RNA–Protein interactions for RNA: ENST00000541953.5

CLSTN3-213, Transcript of calsyntenin 3, humanhuman

TSL 5

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-213ENST00000541953 CARS2Q9HA77 564 aaKnown RBP15.49■□□□□ 0.07
CLSTN3-213ENST00000541953 ZFC3H1O60293 1989 aaKnown RBP15.49■□□□□ 0.07
CLSTN3-213ENST00000541953 ARHGAP42A6NI28 874 aa15.48■□□□□ 0.07
CLSTN3-213ENST00000541953 TNFRSF10CO14798 259 aa15.48■□□□□ 0.07
CLSTN3-213ENST00000541953 PEX11BO96011 259 aa15.48■□□□□ 0.07
CLSTN3-213ENST00000541953 FGF1P05230 155 aa15.48■□□□□ 0.07
CLSTN3-213ENST00000541953 CEACAM5P06731 702 aa15.48■□□□□ 0.07
CLSTN3-213ENST00000541953 PNLIPP16233 465 aa15.48■□□□□ 0.07
CLSTN3-213ENST00000541953 PSMA2P25787 234 aa15.48■□□□□ 0.07
CLSTN3-213ENST00000541953 CSF2RBP32927 897 aa15.48■□□□□ 0.07
CLSTN3-213ENST00000541953 SCNN1BP51168 640 aa15.48■□□□□ 0.07
CLSTN3-213ENST00000541953 BCL2L1Q07817 233 aa15.48■□□□□ 0.07
CLSTN3-213ENST00000541953 MAP9Q49MG5 647 aa15.48■□□□□ 0.07
CLSTN3-213ENST00000541953 MANEAQ5SRI9 462 aa15.48■□□□□ 0.07
CLSTN3-213ENST00000541953 NKAIN2Q5VXU1 208 aa15.48■□□□□ 0.07
CLSTN3-213ENST00000541953 E4F1Q66K89 784 aaPredicted RBP15.48■□□□□ 0.07
CLSTN3-213ENST00000541953 DENND2CQ68D51 928 aa15.48■□□□□ 0.07
CLSTN3-213ENST00000541953 DCUN1D2Q6PH85 259 aa15.48■□□□□ 0.07
CLSTN3-213ENST00000541953 ZNF438Q7Z4V0 828 aa15.48■□□□□ 0.07
CLSTN3-213ENST00000541953 HSD11B1LQ7Z5J1 315 aa15.48■□□□□ 0.07
CLSTN3-213ENST00000541953 TSPAN33Q86UF1 283 aa15.48■□□□□ 0.07
CLSTN3-213ENST00000541953 HEATR4Q86WZ0 1026 aa15.48■□□□□ 0.07
CLSTN3-213ENST00000541953 ATL2Q8NHH9 583 aa15.48■□□□□ 0.07
CLSTN3-213ENST00000541953 GPBAR1Q8TDU6 330 aa15.48■□□□□ 0.07
CLSTN3-213ENST00000541953 PCMTD1Q96MG8 357 aaPredicted RBP15.48■□□□□ 0.07
CLSTN3-213ENST00000541953 FRMD8Q9BZ67 464 aaPredicted RBP15.48■□□□□ 0.07
CLSTN3-213ENST00000541953 SP110Q9HB58 689 aa15.48■□□□□ 0.07
CLSTN3-213ENST00000541953 ETNK2Q9NVF9 386 aa15.48■□□□□ 0.07
CLSTN3-213ENST00000541953 TMEM9Q9P0T7 183 aa15.48■□□□□ 0.07
CLSTN3-213ENST00000541953 LIMA1Q9UHB6 759 aaKnown RBP15.48■□□□□ 0.07
CLSTN3-213ENST00000541953 PCDHGC4Q9Y5F7 938 aa15.48■□□□□ 0.07
CLSTN3-213ENST00000541953 CFAP69A5D8W1 941 aa15.47■□□□□ 0.07
CLSTN3-213ENST00000541953 TMX2-CTNND1H3BSU7 103 aa15.47■□□□□ 0.07
CLSTN3-213ENST00000541953 ARHGAP6O43182 974 aa15.47■□□□□ 0.07
CLSTN3-213ENST00000541953 NUDT21O43809 227 aaKnown RBP15.47■□□□□ 0.07
CLSTN3-213ENST00000541953 ECEL1O95672 775 aa15.47■□□□□ 0.07
CLSTN3-213ENST00000541953 HOXC4P09017 264 aaPredicted RBP15.47■□□□□ 0.07
CLSTN3-213ENST00000541953 MYCLP1P12525 358 aaPredicted RBP15.47■□□□□ 0.07
CLSTN3-213ENST00000541953 CCNB1P14635 433 aa15.47■□□□□ 0.07
CLSTN3-213ENST00000541953 MPSTP25325 297 aa15.47■□□□□ 0.07
CLSTN3-213ENST00000541953 MIPP30301 263 aa15.47■□□□□ 0.07
CLSTN3-213ENST00000541953 ETV3P41162 512 aa15.47■□□□□ 0.07
CLSTN3-213ENST00000541953 GNPDA1P46926 289 aa15.47■□□□□ 0.07
CLSTN3-213ENST00000541953 UBXN1Q04323 297 aa15.47■□□□□ 0.07
CLSTN3-213ENST00000541953 TRAF2Q12933 501 aa15.47■□□□□ 0.07
CLSTN3-213ENST00000541953 DPYSQ14117 519 aa15.47■□□□□ 0.07
CLSTN3-213ENST00000541953 ARHGEF7Q14155 803 aa15.47■□□□□ 0.07
CLSTN3-213ENST00000541953 PPP6R3Q5H9R7 873 aaPredicted RBP15.47■□□□□ 0.07
CLSTN3-213ENST00000541953 CT47A1Q5JQC4 288 aaPredicted RBP15.47■□□□□ 0.07
CLSTN3-213ENST00000541953 IRF2BP2Q7Z5L9 587 aa15.47■□□□□ 0.07
CLSTN3-213ENST00000541953 FNIP1Q8TF40 1166 aa15.47■□□□□ 0.07
CLSTN3-213ENST00000541953 ZDHHC1Q8WTX9 485 aa15.47■□□□□ 0.07
CLSTN3-213ENST00000541953 NUS1Q96E22 293 aa15.47■□□□□ 0.07
CLSTN3-213ENST00000541953 CCDC74BQ96LY2 380 aa15.47■□□□□ 0.07
CLSTN3-213ENST00000541953 ERGIC2Q96RQ1 377 aa15.47■□□□□ 0.07
CLSTN3-213ENST00000541953 LMBRD1Q9NUN5 540 aa15.47■□□□□ 0.07
CLSTN3-213ENST00000541953 CHMP5Q9NZZ3 219 aa15.47■□□□□ 0.07
CLSTN3-213ENST00000541953 CWC15Q9P013 229 aaKnown RBP15.47■□□□□ 0.07
CLSTN3-213ENST00000541953 TAAR2Q9P1P5 351 aa15.47■□□□□ 0.07
CLSTN3-213ENST00000541953 SUFUQ9UMX1 484 aa15.47■□□□□ 0.07
CLSTN3-213ENST00000541953 PCYT1BQ9Y5K3 369 aaPredicted RBP15.47■□□□□ 0.07
CLSTN3-213ENST00000541953 IGHV5-10-1A0A0J9YXX1 117 aa15.46■□□□□ 0.07
CLSTN3-213ENST00000541953 NPIPB15A6NHN6 443 aaPredicted RBP15.46■□□□□ 0.07
CLSTN3-213ENST00000541953 HTRA2O43464 458 aaPredicted RBP15.46■□□□□ 0.07
CLSTN3-213ENST00000541953 HEXIM1O94992 359 aaKnown RBP15.46■□□□□ 0.07
CLSTN3-213ENST00000541953 SOD1P00441 154 aa15.46■□□□□ 0.07
CLSTN3-213ENST00000541953 ITGB2P05107 769 aa15.46■□□□□ 0.07
CLSTN3-213ENST00000541953 FGF3P11487 239 aaPredicted RBP15.46■□□□□ 0.07
CLSTN3-213ENST00000541953 ATP1A3P13637 1013 aa15.46■□□□□ 0.07
CLSTN3-213ENST00000541953 CR2P20023 1033 aa15.46■□□□□ 0.07
CLSTN3-213ENST00000541953 CD1CP29017 333 aa15.46■□□□□ 0.07
CLSTN3-213ENST00000541953 ALDH4A1P30038 563 aa15.46■□□□□ 0.07
CLSTN3-213ENST00000541953 HTR7P34969 479 aa15.46■□□□□ 0.07
CLSTN3-213ENST00000541953 MAXP61244 160 aa15.46■□□□□ 0.07
CLSTN3-213ENST00000541953 IL10RBQ08334 325 aa15.46■□□□□ 0.07
CLSTN3-213ENST00000541953 NCAPHQ15003 741 aa15.46■□□□□ 0.07
CLSTN3-213ENST00000541953 ERMARDQ5T6L9 678 aa15.46■□□□□ 0.07
CLSTN3-213ENST00000541953 PLEKHA7Q6IQ23 1121 aa15.46■□□□□ 0.07
CLSTN3-213ENST00000541953 SLC30A9Q6PML9 568 aa15.46■□□□□ 0.07
CLSTN3-213ENST00000541953 RBM43Q6ZSC3 357 aaKnown RBP15.46■□□□□ 0.07
CLSTN3-213ENST00000541953 ZNF761Q86XN6 746 aaPredicted RBP15.46■□□□□ 0.07
CLSTN3-213ENST00000541953 NAGSQ8N159 534 aa15.46■□□□□ 0.07
CLSTN3-213ENST00000541953 CBARPQ8N350 705 aaPredicted RBP15.46■□□□□ 0.07
CLSTN3-213ENST00000541953 PSKH2Q96QS6 385 aa15.46■□□□□ 0.07
CLSTN3-213ENST00000541953 CMKLR1Q99788 373 aa15.46■□□□□ 0.07
CLSTN3-213ENST00000541953 TEX101Q9BY14 249 aa15.46■□□□□ 0.07
CLSTN3-213ENST00000541953 FAM117AQ9C073 453 aa15.46■□□□□ 0.07
CLSTN3-213ENST00000541953 A0A1W2PQC6 194 aa15.45■□□□□ 0.06
CLSTN3-213ENST00000541953 ANKRD62A6NC57 917 aa15.45■□□□□ 0.06
CLSTN3-213ENST00000541953 TMEM191CA6NGB0 347 aa15.45■□□□□ 0.06
CLSTN3-213ENST00000541953 PPM1DO15297 605 aa15.45■□□□□ 0.06
CLSTN3-213ENST00000541953 SUV39H1O43463 412 aa15.45■□□□□ 0.06
CLSTN3-213ENST00000541953 LRCH4O75427 683 aa15.45■□□□□ 0.06
CLSTN3-213ENST00000541953 CPNE6O95741 557 aa15.45■□□□□ 0.06
CLSTN3-213ENST00000541953 IL1R2P27930 398 aa15.45■□□□□ 0.06
CLSTN3-213ENST00000541953 AP1S1P61966 158 aa15.45■□□□□ 0.06
CLSTN3-213ENST00000541953 CDK3Q00526 305 aa15.45■□□□□ 0.06
CLSTN3-213ENST00000541953 NSUN2Q08J23 767 aaKnown RBP eCLIP15.45■□□□□ 0.06
CLSTN3-213ENST00000541953 IHHQ14623 411 aa15.45■□□□□ 0.06
CLSTN3-213ENST00000541953 LBRQ14739 615 aaKnown RBP15.45■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms