RNA–Protein interactions for RNA: ENST00000552828.5

CKAP4-202, Transcript of cytoskeleton associated protein 4, humanhuman

TSL 3

Gene CKAP4, Length 831 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKAP4-202ENST00000552828 AFMIDQ63HM1 303 aa11.89□□□□□ -0.51
CKAP4-202ENST00000552828 SCYL2Q6P3W7 929 aa11.89□□□□□ -0.51
CKAP4-202ENST00000552828 USP53Q70EK8 1073 aa11.89□□□□□ -0.51
CKAP4-202ENST00000552828 SPRED1Q7Z699 444 aa11.89□□□□□ -0.51
CKAP4-202ENST00000552828 SRLQ86TD4 932 aa11.89□□□□□ -0.51
CKAP4-202ENST00000552828 DTX1Q86Y01 620 aa11.89□□□□□ -0.51
CKAP4-202ENST00000552828 JAMLQ86YT9 394 aa11.89□□□□□ -0.51
CKAP4-202ENST00000552828 SLITRK4Q8IW52 837 aa11.89□□□□□ -0.51
CKAP4-202ENST00000552828 OR56A4Q8NGH8 313 aa11.89□□□□□ -0.51
CKAP4-202ENST00000552828 FNIP1Q8TF40 1166 aa11.89□□□□□ -0.51
CKAP4-202ENST00000552828 SPOCK2Q92563 424 aa11.89□□□□□ -0.51
CKAP4-202ENST00000552828 PANX2Q96RD6 677 aa11.89□□□□□ -0.51
CKAP4-202ENST00000552828 THAP2Q9H0W7 228 aa11.89□□□□□ -0.51
CKAP4-202ENST00000552828 ATP13A3Q9H7F0 1226 aa11.89□□□□□ -0.51
CKAP4-202ENST00000552828 FGF22Q9HCT0 170 aa11.89□□□□□ -0.51
CKAP4-202ENST00000552828 STARD5Q9NSY2 213 aa11.89□□□□□ -0.51
CKAP4-202ENST00000552828 PISDQ9UG56 409 aa11.89□□□□□ -0.51
CKAP4-202ENST00000552828 NENFQ9UMX5 172 aa11.89□□□□□ -0.51
CKAP4-202ENST00000552828 FLNCQ14315 2725 aa11.89□□□□□ -0.51
CKAP4-202ENST00000552828 EIF3CLB5ME19 914 aaKnown RBP11.88□□□□□ -0.51
CKAP4-202ENST00000552828 IQCJ-SCHIP1C9J366 451 aaPredicted RBP11.88□□□□□ -0.51
CKAP4-202ENST00000552828 CACNB4O00305 520 aaPredicted RBP11.88□□□□□ -0.51
CKAP4-202ENST00000552828 RNF8O76064 485 aa11.88□□□□□ -0.51
CKAP4-202ENST00000552828 RECQL5O94762 991 aaPredicted RBP11.88□□□□□ -0.51
CKAP4-202ENST00000552828 CYP1A2P05177 515 aa11.88□□□□□ -0.51
CKAP4-202ENST00000552828 H2AFZP0C0S5 128 aa11.88□□□□□ -0.51
CKAP4-202ENST00000552828 GM2AP17900 193 aa11.88□□□□□ -0.51
CKAP4-202ENST00000552828 ITGB6P18564 788 aa11.88□□□□□ -0.51
CKAP4-202ENST00000552828 KELP23276 732 aa11.88□□□□□ -0.51
CKAP4-202ENST00000552828 CD82P27701 267 aa11.88□□□□□ -0.51
CKAP4-202ENST00000552828 SERPINA4P29622 427 aa11.88□□□□□ -0.51
CKAP4-202ENST00000552828 RGRP47804 291 aa11.88□□□□□ -0.51
CKAP4-202ENST00000552828 CSRP3P50461 194 aa11.88□□□□□ -0.51
CKAP4-202ENST00000552828 POLR2LP62875 67 aaKnown RBP11.88□□□□□ -0.51
CKAP4-202ENST00000552828 B4GALNT1Q00973 533 aa11.88□□□□□ -0.51
CKAP4-202ENST00000552828 OGDHQ02218 1023 aa11.88□□□□□ -0.51
CKAP4-202ENST00000552828 TCEA2Q15560 299 aa11.88□□□□□ -0.51
CKAP4-202ENST00000552828 C14orf28Q4W4Y0 310 aa11.88□□□□□ -0.51
CKAP4-202ENST00000552828 CFAP58Q5T655 872 aa11.88□□□□□ -0.51
CKAP4-202ENST00000552828 LIPIQ6XZB0 460 aa11.88□□□□□ -0.51
CKAP4-202ENST00000552828 H2AFVQ71UI9 128 aa11.88□□□□□ -0.51
CKAP4-202ENST00000552828 TAF8Q7Z7C8 310 aa11.88□□□□□ -0.51
CKAP4-202ENST00000552828 C17orf82Q86X59 251 aaPredicted RBP11.88□□□□□ -0.51
CKAP4-202ENST00000552828 Q8N9G6 341 aaPredicted RBP11.88□□□□□ -0.51
CKAP4-202ENST00000552828 TSEN2Q8NCE0 465 aaKnown RBP11.88□□□□□ -0.51
CKAP4-202ENST00000552828 FAM46DQ8NEK8 389 aa11.88□□□□□ -0.51
CKAP4-202ENST00000552828 CTNNBL1Q8WYA6 563 aaPredicted RBP11.88□□□□□ -0.51
CKAP4-202ENST00000552828 EIF3CQ99613 913 aaKnown RBP11.88□□□□□ -0.51
CKAP4-202ENST00000552828 CMKLR1Q99788 373 aa11.88□□□□□ -0.51
CKAP4-202ENST00000552828 SEMA3CQ99985 751 aa11.88□□□□□ -0.51
CKAP4-202ENST00000552828 NUP85Q9BW27 656 aa11.88□□□□□ -0.51
CKAP4-202ENST00000552828 SLC39A8Q9C0K1 460 aa11.88□□□□□ -0.51
CKAP4-202ENST00000552828 TMEM168Q9H0V1 697 aa11.88□□□□□ -0.51
CKAP4-202ENST00000552828 SPTLC3Q9NUV7 552 aa11.88□□□□□ -0.51
CKAP4-202ENST00000552828 SEPT10Q9P0V9 454 aa11.88□□□□□ -0.51
CKAP4-202ENST00000552828 LRIT1Q9P2V4 623 aa11.88□□□□□ -0.51
CKAP4-202ENST00000552828 IMPACTQ9P2X3 320 aa11.88□□□□□ -0.51
CKAP4-202ENST00000552828 RNF215Q9Y6U7 377 aa11.88□□□□□ -0.51
CKAP4-202ENST00000552828 PRAMEF33A0A0G2JMD5 474 aa11.87□□□□□ -0.51
CKAP4-202ENST00000552828 GOLGA6L6A8MZA4 724 aa11.87□□□□□ -0.51
CKAP4-202ENST00000552828 C9orf172C9J069 976 aa11.87□□□□□ -0.51
CKAP4-202ENST00000552828 TRAFD1O14545 582 aaPredicted RBP11.87□□□□□ -0.51
CKAP4-202ENST00000552828 PRAMEF10O60809 474 aa11.87□□□□□ -0.51
CKAP4-202ENST00000552828 PRKCGP05129 697 aa11.87□□□□□ -0.51
CKAP4-202ENST00000552828 KRT10P13645 584 aa11.87□□□□□ -0.51
CKAP4-202ENST00000552828 ITIH1P19827 911 aa11.87□□□□□ -0.51
CKAP4-202ENST00000552828 PAPOLAP51003 745 aaKnown RBP11.87□□□□□ -0.51
CKAP4-202ENST00000552828 TPI1P60174 286 aa11.87□□□□□ -0.51
CKAP4-202ENST00000552828 SRSF6Q13247 344 aaKnown RBP11.87□□□□□ -0.51
CKAP4-202ENST00000552828 RFTN1Q14699 578 aaPredicted RBP11.87□□□□□ -0.51
CKAP4-202ENST00000552828 NR1D2Q14995 579 aa11.87□□□□□ -0.51
CKAP4-202ENST00000552828 CLPPQ16740 277 aaPredicted RBP11.87□□□□□ -0.51
CKAP4-202ENST00000552828 PNCKQ6P2M8 343 aa11.87□□□□□ -0.51
CKAP4-202ENST00000552828 DPPA4Q7L190 304 aa11.87□□□□□ -0.51
CKAP4-202ENST00000552828 TMPRSS9Q7Z410 1059 aa11.87□□□□□ -0.51
CKAP4-202ENST00000552828 ZNF438Q7Z4V0 828 aa11.87□□□□□ -0.51
CKAP4-202ENST00000552828 TMTC1Q8IUR5 882 aa11.87□□□□□ -0.51
CKAP4-202ENST00000552828 SFTPA2Q8IWL1 248 aa11.87□□□□□ -0.51
CKAP4-202ENST00000552828 CCDC170Q8IYT3 715 aa11.87□□□□□ -0.51
CKAP4-202ENST00000552828 CBARPQ8N350 705 aaPredicted RBP11.87□□□□□ -0.51
CKAP4-202ENST00000552828 GPBAR1Q8TDU6 330 aa11.87□□□□□ -0.51
CKAP4-202ENST00000552828 EXTL1Q92935 676 aa11.87□□□□□ -0.51
CKAP4-202ENST00000552828 CELF6Q96J87 481 aaKnown RBP11.87□□□□□ -0.51
CKAP4-202ENST00000552828 LGR4Q9BXB1 951 aa11.87□□□□□ -0.51
CKAP4-202ENST00000552828 TRIM7Q9C029 511 aa11.87□□□□□ -0.51
CKAP4-202ENST00000552828 MRPL40Q9NQ50 206 aaKnown RBP11.87□□□□□ -0.51
CKAP4-202ENST00000552828 FOXJ2Q9P0K8 574 aa11.87□□□□□ -0.51
CKAP4-202ENST00000552828 PCDHGA4Q9Y5G9 962 aa11.87□□□□□ -0.51
CKAP4-202ENST00000552828 ARHGAP42A6NI28 874 aa11.86□□□□□ -0.51
CKAP4-202ENST00000552828 CYSRT1A8MQ03 144 aa11.86□□□□□ -0.51
CKAP4-202ENST00000552828 PYCARD-AS1I3L0S3 204 aa11.86□□□□□ -0.51
CKAP4-202ENST00000552828 MYO1FO00160 1098 aa11.86□□□□□ -0.51
CKAP4-202ENST00000552828 PDE2AO00408 941 aaPredicted RBP11.86□□□□□ -0.51
CKAP4-202ENST00000552828 TERTO14746 1132 aaKnown RBP11.86□□□□□ -0.51
CKAP4-202ENST00000552828 B4GAT1O43505 415 aa11.86□□□□□ -0.51
CKAP4-202ENST00000552828 PALMO75781 387 aa11.86□□□□□ -0.51
CKAP4-202ENST00000552828 CPNE6O95741 557 aa11.86□□□□□ -0.51
CKAP4-202ENST00000552828 TMEM253P0C7T8 217 aa11.86□□□□□ -0.51
CKAP4-202ENST00000552828 ELFN1P0C7U0 828 aa11.86□□□□□ -0.51
CKAP4-202ENST00000552828 SFTPCP11686 197 aa11.86□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 54 ms