RNA–Protein interactions for RNA: ENST00000542033.5

USP28-210, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 852 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-210ENST00000542033 CCDC91Q7Z6B0 441 aa3.34□□□□□ -1.87
USP28-210ENST00000542033 KIAA2013Q8IYS2 634 aa3.34□□□□□ -1.87
USP28-210ENST00000542033 TTC39CQ8N584 583 aa3.34□□□□□ -1.87
USP28-210ENST00000542033 PLD5Q8N7P1 536 aa3.34□□□□□ -1.87
USP28-210ENST00000542033 FAM120BQ96EK7 910 aaKnown RBP3.34□□□□□ -1.87
USP28-210ENST00000542033 CALML4Q96GE6 196 aa3.34□□□□□ -1.87
USP28-210ENST00000542033 AGAP3Q96P47 875 aa3.34□□□□□ -1.87
USP28-210ENST00000542033 BBS4Q96RK4 519 aa3.34□□□□□ -1.87
USP28-210ENST00000542033 SIN3AQ96ST3 1273 aa3.34□□□□□ -1.87
USP28-210ENST00000542033 SLF1Q9BQI6 1058 aa3.34□□□□□ -1.87
USP28-210ENST00000542033 TMEM204Q9BSN7 226 aa3.34□□□□□ -1.87
USP28-210ENST00000542033 NUF2Q9BZD4 464 aa3.34□□□□□ -1.87
USP28-210ENST00000542033 SEPT11Q9NVA2 429 aaKnown RBP3.34□□□□□ -1.87
USP28-210ENST00000542033 ANKRD10Q9NXR5 420 aa3.34□□□□□ -1.87
USP28-210ENST00000542033 MPP6Q9NZW5 540 aa3.34□□□□□ -1.87
USP28-210ENST00000542033 STK26Q9P289 416 aa3.34□□□□□ -1.87
USP28-210ENST00000542033 CTNNAL1Q9UBT7 734 aa3.34□□□□□ -1.87
USP28-210ENST00000542033 CFDP1Q9UEE9 299 aaPredicted RBP3.34□□□□□ -1.87
USP28-210ENST00000542033 NDRG3Q9UGV2 375 aa3.34□□□□□ -1.87
USP28-210ENST00000542033 CARD8Q9Y2G2 431 aa3.34□□□□□ -1.87
USP28-210ENST00000542033 DDX52Q9Y2R4 599 aaKnown RBP eCLIP3.34□□□□□ -1.87
USP28-210ENST00000542033 PAM16Q9Y3D7 125 aa3.34□□□□□ -1.87
USP28-210ENST00000542033 RAI2Q9Y5P3 530 aa3.34□□□□□ -1.87
USP28-210ENST00000542033 IL16Q14005 1332 aa3.34□□□□□ -1.87
USP28-210ENST00000542033 ADGRF5Q8IZF2 1346 aa3.34□□□□□ -1.87
USP28-210ENST00000542033 CBY3A6NI87 242 aa3.33□□□□□ -1.88
USP28-210ENST00000542033 AGAP14A8MT82 685 aa3.33□□□□□ -1.88
USP28-210ENST00000542033 LACTBL1A8MY62 500 aa3.33□□□□□ -1.88
USP28-210ENST00000542033 PTGES3LE9PB15 166 aa3.33□□□□□ -1.88
USP28-210ENST00000542033 VILLO15195 856 aa3.33□□□□□ -1.88
USP28-210ENST00000542033 DNTTP04053 509 aa3.33□□□□□ -1.88
USP28-210ENST00000542033 HSP90AB1P08238 724 aaKnown RBP3.33□□□□□ -1.88
USP28-210ENST00000542033 SPARCP09486 303 aa3.33□□□□□ -1.88
USP28-210ENST00000542033 CSH1P0DML2 217 aa3.33□□□□□ -1.88
USP28-210ENST00000542033 CSH2P0DML3 217 aa3.33□□□□□ -1.88
USP28-210ENST00000542033 IRF1P10914 325 aa3.33□□□□□ -1.88
USP28-210ENST00000542033 CAPN2P17655 700 aa3.33□□□□□ -1.88
USP28-210ENST00000542033 CDH2P19022 906 aaPredicted RBP3.33□□□□□ -1.88
USP28-210ENST00000542033 TM4SF1P30408 202 aa3.33□□□□□ -1.88
USP28-210ENST00000542033 CCKARP32238 428 aa3.33□□□□□ -1.88
USP28-210ENST00000542033 RYKP34925 604 aa3.33□□□□□ -1.88
USP28-210ENST00000542033 PSMB10P40306 273 aa3.33□□□□□ -1.88
USP28-210ENST00000542033 RGS2P41220 211 aa3.33□□□□□ -1.88
USP28-210ENST00000542033 PCYT1AP49585 367 aa3.33□□□□□ -1.88
USP28-210ENST00000542033 GSCP56915 257 aaPredicted RBP3.33□□□□□ -1.88
USP28-210ENST00000542033 NLRP5P59047 1200 aa3.33□□□□□ -1.88
USP28-210ENST00000542033 ST3GAL1Q11201 340 aa3.33□□□□□ -1.88
USP28-210ENST00000542033 TRAF2Q12933 501 aa3.33□□□□□ -1.88
USP28-210ENST00000542033 TMED1Q13445 227 aa3.33□□□□□ -1.88
USP28-210ENST00000542033 PPP2R5BQ15173 497 aa3.33□□□□□ -1.88
USP28-210ENST00000542033 HIST2H2ACQ16777 129 aaPredicted RBP3.33□□□□□ -1.88
USP28-210ENST00000542033 DUSP28Q4G0W2 176 aa3.33□□□□□ -1.88
USP28-210ENST00000542033 PRAMEF19Q5SWL8 479 aa3.33□□□□□ -1.88
USP28-210ENST00000542033 CPLX2Q6PUV4 134 aaKnown RBP3.33□□□□□ -1.88
USP28-210ENST00000542033 CYP20A1Q6UW02 462 aa3.33□□□□□ -1.88
USP28-210ENST00000542033 CCDC73Q6ZRK6 1079 aa3.33□□□□□ -1.88
USP28-210ENST00000542033 IKBIPQ70UQ0 350 aa3.33□□□□□ -1.88
USP28-210ENST00000542033 OTUD6AQ7L8S5 288 aa3.33□□□□□ -1.88
USP28-210ENST00000542033 PRPF39Q86UA1 669 aaKnown RBP3.33□□□□□ -1.88
USP28-210ENST00000542033 MB21D2Q8IYB1 491 aaPredicted RBP3.33□□□□□ -1.88
USP28-210ENST00000542033 NKAIN3Q8N8D7 197 aa3.33□□□□□ -1.88
USP28-210ENST00000542033 PRR26Q8N8Z3 221 aa3.33□□□□□ -1.88
USP28-210ENST00000542033 GJC3Q8NFK1 279 aa3.33□□□□□ -1.88
USP28-210ENST00000542033 OR14A16Q8NHC5 309 aa3.33□□□□□ -1.88
USP28-210ENST00000542033 GPT2Q8TD30 523 aa3.33□□□□□ -1.88
USP28-210ENST00000542033 SYAP1Q96A49 352 aaPredicted RBP3.33□□□□□ -1.88
USP28-210ENST00000542033 KLHL29Q96CT2 875 aa3.33□□□□□ -1.88
USP28-210ENST00000542033 BAG1Q99933 345 aaPredicted RBP3.33□□□□□ -1.88
USP28-210ENST00000542033 MSTO1Q9BUK6 570 aa3.33□□□□□ -1.88
USP28-210ENST00000542033 TXLNGYQ9BZA5 131 aa3.33□□□□□ -1.88
USP28-210ENST00000542033 SH3GLB2Q9NR46 395 aa3.33□□□□□ -1.88
USP28-210ENST00000542033 C20orf141Q9NUB4 165 aa3.33□□□□□ -1.88
USP28-210ENST00000542033 UTP6Q9NYH9 597 aaKnown RBP3.33□□□□□ -1.88
USP28-210ENST00000542033 CWC15Q9P013 229 aaKnown RBP3.33□□□□□ -1.88
USP28-210ENST00000542033 LIMA1Q9UHB6 759 aaKnown RBP3.33□□□□□ -1.88
USP28-210ENST00000542033 ZNF215Q9UL58 517 aaPredicted RBP3.33□□□□□ -1.88
USP28-210ENST00000542033 PCDHA7Q9UN72 937 aa3.33□□□□□ -1.88
USP28-210ENST00000542033 FAM96BQ9Y3D0 163 aa3.33□□□□□ -1.88
USP28-210ENST00000542033 NCAPD3P42695 1498 aa3.33□□□□□ -1.88
USP28-210ENST00000542033 CACNA1IQ9P0X4 2223 aa3.32□□□□□ -1.88
USP28-210ENST00000542033 FAM170AA1A519 330 aa3.32□□□□□ -1.88
USP28-210ENST00000542033 LIPT2A6NK58 231 aa3.32□□□□□ -1.88
USP28-210ENST00000542033 HSPB2A8KAH6 182 aa3.32□□□□□ -1.88
USP28-210ENST00000542033 KLRF2D3W0D1 207 aa3.32□□□□□ -1.88
USP28-210ENST00000542033 PES1O00541 588 aaKnown RBP3.32□□□□□ -1.88
USP28-210ENST00000542033 KIF5CO60282 957 aa3.32□□□□□ -1.88
USP28-210ENST00000542033 RGS11O94810 467 aa3.32□□□□□ -1.88
USP28-210ENST00000542033 PRSS2P07478 247 aa3.32□□□□□ -1.88
USP28-210ENST00000542033 NR2F1P10589 423 aa3.32□□□□□ -1.88
USP28-210ENST00000542033 SRD5A1P18405 259 aa3.32□□□□□ -1.88
USP28-210ENST00000542033 NFKBIAP25963 317 aa3.32□□□□□ -1.88
USP28-210ENST00000542033 HOXA11P31270 313 aaPredicted RBP3.32□□□□□ -1.88
USP28-210ENST00000542033 TRPC1P48995 793 aa3.32□□□□□ -1.88
USP28-210ENST00000542033 CTCFP49711 727 aaPredicted RBP3.32□□□□□ -1.88
USP28-210ENST00000542033 CLDN2P57739 230 aa3.32□□□□□ -1.88
USP28-210ENST00000542033 SNX16P57768 344 aa3.32□□□□□ -1.88
USP28-210ENST00000542033 IRX1P78414 480 aaPredicted RBP3.32□□□□□ -1.88
USP28-210ENST00000542033 ABATP80404 500 aa3.32□□□□□ -1.88
USP28-210ENST00000542033 CRYZQ08257 329 aaKnown RBP3.32□□□□□ -1.88
USP28-210ENST00000542033 AIMP2Q13155 320 aaKnown RBP3.32□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms