RNA–Protein interactions for RNA: ENST00000544967.5

USP28-213, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 3,498 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-213ENST00000544967 PCDHGC3Q9UN70 934 aa5.28□□□□□ -1.56
USP28-213ENST00000544967 DERAQ9Y315 318 aa5.28□□□□□ -1.56
USP28-213ENST00000544967 NUP210Q8TEM1 1887 aaPredicted RBP5.28□□□□□ -1.56
USP28-213ENST00000544967 FAM170AA1A519 330 aa5.28□□□□□ -1.56
USP28-213ENST00000544967 SERTM1A2A2V5 107 aa5.28□□□□□ -1.56
USP28-213ENST00000544967 TMEM191CA6NGB0 347 aa5.28□□□□□ -1.56
USP28-213ENST00000544967 DDX39AO00148 427 aaKnown RBP5.28□□□□□ -1.56
USP28-213ENST00000544967 TRIM24O15164 1050 aa5.28□□□□□ -1.56
USP28-213ENST00000544967 SUPT7LO94864 414 aa5.28□□□□□ -1.56
USP28-213ENST00000544967 KRT7P08729 469 aa5.28□□□□□ -1.56
USP28-213ENST00000544967 TMEM191BP0C7N4 346 aa5.28□□□□□ -1.56
USP28-213ENST00000544967 SFTPCP11686 197 aa5.28□□□□□ -1.56
USP28-213ENST00000544967 PCNAP12004 261 aa5.28□□□□□ -1.56
USP28-213ENST00000544967 KRT3P12035 628 aa5.28□□□□□ -1.56
USP28-213ENST00000544967 MX2P20592 715 aa5.28□□□□□ -1.56
USP28-213ENST00000544967 GSTM2P28161 218 aa5.28□□□□□ -1.56
USP28-213ENST00000544967 EPHA3P29320 983 aa5.28□□□□□ -1.56
USP28-213ENST00000544967 RPL22P35268 128 aaKnown RBP5.28□□□□□ -1.56
USP28-213ENST00000544967 SERPINB5P36952 375 aa5.28□□□□□ -1.56
USP28-213ENST00000544967 MTHFRP42898 656 aa5.28□□□□□ -1.56
USP28-213ENST00000544967 NPTX2P47972 431 aa5.28□□□□□ -1.56
USP28-213ENST00000544967 PRIM2P49643 509 aa5.28□□□□□ -1.56
USP28-213ENST00000544967 MRPS22P82650 360 aaKnown RBP5.28□□□□□ -1.56
USP28-213ENST00000544967 PRKCQQ04759 706 aa5.28□□□□□ -1.56
USP28-213ENST00000544967 GALNT1Q10472 559 aaPredicted RBP5.28□□□□□ -1.56
USP28-213ENST00000544967 GK3PQ14409 553 aa5.28□□□□□ -1.56
USP28-213ENST00000544967 DCAF4L1Q3SXM0 396 aa5.28□□□□□ -1.56
USP28-213ENST00000544967 MSS51Q4VC12 460 aa5.28□□□□□ -1.56
USP28-213ENST00000544967 RBM48Q5RL73 367 aaKnown RBP5.28□□□□□ -1.56
USP28-213ENST00000544967 GTF2IRD2BQ6EKJ0 949 aa5.28□□□□□ -1.56
USP28-213ENST00000544967 TTC33Q6PID6 262 aaPredicted RBP5.28□□□□□ -1.56
USP28-213ENST00000544967 POMZP3Q6PJE2 187 aa5.28□□□□□ -1.56
USP28-213ENST00000544967 AKAP14Q86UN6 197 aa5.28□□□□□ -1.56
USP28-213ENST00000544967 GTF2IRD2Q86UP8 949 aa5.28□□□□□ -1.56
USP28-213ENST00000544967 CPNE8Q86YQ8 564 aa5.28□□□□□ -1.56
USP28-213ENST00000544967 TDHQ8IZJ6 230 aa5.28□□□□□ -1.56
USP28-213ENST00000544967 MYCT1Q8N699 235 aa5.28□□□□□ -1.56
USP28-213ENST00000544967 EFCAB3Q8N7B9 438 aa5.28□□□□□ -1.56
USP28-213ENST00000544967 PLPP7Q8NBV4 271 aa5.28□□□□□ -1.56
USP28-213ENST00000544967 FBXL13Q8NEE6 735 aa5.28□□□□□ -1.56
USP28-213ENST00000544967 BHLHE22Q8NFJ8 381 aaPredicted RBP5.28□□□□□ -1.56
USP28-213ENST00000544967 IPMKQ8NFU5 416 aa5.28□□□□□ -1.56
USP28-213ENST00000544967 SLC2A14Q8TDB8 520 aa5.28□□□□□ -1.56
USP28-213ENST00000544967 HCAR2Q8TDS4 363 aa5.28□□□□□ -1.56
USP28-213ENST00000544967 DNAJB3Q8WWF6 145 aa5.28□□□□□ -1.56
USP28-213ENST00000544967 BADQ92934 168 aa5.28□□□□□ -1.56
USP28-213ENST00000544967 MFSD14AQ96MC6 490 aa5.28□□□□□ -1.56
USP28-213ENST00000544967 SAMD11Q96NU1 681 aa5.28□□□□□ -1.56
USP28-213ENST00000544967 BARD1Q99728 777 aaKnown RBP5.28□□□□□ -1.56
USP28-213ENST00000544967 RHOBTB2Q9BYZ6 727 aa5.28□□□□□ -1.56
USP28-213ENST00000544967 POLR3FQ9H1D9 316 aaPredicted RBP5.28□□□□□ -1.56
USP28-213ENST00000544967 SLA2Q9H6Q3 261 aa5.28□□□□□ -1.56
USP28-213ENST00000544967 MINDY3Q9H8M7 445 aa5.28□□□□□ -1.56
USP28-213ENST00000544967 CDHR5Q9HBB8 845 aa5.28□□□□□ -1.56
USP28-213ENST00000544967 POPDC2Q9HBU9 364 aa5.28□□□□□ -1.56
USP28-213ENST00000544967 ACP6Q9NPH0 428 aa5.28□□□□□ -1.56
USP28-213ENST00000544967 NXF1Q9UBU9 619 aaKnown RBP5.28□□□□□ -1.56
USP28-213ENST00000544967 PCDHGA11Q9Y5H2 935 aa5.28□□□□□ -1.56
USP28-213ENST00000544967 TEX51A0A1B0GUA7 166 aa5.27□□□□□ -1.57
USP28-213ENST00000544967 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP5.27□□□□□ -1.57
USP28-213ENST00000544967 A0A1W2PPW3 197 aa5.27□□□□□ -1.57
USP28-213ENST00000544967 TMEM150BA6NC51 233 aa5.27□□□□□ -1.57
USP28-213ENST00000544967 C3orf70A6NLC5 250 aaPredicted RBP5.27□□□□□ -1.57
USP28-213ENST00000544967 APOC4-APOC2K7ER74 178 aa5.27□□□□□ -1.57
USP28-213ENST00000544967 SGK1O00141 431 aa5.27□□□□□ -1.57
USP28-213ENST00000544967 CHMP2AO43633 222 aa5.27□□□□□ -1.57
USP28-213ENST00000544967 PQBP1O60828 265 aaKnown RBP5.27□□□□□ -1.57
USP28-213ENST00000544967 TMEM63AO94886 807 aa5.27□□□□□ -1.57
USP28-213ENST00000544967 PTTG1O95997 202 aa5.27□□□□□ -1.57
USP28-213ENST00000544967 APOC2P02655 101 aa5.27□□□□□ -1.57
USP28-213ENST00000544967 KRT1P04264 644 aa5.27□□□□□ -1.57
USP28-213ENST00000544967 XRCC1P18887 633 aaPredicted RBP5.27□□□□□ -1.57
USP28-213ENST00000544967 TPSB2P20231 275 aa5.27□□□□□ -1.57
USP28-213ENST00000544967 MAP4P27816 1152 aaKnown RBP5.27□□□□□ -1.57
USP28-213ENST00000544967 CDH5P33151 784 aaPredicted RBP5.27□□□□□ -1.57
USP28-213ENST00000544967 HPCAL1P37235 193 aa5.27□□□□□ -1.57
USP28-213ENST00000544967 ELK3P41970 407 aa5.27□□□□□ -1.57
USP28-213ENST00000544967 SERPINB10P48595 397 aa5.27□□□□□ -1.57
USP28-213ENST00000544967 LIMK1P53667 647 aa5.27□□□□□ -1.57
USP28-213ENST00000544967 NOMO3P69849 1222 aa5.27□□□□□ -1.57
USP28-213ENST00000544967 BASP1P80723 227 aaKnown RBP5.27□□□□□ -1.57
USP28-213ENST00000544967 DSC1Q08554 894 aa5.27□□□□□ -1.57
USP28-213ENST00000544967 ILF2Q12905 390 aaKnown RBP5.27□□□□□ -1.57
USP28-213ENST00000544967 TOP3AQ13472 1001 aaPredicted RBP5.27□□□□□ -1.57
USP28-213ENST00000544967 SLC12A1Q13621 1099 aa5.27□□□□□ -1.57
USP28-213ENST00000544967 TPSAB1Q15661 275 aa5.27□□□□□ -1.57
USP28-213ENST00000544967 DLG2Q15700 870 aa5.27□□□□□ -1.57
USP28-213ENST00000544967 ATP6AP1Q15904 470 aa5.27□□□□□ -1.57
USP28-213ENST00000544967 ZNF181Q2M3W8 571 aa5.27□□□□□ -1.57
USP28-213ENST00000544967 WSCD2Q2TBF2 565 aa5.27□□□□□ -1.57
USP28-213ENST00000544967 TIGD2Q4W5G0 525 aa5.27□□□□□ -1.57
USP28-213ENST00000544967 FAM45BPQ6NSW5 357 aa5.27□□□□□ -1.57
USP28-213ENST00000544967 C8orf82Q6P1X6 216 aaPredicted RBP5.27□□□□□ -1.57
USP28-213ENST00000544967 SLC39A4Q6P5W5 647 aa5.27□□□□□ -1.57
USP28-213ENST00000544967 CTAGE3PQ8IX95 158 aa5.27□□□□□ -1.57
USP28-213ENST00000544967 GLIS1Q8NBF1 620 aa5.27□□□□□ -1.57
USP28-213ENST00000544967 PDZD8Q8NEN9 1154 aa5.27□□□□□ -1.57
USP28-213ENST00000544967 PJA1Q8NG27 643 aa5.27□□□□□ -1.57
USP28-213ENST00000544967 FAM45AQ8TCE6 357 aa5.27□□□□□ -1.57
USP28-213ENST00000544967 TP53INP1Q96A56 240 aa5.27□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms