RNA–Protein interactions for RNA: ENST00000543710.5

VPS13D-211, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 5,676 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-211ENST00000543710 LGALS2P05162 132 aa7.83□□□□□ -1.16
VPS13D-211ENST00000543710 SERPIND1P05546 499 aa7.83□□□□□ -1.16
VPS13D-211ENST00000543710 GPC1P35052 558 aa7.83□□□□□ -1.16
VPS13D-211ENST00000543710 TM4SF4P48230 202 aa7.83□□□□□ -1.16
VPS13D-211ENST00000543710 TRAF2Q12933 501 aa7.83□□□□□ -1.16
VPS13D-211ENST00000543710 IL18R1Q13478 541 aa7.83□□□□□ -1.16
VPS13D-211ENST00000543710 CBWD6Q4V339 395 aa7.83□□□□□ -1.16
VPS13D-211ENST00000543710 EPC2Q52LR7 807 aa7.83□□□□□ -1.16
VPS13D-211ENST00000543710 CXXC5Q7LFL8 322 aaKnown RBP7.83□□□□□ -1.16
VPS13D-211ENST00000543710 CBWD2Q8IUF1 395 aa7.83□□□□□ -1.16
VPS13D-211ENST00000543710 OR8H2Q8N162 312 aa7.83□□□□□ -1.16
VPS13D-211ENST00000543710 BHLHE22Q8NFJ8 381 aaPredicted RBP7.83□□□□□ -1.16
VPS13D-211ENST00000543710 GPR152Q8TDT2 470 aa7.83□□□□□ -1.16
VPS13D-211ENST00000543710 MSANTD3Q96H12 275 aa7.83□□□□□ -1.16
VPS13D-211ENST00000543710 PDCD2LQ9BRP1 358 aa7.83□□□□□ -1.16
VPS13D-211ENST00000543710 MID1IP1Q9NPA3 183 aa7.83□□□□□ -1.16
VPS13D-211ENST00000543710 PADI4Q9UM07 663 aa7.83□□□□□ -1.16
VPS13D-211ENST00000543710 CICQ96RK0 1608 aaPredicted RBP7.83□□□□□ -1.16
VPS13D-211ENST00000543710 KPNA3O00505 521 aaPredicted RBP7.83□□□□□ -1.16
VPS13D-211ENST00000543710 AVILO75366 819 aa7.83□□□□□ -1.16
VPS13D-211ENST00000543710 LRPAP1P30533 357 aa7.83□□□□□ -1.16
VPS13D-211ENST00000543710 HOXC12P31275 282 aa7.83□□□□□ -1.16
VPS13D-211ENST00000543710 SDC2P34741 201 aa7.83□□□□□ -1.16
VPS13D-211ENST00000543710 SPIDRQ14159 915 aa7.83□□□□□ -1.16
VPS13D-211ENST00000543710 C6orf132Q5T0Z8 1188 aa7.83□□□□□ -1.16
VPS13D-211ENST00000543710 GJB7Q6PEY0 223 aa7.83□□□□□ -1.16
VPS13D-211ENST00000543710 USP53Q70EK8 1073 aa7.83□□□□□ -1.16
VPS13D-211ENST00000543710 CACTIN-AS1Q8N1I8 211 aa7.83□□□□□ -1.16
VPS13D-211ENST00000543710 METTL21AQ8WXB1 218 aa7.83□□□□□ -1.16
VPS13D-211ENST00000543710 ZNF606Q8WXB4 792 aa7.83□□□□□ -1.16
VPS13D-211ENST00000543710 SLCO2A1Q92959 643 aa7.83□□□□□ -1.16
VPS13D-211ENST00000543710 MCRS1Q96EZ8 462 aa7.83□□□□□ -1.16
VPS13D-211ENST00000543710 EBNA1BP2Q99848 306 aaKnown RBP7.83□□□□□ -1.16
VPS13D-211ENST00000543710 VPS45Q9NRW7 570 aa7.83□□□□□ -1.16
VPS13D-211ENST00000543710 UPB1Q9UBR1 384 aa7.83□□□□□ -1.16
VPS13D-211ENST00000543710 MARCOQ9UEW3 520 aaPredicted RBP7.83□□□□□ -1.16
VPS13D-211ENST00000543710 INVSQ9Y283 1065 aa7.83□□□□□ -1.16
VPS13D-211ENST00000543710 DDX3XO00571 662 aaKnown RBP eCLIP7.83□□□□□ -1.16
VPS13D-211ENST00000543710 CASKO14936 926 aa7.83□□□□□ -1.16
VPS13D-211ENST00000543710 MFN2O95140 757 aa7.83□□□□□ -1.16
VPS13D-211ENST00000543710 SCELO95171 688 aa7.83□□□□□ -1.16
VPS13D-211ENST00000543710 GJB6O95452 261 aa7.83□□□□□ -1.16
VPS13D-211ENST00000543710 SHMT1P34896 483 aa7.83□□□□□ -1.16
VPS13D-211ENST00000543710 CXCL12P48061 93 aa7.83□□□□□ -1.16
VPS13D-211ENST00000543710 SNRPD1P62314 119 aaKnown RBP7.83□□□□□ -1.16
VPS13D-211ENST00000543710 AUHQ13825 339 aaKnown RBP7.83□□□□□ -1.16
VPS13D-211ENST00000543710 CSHL1Q14406 222 aa7.83□□□□□ -1.16
VPS13D-211ENST00000543710 RUNDC3AQ59EK9 446 aa7.83□□□□□ -1.16
VPS13D-211ENST00000543710 DCLRE1AQ6PJP8 1040 aa7.83□□□□□ -1.16
VPS13D-211ENST00000543710 NANOGNBQ7Z5D8 188 aa7.83□□□□□ -1.16
VPS13D-211ENST00000543710 EPHX4Q8IUS5 362 aa7.83□□□□□ -1.16
VPS13D-211ENST00000543710 CENPIQ92674 756 aaPredicted RBP7.83□□□□□ -1.16
VPS13D-211ENST00000543710 HGH1Q9BTY7 390 aa7.83□□□□□ -1.16
VPS13D-211ENST00000543710 TARS2Q9BW92 718 aaKnown RBP7.83□□□□□ -1.16
VPS13D-211ENST00000543710 PCBD2Q9H0N5 130 aa7.83□□□□□ -1.16
VPS13D-211ENST00000543710 FTSJ1Q9UET6 329 aa7.83□□□□□ -1.16
VPS13D-211ENST00000543710 ASTN1O14525 1302 aa7.83□□□□□ -1.16
VPS13D-211ENST00000543710 A0A0G2JLL6 359 aaPredicted RBP7.83□□□□□ -1.16
VPS13D-211ENST00000543710 PDCD5O14737 125 aa7.83□□□□□ -1.16
VPS13D-211ENST00000543710 NPPAP01160 153 aa7.83□□□□□ -1.16
VPS13D-211ENST00000543710 PECAM1P16284 738 aaPredicted RBP7.83□□□□□ -1.16
VPS13D-211ENST00000543710 EN2P19622 333 aaPredicted RBP7.83□□□□□ -1.16
VPS13D-211ENST00000543710 MGAT1P26572 445 aa7.83□□□□□ -1.16
VPS13D-211ENST00000543710 ATP4BP51164 291 aa7.83□□□□□ -1.16
VPS13D-211ENST00000543710 TXNL4AP83876 142 aaKnown RBP7.83□□□□□ -1.16
VPS13D-211ENST00000543710 SMTNL2Q2TAL5 461 aa7.83□□□□□ -1.16
VPS13D-211ENST00000543710 FUT11Q495W5 492 aa7.83□□□□□ -1.16
VPS13D-211ENST00000543710 ARSJQ5FYB0 599 aaPredicted RBP7.83□□□□□ -1.16
VPS13D-211ENST00000543710 RBM48Q5RL73 367 aaKnown RBP7.83□□□□□ -1.16
VPS13D-211ENST00000543710 CELF3Q5SZQ8 465 aaKnown RBP7.83□□□□□ -1.16
VPS13D-211ENST00000543710 PRRT2Q7Z6L0 340 aaPredicted RBP7.83□□□□□ -1.16
VPS13D-211ENST00000543710 MPP5Q8N3R9 675 aa7.83□□□□□ -1.16
VPS13D-211ENST00000543710 LRRC71Q8N4P6 559 aa7.83□□□□□ -1.16
VPS13D-211ENST00000543710 NIPA2Q8N8Q9 360 aa7.83□□□□□ -1.16
VPS13D-211ENST00000543710 THRSPQ92748 146 aa7.83□□□□□ -1.16
VPS13D-211ENST00000543710 CERS2Q96G23 380 aa7.83□□□□□ -1.16
VPS13D-211ENST00000543710 SEMA3GQ9NS98 782 aa7.83□□□□□ -1.16
VPS13D-211ENST00000543710 FAM49BQ9NUQ9 324 aa7.83□□□□□ -1.16
VPS13D-211ENST00000543710 DNMT3LQ9UJW3 386 aa7.83□□□□□ -1.16
VPS13D-211ENST00000543710 SNCAIPQ9Y6H5 919 aa7.83□□□□□ -1.16
VPS13D-211ENST00000543710 SLC12A8A0AV02 714 aa7.83□□□□□ -1.16
VPS13D-211ENST00000543710 EOMESO95936 686 aa7.83□□□□□ -1.16
VPS13D-211ENST00000543710 JAM2P57087 298 aa7.83□□□□□ -1.16
VPS13D-211ENST00000543710 BCL2L1Q07817 233 aa7.83□□□□□ -1.16
VPS13D-211ENST00000543710 RGS1Q08116 209 aa7.83□□□□□ -1.16
VPS13D-211ENST00000543710 NR6A1Q15406 480 aa7.83□□□□□ -1.16
VPS13D-211ENST00000543710 VPS26BQ4G0F5 336 aa7.83□□□□□ -1.16
VPS13D-211ENST00000543710 TRIM40Q6P9F5 258 aa7.83□□□□□ -1.16
VPS13D-211ENST00000543710 RIPOR1Q6ZS17 1223 aa7.83□□□□□ -1.16
VPS13D-211ENST00000543710 FNDC5Q8NAU1 212 aa7.83□□□□□ -1.16
VPS13D-211ENST00000543710 ZSWIM2Q8NEG5 633 aa7.83□□□□□ -1.16
VPS13D-211ENST00000543710 ZNF347Q96SE7 839 aa7.83□□□□□ -1.16
VPS13D-211ENST00000543710 TMEM121Q9BTD3 319 aa7.83□□□□□ -1.16
VPS13D-211ENST00000543710 PRRG4Q9BZD6 226 aa7.83□□□□□ -1.16
VPS13D-211ENST00000543710 ZYG11BQ9C0D3 744 aa7.83□□□□□ -1.16
VPS13D-211ENST00000543710 DUS2Q9NX74 493 aaKnown RBP7.83□□□□□ -1.16
VPS13D-211ENST00000543710 CHORDC1Q9UHD1 332 aaPredicted RBP7.83□□□□□ -1.16
VPS13D-211ENST00000543710 ZNF214Q9UL59 606 aaPredicted RBP7.83□□□□□ -1.16
VPS13D-211ENST00000543710 NUP188Q5SRE5 1749 aa7.82□□□□□ -1.16
VPS13D-211ENST00000543710 FAM237BA0A1B0GVD1 139 aa7.82□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms