHMT2-229ENST00000557348 SLC2A6Q9UGQ3 507 aa12.68□□□□□ -0.38
SHMT2-229ENST00000557348 VPS51Q9UID3 782 aa12.68□□□□□ -0.38
SHMT2-229ENST00000557348 EMCNQ9ULC0 261 aa12.68□□□□□ -0.38
SHMT2-229ENST00000557348 PTPRSQ13332 1948 aa12.67□□□□□ -0.38
SHMT2-229ENST00000557348 LINC01553A4QN01 128 aa12.67□□□□□ -0.38
SHMT2-229ENST00000557348 CCL16O15467 120 aa12.67□□□□□ -0.38
SHMT2-229ENST00000557348 CSKP41240 450 aa12.67□□□□□ -0.38
SHMT2-229ENST00000557348 GRIA4P48058 902 aa12.67□□□□□ -0.38
SHMT2-229ENST00000557348 HK2P52789 917 aa12.67□□□□□ -0.38
SHMT2-229ENST00000557348 ARFIP2P53365 341 aa12.67□□□□□ -0.38
SHMT2-229ENST00000557348 CTBP1Q13363 440 aa12.67□□□□□ -0.38
SHMT2-229ENST00000557348 PCLAFQ15004 111 aa12.67□□□□□ -0.38
SHMT2-229ENST00000557348 FAM83EQ2M2I3 478 aa12.67□□□□□ -0.38
SHMT2-229ENST00000557348 GPR158Q5T848 1215 aa12.67□□□□□ -0.38
SHMT2-229ENST00000557348 MBLAC2Q68D91 279 aa12.67□□□□□ -0.38
SHMT2-229ENST00000557348 FAM45BPQ6NSW5 357 aa12.67□□□□□ -0.38
SHMT2-229ENST00000557348 AFTPHQ6ULP2 937 aa12.67□□□□□ -0.38
SHMT2-229ENST00000557348 GLT6D1Q7Z4J2 308 aa12.67□□□□□ -0.38
SHMT2-229ENST00000557348 TMPRSS6Q8IU80 811 aa12.67□□□□□ -0.38
SHMT2-229ENST00000557348 WDR75Q8IWA0 830 aaKnown RBP12.67□□□□□ -0.38
SHMT2-229ENST00000557348 C7orf61Q8IZ16 206 aa12.67□□□□□ -0.38
SHMT2-229ENST00000557348 ST13P4Q8IZP2 240 aaPredicted RBP12.67□□□□□ -0.38
SHMT2-229ENST00000557348 HS6ST3Q8IZP7 471 aa12.67□□□□□ -0.38
SHMT2-229ENST00000557348 OR6P1Q8NGX9 317 aa12.67□□□□□ -0.38
SHMT2-229ENST00000557348 FAM45AQ8TCE6 357 aa12.67□□□□□ -0.38
SHMT2-229ENST00000557348 BLOC1S5Q8TDH9 187 aa12.67□□□□□ -0.38
SHMT2-229ENST00000557348 WBP2Q969T9 261 aa12.67□□□□□ -0.38
SHMT2-229ENST00000557348 PTCD3Q96EY7 689 aaKnown RBP12.67□□□□□ -0.38
SHMT2-229ENST00000557348 ALG14Q96F25 216 aa12.67□□□□□ -0.38
SHMT2-229ENST00000557348 ATXN7L3BQ96GX2 97 aa12.67□□□□□ -0.38
SHMT2-229ENST00000557348 ELMO2Q96JJ3 720 aa12.67□□□□□ -0.38
SHMT2-229ENST00000557348 WWP1Q9H0M0 922 aa12.67□□□□□ -0.38
SHMT2-229ENST00000557348 C1orf21Q9H246 121 aa12.67□□□□□ -0.38
SHMT2-229ENST00000557348 POPDC3Q9HBV1 291 aa12.67□□□□□ -0.38
SHMT2-229ENST00000557348 ALG13Q9NP73 1137 aaKnown RBP12.67□□□□□ -0.38
SHMT2-229ENST00000557348 MAN1C1Q9NR34 630 aa12.67□□□□□ -0.38
SHMT2-229ENST00000557348 INTS10Q9NVR2 710 aaKnown RBP12.67□□□□□ -0.38
SHMT2-229ENST00000557348 NLE1Q9NVX2 485 aaPredicted RBP12.67□□□□□ -0.38
SHMT2-229ENST00000557348 GGT7Q9UJ14 662 aa12.67□□□□□ -0.38
SHMT2-229ENST00000557348 TRIM33Q9UPN9 1127 aa12.67□□□□□ -0.38
SHMT2-229ENST00000557348 RAI2Q9Y5P3 530 aa12.67□□□□□ -0.38
SHMT2-229ENST00000557348 ANAPC1Q9H1A4 1944 aa12.67□□□□□ -0.38
SHMT2-229ENST00000557348 SLC9A3R1O14745 358 aaPredicted RBP12.67□□□□□ -0.38
SHMT2-229ENST00000557348 GYG2O15488 501 aa12.67□□□□□ -0.38
SHMT2-229ENST00000557348 SOCS5O75159 536 aa12.67□□□□□ -0.38
SHMT2-229ENST00000557348 KLHL2O95198 593 aa12.67□□□□□ -0.38
SHMT2-229ENST00000557348 PDHA1P08559 390 aa12.67□□□□□ -0.38
SHMT2-229ENST00000557348 PABPC4LP0CB38 370 aaKnown RBP12.67□□□□□ -0.38
SHMT2-229ENST00000557348 MYL2P10916 166 aa12.67□□□□□ -0.38
SHMT2-229ENST00000557348 EN2P19622 333 aaPredicted RBP12.67□□□□□ -0.38
SHMT2-229ENST00000557348 AP2B1P63010 937 aa12.67□□□□□ -0.38
SHMT2-229ENST00000557348 SULT2A1Q06520 285 aa12.67□□□□□ -0.38
SHMT2-229ENST00000557348 DMC1Q14565 340 aa12.67□□□□□ -0.38
SHMT2-229ENST00000557348 TBC1D25Q3MII6 688 aa12.67□□□□□ -0.38
SHMT2-229ENST00000557348 AARS2Q5JTZ9 985 aaKnown RBP12.67□□□□□ -0.38
SHMT2-229ENST00000557348 AGAP9Q5VTM2 703 aa12.67□□□□□ -0.38
SHMT2-229ENST00000557348 NCEH1Q6PIU2 408 aa12.67□□□□□ -0.38
SHMT2-229ENST00000557348 DENND6AQ8IWF6 608 aa12.67□□□□□ -0.38
SHMT2-229ENST00000557348 BBS7Q8IWZ6 715 aa12.67□□□□□ -0.38
SHMT2-229ENST00000557348 HDAC10Q969S8 669 aa12.67□□□□□ -0.38
SHMT2-229ENST00000557348 CCDC126Q96EE4 140 aa12.67□□□□□ -0.38
SHMT2-229ENST00000557348 SPATA16Q9BXB7 569 aa12.67□□□□□ -0.38
SHMT2-229ENST00000557348 SLC46A2Q9BY10 475 aa12.67□□□□□ -0.38
SHMT2-229ENST00000557348 CATSPERZQ9NTU4 200 aa12.67□□□□□ -0.38
SHMT2-229ENST00000557348 ABCB8Q9NUT2 735 aa12.67□□□□□ -0.38
SHMT2-229ENST00000557348 TMEM216Q9P0N5 145 aa12.67□□□□□ -0.38
SHMT2-229ENST00000557348 LHX3Q9UBR4 397 aa12.67□□□□□ -0.38
SHMT2-229ENST00000557348 CCDC78A2IDD5 438 aa12.66□□□□□ -0.38
SHMT2-229ENST00000557348 HIDE1A8MVS5 230 aa12.66□□□□□ -0.38
SHMT2-229ENST00000557348 ANKRD66B4E2M5 251 aa12.66□□□□□ -0.38
SHMT2-229ENST00000557348 GOLGA8TH3BQL2 631 aa12.66□□□□□ -0.38
SHMT2-229ENST00000557348 AP1G1O43747 822 aa12.66□□□□□ -0.38
SHMT2-229ENST00000557348 TRIM13O60858 407 aa12.66□□□□□ -0.38
SHMT2-229ENST00000557348 DLDP09622 509 aaKnown RBP12.66□□□□□ -0.38
SHMT2-229ENST00000557348 SLC35E2BP0CK96 405 aa12.66□□□□□ -0.38
SHMT2-229ENST00000557348 CCDC166P0CW27 439 aa12.66□□□□□ -0.38
SHMT2-229ENST00000557348 RALBP11234 206 aa12.66□□□□□ -0.38
SHMT2-229ENST00000557348 LPOP22079 712 aaPredicted RBP12.66□□□□□ -0.38
SHMT2-229ENST00000557348 GLDCP23378 1020 aa12.66□□□□□ -0.38
SHMT2-229ENST00000557348 GABRB3P28472 473 aa12.66□□□□□ -0.38
SHMT2-229ENST00000557348 MZF1P28698 734 aaPredicted RBP12.66□□□□□ -0.38
SHMT2-229ENST00000557348 ZNF140P52738 457 aaPredicted RBP12.66□□□□□ -0.38
SHMT2-229ENST00000557348 MPP1Q00013 466 aa12.66□□□□□ -0.38
SHMT2-229ENST00000557348 LSAMPQ13449 338 aa12.66□□□□□ -0.38
SHMT2-229ENST00000557348 GALNT3Q14435 633 aa12.66□□□□□ -0.38
SHMT2-229ENST00000557348 RCN1Q15293 331 aa12.66□□□□□ -0.38
SHMT2-229ENST00000557348 KHDC1Q4VXA5 237 aaKnown RBP12.66□□□□□ -0.38
SHMT2-229ENST00000557348 PPM1JQ5JR12 505 aa12.66□□□□□ -0.38
SHMT2-229ENST00000557348 ZYG11AQ6WRX3 759 aa12.66□□□□□ -0.38
SHMT2-229ENST00000557348 SHKBP1Q8TBC3 707 aa12.66□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms