RNA–Protein interactions for RNA: ENST00000553340.1

SYNE3-202, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 1 (best) BASIC

Gene SYNE3, Length 2,615 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-202ENST00000553340 ANKRD13AQ8IZ07 590 aa17.57■□□□□ 0.4
SYNE3-202ENST00000553340 ADGRG5Q8IZF4 528 aa17.57■□□□□ 0.4
SYNE3-202ENST00000553340 ARRDC4Q8NCT1 418 aa17.57■□□□□ 0.4
SYNE3-202ENST00000553340 TRPV3Q8NET8 790 aa17.57■□□□□ 0.4
SYNE3-202ENST00000553340 BORCS5Q969J3 196 aa17.57■□□□□ 0.4
SYNE3-202ENST00000553340 VPS50Q96JG6 964 aa17.57■□□□□ 0.4
SYNE3-202ENST00000553340 COG8Q96MW5 612 aa17.57■□□□□ 0.4
SYNE3-202ENST00000553340 DOK1Q99704 481 aa17.57■□□□□ 0.4
SYNE3-202ENST00000553340 SLC39A8Q9C0K1 460 aa17.57■□□□□ 0.4
SYNE3-202ENST00000553340 PAIP1Q9H074 479 aaKnown RBP17.57■□□□□ 0.4
SYNE3-202ENST00000553340 MUC3BQ9H195 1237 aa17.57■□□□□ 0.4
SYNE3-202ENST00000553340 SPON1Q9HCB6 807 aa17.57■□□□□ 0.4
SYNE3-202ENST00000553340 CDKN2AIPQ9NXV6 580 aaPredicted RBP17.57■□□□□ 0.4
SYNE3-202ENST00000553340 IPPQ9Y573 584 aa17.57■□□□□ 0.4
SYNE3-202ENST00000553340 FADS3Q9Y5Q0 445 aa17.57■□□□□ 0.4
SYNE3-202ENST00000553340 DNAJC15Q9Y5T4 150 aa17.57■□□□□ 0.4
SYNE3-202ENST00000553340 GPIP06744 558 aa17.56■□□□□ 0.4
SYNE3-202ENST00000553340 CAPN3P20807 821 aa17.56■□□□□ 0.4
SYNE3-202ENST00000553340 ETFBP38117 255 aa17.56■□□□□ 0.4
SYNE3-202ENST00000553340 SLC26A3P40879 764 aa17.56■□□□□ 0.4
SYNE3-202ENST00000553340 MAGEA8P43361 318 aa17.56■□□□□ 0.4
SYNE3-202ENST00000553340 HERVK_113P63132 956 aa17.56■□□□□ 0.4
SYNE3-202ENST00000553340 RAB39AQ14964 217 aa17.56■□□□□ 0.4
SYNE3-202ENST00000553340 PCSK7Q16549 785 aa17.56■□□□□ 0.4
SYNE3-202ENST00000553340 GEN1Q17RS7 908 aa17.56■□□□□ 0.4
SYNE3-202ENST00000553340 ZNF829Q3KNS6 432 aaPredicted RBP17.56■□□□□ 0.4
SYNE3-202ENST00000553340 GPR158Q5T848 1215 aa17.56■□□□□ 0.4
SYNE3-202ENST00000553340 TIGD7Q6NT04 549 aaPredicted RBP17.56■□□□□ 0.4
SYNE3-202ENST00000553340 ISCA2Q86U28 154 aa17.56■□□□□ 0.4
SYNE3-202ENST00000553340 ZNF354CQ86Y25 554 aa17.56■□□□□ 0.4
SYNE3-202ENST00000553340 HDAC10Q969S8 669 aa17.56■□□□□ 0.4
SYNE3-202ENST00000553340 FBXL20Q96IG2 436 aa17.56■□□□□ 0.4
SYNE3-202ENST00000553340 SENP8Q96LD8 212 aa17.56■□□□□ 0.4
SYNE3-202ENST00000553340 ASB2Q96Q27 587 aa17.56■□□□□ 0.4
SYNE3-202ENST00000553340 ERVK-6Q9BXR3 956 aa17.56■□□□□ 0.4
SYNE3-202ENST00000553340 POLR1BQ9H9Y6 1135 aa17.56■□□□□ 0.4
SYNE3-202ENST00000553340 CMTM6Q9NX76 183 aa17.56■□□□□ 0.4
SYNE3-202ENST00000553340 NEU3Q9UQ49 428 aa17.56■□□□□ 0.4
SYNE3-202ENST00000553340 ZNF711Q9Y462 761 aa17.56■□□□□ 0.4
SYNE3-202ENST00000553340 PTCH2Q9Y6C5 1203 aa17.56■□□□□ 0.4
SYNE3-202ENST00000553340 HHLA1C9JL84 531 aa17.56■□□□□ 0.4
SYNE3-202ENST00000553340 FXYD1O00168 92 aa17.56■□□□□ 0.4
SYNE3-202ENST00000553340 ARPC2O15144 300 aa17.56■□□□□ 0.4
SYNE3-202ENST00000553340 SNAP91O60641 907 aa17.56■□□□□ 0.4
SYNE3-202ENST00000553340 ATP6V1G1O75348 118 aa17.56■□□□□ 0.4
SYNE3-202ENST00000553340 CLIC3O95833 236 aa17.56■□□□□ 0.4
SYNE3-202ENST00000553340 SLC6A2P23975 617 aa17.56■□□□□ 0.4
SYNE3-202ENST00000553340 OXTRP30559 389 aa17.56■□□□□ 0.4
SYNE3-202ENST00000553340 KCNC1P48547 511 aa17.56■□□□□ 0.4
SYNE3-202ENST00000553340 LHX1P48742 406 aa17.56■□□□□ 0.4
SYNE3-202ENST00000553340 CDH13P55290 713 aa17.56■□□□□ 0.4
SYNE3-202ENST00000553340 NAA20P61599 178 aa17.56■□□□□ 0.4
SYNE3-202ENST00000553340 CAPRIN1Q14444 709 aaKnown RBP17.56■□□□□ 0.4
SYNE3-202ENST00000553340 DHRSXQ8N5I4 330 aa17.56■□□□□ 0.4
SYNE3-202ENST00000553340 TMEM40Q8WWA1 233 aa17.56■□□□□ 0.4
SYNE3-202ENST00000553340 CATSPERBQ9H7T0 1116 aa17.56■□□□□ 0.4
SYNE3-202ENST00000553340 SMIM35A0A1B0GVV1 85 aa17.55■□□□□ 0.4
SYNE3-202ENST00000553340 TTC24A2A3L6 582 aaPredicted RBP17.55■□□□□ 0.4
SYNE3-202ENST00000553340 ACOX3O15254 700 aa17.55■□□□□ 0.4
SYNE3-202ENST00000553340 IGFBP6P24592 240 aaPredicted RBP17.55■□□□□ 0.4
SYNE3-202ENST00000553340 CAPGP40121 348 aa17.55■□□□□ 0.4
SYNE3-202ENST00000553340 WNT3AP56704 352 aa17.55■□□□□ 0.4
SYNE3-202ENST00000553340 SH3BP2P78314 561 aa17.55■□□□□ 0.4
SYNE3-202ENST00000553340 NFKB2Q00653 900 aa17.55■□□□□ 0.4
SYNE3-202ENST00000553340 CYP51A1Q16850 503 aa17.55■□□□□ 0.4
SYNE3-202ENST00000553340 ANKDD1AQ495B1 522 aa17.55■□□□□ 0.4
SYNE3-202ENST00000553340 SPATS1Q496A3 300 aa17.55■□□□□ 0.4
SYNE3-202ENST00000553340 DQX1Q8TE96 717 aaKnown RBP17.55■□□□□ 0.4
SYNE3-202ENST00000553340 LRRC58Q96CX6 371 aa17.55■□□□□ 0.4
SYNE3-202ENST00000553340 SMARCD1Q96GM5 515 aa17.55■□□□□ 0.4
SYNE3-202ENST00000553340 SMPD3Q9NY59 655 aaPredicted RBP17.55■□□□□ 0.4
SYNE3-202ENST00000553340 BPTFQ12830 3046 aa17.55■□□□□ 0.4
SYNE3-202ENST00000553340 EI24O14681 340 aa17.55■□□□□ 0.4
SYNE3-202ENST00000553340 FGF10O15520 208 aaPredicted RBP17.55■□□□□ 0.4
SYNE3-202ENST00000553340 FOXD2O60548 495 aaPredicted RBP17.55■□□□□ 0.4
SYNE3-202ENST00000553340 GFAPP14136 432 aa17.55■□□□□ 0.4
SYNE3-202ENST00000553340 CD97P48960 835 aa17.55■□□□□ 0.4
SYNE3-202ENST00000553340 SNX17Q15036 470 aa17.55■□□□□ 0.4
SYNE3-202ENST00000553340 RPS6KA2Q15349 733 aa17.55■□□□□ 0.4
SYNE3-202ENST00000553340 SLC44A4Q53GD3 710 aa17.55■□□□□ 0.4
SYNE3-202ENST00000553340 NOMO2Q5JPE7 1267 aa17.55■□□□□ 0.4
SYNE3-202ENST00000553340 CILP2Q8IUL8 1156 aa17.55■□□□□ 0.4
SYNE3-202ENST00000553340 OR6J1Q8NGC5 347 aa17.55■□□□□ 0.4
SYNE3-202ENST00000553340 KCNH4Q9UQ05 1017 aa17.55■□□□□ 0.4
SYNE3-202ENST00000553340 A0A1W2PPW3 197 aa17.54■□□□□ 0.4
SYNE3-202ENST00000553340 DYTNA2CJ06 578 aa17.54■□□□□ 0.4
SYNE3-202ENST00000553340 TMX2-CTNND1H3BSU7 103 aa17.54■□□□□ 0.4
SYNE3-202ENST00000553340 FGF4P08620 206 aa17.54■□□□□ 0.4
SYNE3-202ENST00000553340 HOXD8P13378 290 aaPredicted RBP17.54■□□□□ 0.4
SYNE3-202ENST00000553340 FOXM1Q08050 763 aa17.54■□□□□ 0.4
SYNE3-202ENST00000553340 TMEM207Q6UWW9 146 aa17.54■□□□□ 0.4
SYNE3-202ENST00000553340 FASTKD5Q7L8L6 764 aaKnown RBP17.54■□□□□ 0.4
SYNE3-202ENST00000553340 GALNT7Q86SF2 657 aa17.54■□□□□ 0.4
SYNE3-202ENST00000553340 DDIASQ8IXT1 998 aa17.54■□□□□ 0.4
SYNE3-202ENST00000553340 OFCC1Q8IZS5 231 aa17.54■□□□□ 0.4
SYNE3-202ENST00000553340 TMEM86AQ8N2M4 240 aa17.54■□□□□ 0.4
SYNE3-202ENST00000553340 PPP1R13LQ8WUF5 828 aa17.54■□□□□ 0.4
SYNE3-202ENST00000553340 TWIST2Q8WVJ9 160 aa17.54■□□□□ 0.4
SYNE3-202ENST00000553340 COX4I2Q96KJ9 171 aa17.54■□□□□ 0.4
SYNE3-202ENST00000553340 KATNBL1Q9H079 304 aa17.54■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms