RNA–Protein interactions for RNA: ENST00000542460.5

LIG1-204, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 1,527 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-204ENST00000542460 SETMARQ53H47 684 aaPredicted RBP17.13■□□□□ 0.33
LIG1-204ENST00000542460 DENND2CQ68D51 928 aa17.13■□□□□ 0.33
LIG1-204ENST00000542460 HIBCHQ6NVY1 386 aaPredicted RBP17.13■□□□□ 0.33
LIG1-204ENST00000542460 GLT6D1Q7Z4J2 308 aa17.13■□□□□ 0.33
LIG1-204ENST00000542460 TMC3Q7Z5M5 1100 aa17.13■□□□□ 0.33
LIG1-204ENST00000542460 SLC41A1Q8IVJ1 513 aa17.13■□□□□ 0.33
LIG1-204ENST00000542460 HSPA12BQ96MM6 686 aa17.13■□□□□ 0.33
LIG1-204ENST00000542460 KCTD5Q9NXV2 234 aa17.13■□□□□ 0.33
LIG1-204ENST00000542460 C2orf81A6NN90 581 aa17.12■□□□□ 0.33
LIG1-204ENST00000542460 MEI4A8MW99 385 aa17.12■□□□□ 0.33
LIG1-204ENST00000542460 GOLGA8MH3BSY2 632 aa17.12■□□□□ 0.33
LIG1-204ENST00000542460 AURKAO14965 403 aa17.12■□□□□ 0.33
LIG1-204ENST00000542460 RECQL5O94762 991 aaPredicted RBP17.12■□□□□ 0.33
LIG1-204ENST00000542460 CRTAMO95727 393 aa17.12■□□□□ 0.33
LIG1-204ENST00000542460 PAK4O96013 591 aaPredicted RBP17.12■□□□□ 0.33
LIG1-204ENST00000542460 HMGCLP35914 325 aa17.12■□□□□ 0.33
LIG1-204ENST00000542460 STC1P52823 247 aa17.12■□□□□ 0.33
LIG1-204ENST00000542460 ITGA8P53708 1063 aa17.12■□□□□ 0.33
LIG1-204ENST00000542460 PDE1BQ01064 536 aa17.12■□□□□ 0.33
LIG1-204ENST00000542460 CREB5Q02930 508 aa17.12■□□□□ 0.33
LIG1-204ENST00000542460 TAF1AQ15573 450 aaPredicted RBP17.12■□□□□ 0.33
LIG1-204ENST00000542460 WDR45BQ5MNZ6 344 aa17.12■□□□□ 0.33
LIG1-204ENST00000542460 CERCAMQ5T4B2 595 aa17.12■□□□□ 0.33
LIG1-204ENST00000542460 PRR23BQ6ZRT6 265 aa17.12■□□□□ 0.33
LIG1-204ENST00000542460 ZNF534Q76KX8 674 aa17.12■□□□□ 0.33
LIG1-204ENST00000542460 HSD11B1LQ7Z5J1 315 aa17.12■□□□□ 0.33
LIG1-204ENST00000542460 CAND1Q86VP6 1230 aaKnown RBP17.12■□□□□ 0.33
LIG1-204ENST00000542460 TTC30BQ8N4P2 665 aa17.12■□□□□ 0.33
LIG1-204ENST00000542460 COQ10AQ96MF6 247 aa17.12■□□□□ 0.33
LIG1-204ENST00000542460 C1QTNF7Q9BXJ2 289 aa17.12■□□□□ 0.33
LIG1-204ENST00000542460 FRMD8Q9BZ67 464 aaPredicted RBP17.12■□□□□ 0.33
LIG1-204ENST00000542460 EPC1Q9H2F5 836 aa17.12■□□□□ 0.33
LIG1-204ENST00000542460 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP17.12■□□□□ 0.332e-6■■■■□ 22.1
LIG1-204ENST00000542460 BFARQ9NZS9 450 aa17.12■□□□□ 0.33
LIG1-204ENST00000542460 DMTF1Q9Y222 760 aa17.12■□□□□ 0.33
LIG1-204ENST00000542460 COQ6Q9Y2Z9 468 aa17.12■□□□□ 0.33
LIG1-204ENST00000542460 PLXND1Q9Y4D7 1925 aa17.12■□□□□ 0.33
LIG1-204ENST00000542460 A0A1W2PPC4 97 aa17.11■□□□□ 0.33
LIG1-204ENST00000542460 RGSL1A5PLK6 1076 aa17.11■□□□□ 0.33
LIG1-204ENST00000542460 WNT9AO14904 365 aa17.11■□□□□ 0.33
LIG1-204ENST00000542460 SLC31A1O15431 190 aa17.11■□□□□ 0.33
LIG1-204ENST00000542460 C1SP09871 688 aa17.11■□□□□ 0.33
LIG1-204ENST00000542460 CD27P26842 260 aa17.11■□□□□ 0.33
LIG1-204ENST00000542460 PTGER3P43115 390 aa17.11■□□□□ 0.33
LIG1-204ENST00000542460 DHPSP49366 369 aaPredicted RBP17.11■□□□□ 0.33
LIG1-204ENST00000542460 LAMB3Q13751 1172 aa17.11■□□□□ 0.33
LIG1-204ENST00000542460 FGL2Q14314 439 aa17.11■□□□□ 0.33
LIG1-204ENST00000542460 POU6F1Q14863 301 aa17.11■□□□□ 0.33
LIG1-204ENST00000542460 LYSMD4Q5XG99 296 aa17.11■□□□□ 0.33
LIG1-204ENST00000542460 Q6ZVL8 140 aa17.11■□□□□ 0.33
LIG1-204ENST00000542460 TECPR1Q7Z6L1 1165 aa17.11■□□□□ 0.33
LIG1-204ENST00000542460 DNASE2BQ8WZ79 361 aa17.11■□□□□ 0.33
LIG1-204ENST00000542460 SEC14L1Q92503 715 aa17.11■□□□□ 0.33
LIG1-204ENST00000542460 SNX19Q92543 992 aa17.11■□□□□ 0.33
LIG1-204ENST00000542460 KLK6Q92876 244 aa17.11■□□□□ 0.33
LIG1-204ENST00000542460 EID2BQ96D98 161 aa17.11■□□□□ 0.33
LIG1-204ENST00000542460 SERPINB12Q96P63 405 aa17.11■□□□□ 0.33
LIG1-204ENST00000542460 HINFPQ9BQA5 517 aa17.11■□□□□ 0.33
LIG1-204ENST00000542460 IL22Q9GZX6 179 aa17.11■□□□□ 0.33
LIG1-204ENST00000542460 EBF2Q9HAK2 575 aa17.11■□□□□ 0.33
LIG1-204ENST00000542460 PKD2L2Q9NZM6 624 aa17.11■□□□□ 0.33
LIG1-204ENST00000542460 DMGDHQ9UI17 866 aaKnown RBP17.11■□□□□ 0.33
LIG1-204ENST00000542460 EML5Q05BV3 1969 aa17.11■□□□□ 0.33
LIG1-204ENST00000542460 TP73O15350 636 aa17.11■□□□□ 0.33
LIG1-204ENST00000542460 PPFIA2O75334 1257 aa17.11■□□□□ 0.33
LIG1-204ENST00000542460 AVILO75366 819 aa17.11■□□□□ 0.33
LIG1-204ENST00000542460 SLU7O95391 586 aaKnown RBP17.11■□□□□ 0.33
LIG1-204ENST00000542460 SLC4A1P02730 911 aa17.11■□□□□ 0.33
LIG1-204ENST00000542460 GM2AP17900 193 aa17.11■□□□□ 0.33
LIG1-204ENST00000542460 LPOP22079 712 aaPredicted RBP17.11■□□□□ 0.33
LIG1-204ENST00000542460 ETV3P41162 512 aa17.11■□□□□ 0.33
LIG1-204ENST00000542460 SESN2P58004 480 aaPredicted RBP17.11■□□□□ 0.33
LIG1-204ENST00000542460 TUBB4BP68371 445 aa17.11■□□□□ 0.33
LIG1-204ENST00000542460 GUCY2DQ02846 1103 aa17.11■□□□□ 0.33
LIG1-204ENST00000542460 CAV1Q03135 178 aa17.11■□□□□ 0.33
LIG1-204ENST00000542460 NUMA1Q14980 2115 aa17.11■□□□□ 0.33
LIG1-204ENST00000542460 ARMCX6Q7L4S7 300 aa17.11■□□□□ 0.33
LIG1-204ENST00000542460 CYP2U1Q7Z449 544 aa17.11■□□□□ 0.33
LIG1-204ENST00000542460 NRSN1Q8IZ57 195 aa17.11■□□□□ 0.33
LIG1-204ENST00000542460 LRRN4CLQ8ND94 238 aa17.11■□□□□ 0.33
LIG1-204ENST00000542460 DTD2Q96FN9 168 aa17.11■□□□□ 0.33
LIG1-204ENST00000542460 LENG8Q96PV6 779 aaPredicted RBP17.11■□□□□ 0.33
LIG1-204ENST00000542460 RANBP9Q96S59 729 aa17.11■□□□□ 0.33
LIG1-204ENST00000542460 RAD18Q9NS91 495 aa17.11■□□□□ 0.33
LIG1-204ENST00000542460 GRHL1Q9NZI5 618 aa17.11■□□□□ 0.33
LIG1-204ENST00000542460 EIF2B4Q9UI10 523 aaKnown RBP17.11■□□□□ 0.33
LIG1-204ENST00000542460 PKP3Q9Y446 797 aa17.11■□□□□ 0.33
LIG1-204ENST00000542460 ARL5AQ9Y689 179 aa17.11■□□□□ 0.33
LIG1-204ENST00000542460 CACNA1HO95180 2353 aa17.11■□□□□ 0.33
LIG1-204ENST00000542460 VPS13AQ96RL7 3174 aa17.1■□□□□ 0.33
LIG1-204ENST00000542460 HEATR9A2RTY3 570 aa17.1■□□□□ 0.33
LIG1-204ENST00000542460 PRAMEF26H0Y7S4 382 aa17.1■□□□□ 0.33
LIG1-204ENST00000542460 LDB2O43679 373 aa17.1■□□□□ 0.33
LIG1-204ENST00000542460 HNRNPA2B1P22626 353 aaKnown RBP17.1■□□□□ 0.33
LIG1-204ENST00000542460 ADRA1DP25100 572 aa17.1■□□□□ 0.33
LIG1-204ENST00000542460 MAGEA3P43357 314 aa17.1■□□□□ 0.33
LIG1-204ENST00000542460 SPINT3P49223 89 aa17.1■□□□□ 0.33
LIG1-204ENST00000542460 SEPT6Q14141 434 aa17.1■□□□□ 0.33
LIG1-204ENST00000542460 LRRC14Q15048 493 aa17.1■□□□□ 0.33
LIG1-204ENST00000542460 PCID2Q5JVF3 399 aa17.1■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms