RNA–Protein interactions for RNA: ENST00000556486.5

SCFD1-220, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 974 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-220ENST00000556486 LOXL2Q9Y4K0 774 aa10.12□□□□□ -0.79
SCFD1-220ENST00000556486 FHOD1Q9Y613 1164 aa10.12□□□□□ -0.79
SCFD1-220ENST00000556486 NBASA2RRP1 2371 aa10.12□□□□□ -0.79
SCFD1-220ENST00000556486 A0A1W2PQM1 296 aa10.11□□□□□ -0.79
SCFD1-220ENST00000556486 ZSCAN5CA6NGD5 496 aaPredicted RBP10.11□□□□□ -0.79
SCFD1-220ENST00000556486 IGLON5A6NGN9 336 aa10.11□□□□□ -0.79
SCFD1-220ENST00000556486 NTN3O00634 580 aaPredicted RBP10.11□□□□□ -0.79
SCFD1-220ENST00000556486 TOR1BO14657 336 aa10.11□□□□□ -0.79
SCFD1-220ENST00000556486 FPGTO14772 594 aa10.11□□□□□ -0.79
SCFD1-220ENST00000556486 AREL1O15033 823 aa10.11□□□□□ -0.79
SCFD1-220ENST00000556486 YY2O15391 372 aa10.11□□□□□ -0.79
SCFD1-220ENST00000556486 SRGAP2O75044 1071 aa10.11□□□□□ -0.79
SCFD1-220ENST00000556486 GSRP00390 522 aa10.11□□□□□ -0.79
SCFD1-220ENST00000556486 CYP1A1P04798 512 aaPredicted RBP10.11□□□□□ -0.79
SCFD1-220ENST00000556486 ANXA6P08133 673 aa10.11□□□□□ -0.79
SCFD1-220ENST00000556486 TSHRP16473 764 aa10.11□□□□□ -0.79
SCFD1-220ENST00000556486 EEF1GP26641 437 aaKnown RBP10.11□□□□□ -0.79
SCFD1-220ENST00000556486 PTPN9P43378 593 aa10.11□□□□□ -0.79
SCFD1-220ENST00000556486 GIPRP48546 466 aa10.11□□□□□ -0.79
SCFD1-220ENST00000556486 DNA2P51530 1060 aa10.11□□□□□ -0.79
SCFD1-220ENST00000556486 INHBCP55103 352 aa10.11□□□□□ -0.79
SCFD1-220ENST00000556486 GSCP56915 257 aaPredicted RBP10.11□□□□□ -0.79
SCFD1-220ENST00000556486 RAPGEF1Q13905 1077 aa10.11□□□□□ -0.79
SCFD1-220ENST00000556486 LBRQ14739 615 aaKnown RBP10.11□□□□□ -0.79
SCFD1-220ENST00000556486 TPD52L1Q16890 204 aaPredicted RBP10.11□□□□□ -0.79
SCFD1-220ENST00000556486 DPCR1Q3MIW9 517 aa10.11□□□□□ -0.79
SCFD1-220ENST00000556486 ZNF805Q5CZA5 627 aa10.11□□□□□ -0.79
SCFD1-220ENST00000556486 RPS26P11Q5JNZ5 115 aaPredicted RBP10.11□□□□□ -0.79
SCFD1-220ENST00000556486 FAXCQ5TGI0 409 aa10.11□□□□□ -0.79
SCFD1-220ENST00000556486 BNC2Q6ZN30 1099 aaPredicted RBP10.11□□□□□ -0.79
SCFD1-220ENST00000556486 STRADAQ7RTN6 431 aa10.11□□□□□ -0.79
SCFD1-220ENST00000556486 FAM131BQ86XD5 332 aa10.11□□□□□ -0.79
SCFD1-220ENST00000556486 CREBRFQ8IUR6 639 aa10.11□□□□□ -0.79
SCFD1-220ENST00000556486 PHACTR4Q8IZ21 702 aa10.11□□□□□ -0.79
SCFD1-220ENST00000556486 LILRB2Q8N423 598 aa10.11□□□□□ -0.79
SCFD1-220ENST00000556486 ZSCAN1Q8NBB4 408 aa10.11□□□□□ -0.79
SCFD1-220ENST00000556486 OR2AP1Q8NGE2 309 aa10.11□□□□□ -0.79
SCFD1-220ENST00000556486 PCDH19Q8TAB3 1148 aa10.11□□□□□ -0.79
SCFD1-220ENST00000556486 ZNF564Q8TBZ8 553 aaPredicted RBP10.11□□□□□ -0.79
SCFD1-220ENST00000556486 ARHGEF2Q92974 986 aaKnown RBP10.11□□□□□ -0.79
SCFD1-220ENST00000556486 USP7Q93009 1102 aa10.11□□□□□ -0.79
SCFD1-220ENST00000556486 NTAN1Q96AB6 310 aa10.11□□□□□ -0.79
SCFD1-220ENST00000556486 DNAJC7Q99615 494 aa10.11□□□□□ -0.79
SCFD1-220ENST00000556486 SEMA3CQ99985 751 aa10.11□□□□□ -0.79
SCFD1-220ENST00000556486 STRADBQ9C0K7 418 aa10.11□□□□□ -0.79
SCFD1-220ENST00000556486 MAGEH1Q9H213 219 aa10.11□□□□□ -0.79
SCFD1-220ENST00000556486 PDCL3Q9H2J4 239 aa10.11□□□□□ -0.79
SCFD1-220ENST00000556486 PCDH12Q9NPG4 1184 aa10.11□□□□□ -0.79
SCFD1-220ENST00000556486 GEMIN8Q9NWZ8 242 aaKnown RBP10.11□□□□□ -0.79
SCFD1-220ENST00000556486 HECAQ9UBI9 543 aaPredicted RBP10.11□□□□□ -0.79
SCFD1-220ENST00000556486 SPASTQ9UBP0 616 aa10.11□□□□□ -0.79
SCFD1-220ENST00000556486 OR12D3Q9UGF7 316 aa10.11□□□□□ -0.79
SCFD1-220ENST00000556486 PRKAB1Q9Y478 270 aa10.11□□□□□ -0.79
SCFD1-220ENST00000556486 DAAM1Q9Y4D1 1078 aa10.11□□□□□ -0.79
SCFD1-220ENST00000556486 PCDHGA7Q9Y5G6 932 aa10.11□□□□□ -0.79
SCFD1-220ENST00000556486 ACTL7AQ9Y615 435 aa10.11□□□□□ -0.79
SCFD1-220ENST00000556486 NOTCH2Q04721 2471 aa10.11□□□□□ -0.79
SCFD1-220ENST00000556486 SDK2Q58EX2 2172 aa10.1□□□□□ -0.79
SCFD1-220ENST00000556486 FAM170AA1A519 330 aa10.1□□□□□ -0.79
SCFD1-220ENST00000556486 C2CD4BA6NLJ0 364 aa10.1□□□□□ -0.79
SCFD1-220ENST00000556486 C16orf96A6NNT2 1141 aa10.1□□□□□ -0.79
SCFD1-220ENST00000556486 PPP1R12AO14974 1030 aaPredicted RBP10.1□□□□□ -0.79
SCFD1-220ENST00000556486 MAP3K6O95382 1288 aa10.1□□□□□ -0.79
SCFD1-220ENST00000556486 POP4O95707 220 aaKnown RBP10.1□□□□□ -0.79
SCFD1-220ENST00000556486 MMEP08473 750 aa10.1□□□□□ -0.79
SCFD1-220ENST00000556486 GKP32189 559 aa10.1□□□□□ -0.79
SCFD1-220ENST00000556486 ACVRL1P37023 503 aa10.1□□□□□ -0.79
SCFD1-220ENST00000556486 SUOXP51687 545 aa10.1□□□□□ -0.79
SCFD1-220ENST00000556486 YPEL5P62699 121 aa10.1□□□□□ -0.79
SCFD1-220ENST00000556486 CDR2Q01850 454 aa10.1□□□□□ -0.79
SCFD1-220ENST00000556486 INO80DQ53TQ3 878 aaPredicted RBP10.1□□□□□ -0.79
SCFD1-220ENST00000556486 C2CD6Q53TS8 623 aa10.1□□□□□ -0.79
SCFD1-220ENST00000556486 ESRP1Q6NXG1 681 aaKnown RBP10.1□□□□□ -0.79
SCFD1-220ENST00000556486 RD3Q7Z3Z2 195 aa10.1□□□□□ -0.79
SCFD1-220ENST00000556486 VPS36Q86VN1 386 aa10.1□□□□□ -0.79
SCFD1-220ENST00000556486 SFTPA2Q8IWL1 248 aa10.1□□□□□ -0.79
SCFD1-220ENST00000556486 DRC7Q8IY82 874 aa10.1□□□□□ -0.79
SCFD1-220ENST00000556486 TMEM102Q8N9M5 508 aaPredicted RBP10.1□□□□□ -0.79
SCFD1-220ENST00000556486 OR6K2Q8NGY2 324 aa10.1□□□□□ -0.79
SCFD1-220ENST00000556486 BTN2A2Q8WVV5 523 aa10.1□□□□□ -0.79
SCFD1-220ENST00000556486 CASKIN2Q8WXE0 1202 aa10.1□□□□□ -0.79
SCFD1-220ENST00000556486 GATAD2BQ8WXI9 593 aa10.1□□□□□ -0.79
SCFD1-220ENST00000556486 NAT6Q93015 286 aa10.1□□□□□ -0.79
SCFD1-220ENST00000556486 CENPTQ96BT3 561 aa10.1□□□□□ -0.79
SCFD1-220ENST00000556486 PSMG3-AS1Q96PY0 264 aa10.1□□□□□ -0.79
SCFD1-220ENST00000556486 FERD3LQ96RJ6 166 aa10.1□□□□□ -0.79
SCFD1-220ENST00000556486 SLC13A1Q9BZW2 595 aa10.1□□□□□ -0.79
SCFD1-220ENST00000556486 GANQ9H2C0 597 aa10.1□□□□□ -0.79
SCFD1-220ENST00000556486 CLSTN2Q9H4D0 955 aa10.1□□□□□ -0.79
SCFD1-220ENST00000556486 NDFIP2Q9NV92 336 aa10.1□□□□□ -0.79
SCFD1-220ENST00000556486 ACTR10Q9NZ32 417 aa10.1□□□□□ -0.79
SCFD1-220ENST00000556486 SEPT10Q9P0V9 454 aa10.1□□□□□ -0.79
SCFD1-220ENST00000556486 DKK3Q9UBP4 350 aa10.1□□□□□ -0.79
SCFD1-220ENST00000556486 GPN3Q9UHW5 284 aaPredicted RBP10.1□□□□□ -0.79
SCFD1-220ENST00000556486 MFHAS1Q9Y4C4 1052 aa10.1□□□□□ -0.79
SCFD1-220ENST00000556486 PCDHGC4Q9Y5F7 938 aa10.1□□□□□ -0.79
SCFD1-220ENST00000556486 LRRK1Q38SD2 2015 aa10.1□□□□□ -0.79
SCFD1-220ENST00000556486 C9orf172C9J069 976 aa10.09□□□□□ -0.79
SCFD1-220ENST00000556486 LMO7DNF2Z398 122 aa10.09□□□□□ -0.79
SCFD1-220ENST00000556486 FAM72CH0Y354 149 aa10.09□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms