RNA–Protein interactions for RNA: ENST00000534705.5

USP48-215, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 4

Gene USP48, Length 566 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-215ENST00000534705 HALP42357 657 aa3.65□□□□□ -1.83
USP48-215ENST00000534705 CRKLP46109 303 aaKnown RBP3.65□□□□□ -1.83
USP48-215ENST00000534705 PPP3CCP48454 512 aa3.65□□□□□ -1.83
USP48-215ENST00000534705 CENPAP49450 140 aa3.65□□□□□ -1.83
USP48-215ENST00000534705 CDH12P55289 794 aa3.65□□□□□ -1.83
USP48-215ENST00000534705 DSC1Q08554 894 aa3.65□□□□□ -1.83
USP48-215ENST00000534705 TBL3Q12788 808 aaKnown RBP3.65□□□□□ -1.83
USP48-215ENST00000534705 TRAF1Q13077 416 aa3.65□□□□□ -1.83
USP48-215ENST00000534705 PPFIA1Q13136 1202 aa3.65□□□□□ -1.83
USP48-215ENST00000534705 BIRC3Q13489 604 aa3.65□□□□□ -1.83
USP48-215ENST00000534705 TAF5Q15542 800 aa3.65□□□□□ -1.83
USP48-215ENST00000534705 AP5B1Q2VPB7 878 aa3.65□□□□□ -1.83
USP48-215ENST00000534705 SLC4A8Q2Y0W8 1093 aa3.65□□□□□ -1.83
USP48-215ENST00000534705 C9orf50Q5SZB4 431 aa3.65□□□□□ -1.83
USP48-215ENST00000534705 MAP3K21Q5TCX8 1036 aa3.65□□□□□ -1.83
USP48-215ENST00000534705 LDHAL6AQ6ZMR3 332 aa3.65□□□□□ -1.83
USP48-215ENST00000534705 Q6ZSV7 163 aa3.65□□□□□ -1.83
USP48-215ENST00000534705 BBS12Q6ZW61 710 aa3.65□□□□□ -1.83
USP48-215ENST00000534705 MCM10Q7L590 875 aa3.65□□□□□ -1.83
USP48-215ENST00000534705 ANKRD18AQ8IVF6 992 aa3.65□□□□□ -1.83
USP48-215ENST00000534705 SUGP1Q8IWZ8 645 aaKnown RBP3.65□□□□□ -1.83
USP48-215ENST00000534705 PRR26Q8N8Z3 221 aa3.65□□□□□ -1.83
USP48-215ENST00000534705 OR4N2Q8NGD1 307 aa3.65□□□□□ -1.83
USP48-215ENST00000534705 CEP76Q8TAP6 659 aa3.65□□□□□ -1.83
USP48-215ENST00000534705 TMEM170AQ8WVE7 144 aa3.65□□□□□ -1.83
USP48-215ENST00000534705 RILPL2Q969X0 211 aa3.65□□□□□ -1.83
USP48-215ENST00000534705 CTDSP1Q9GZU7 261 aa3.65□□□□□ -1.83
USP48-215ENST00000534705 CD93Q9NPY3 652 aa3.65□□□□□ -1.83
USP48-215ENST00000534705 ITM2CQ9NQX7 267 aa3.65□□□□□ -1.83
USP48-215ENST00000534705 TMEM51Q9NW97 253 aa3.65□□□□□ -1.83
USP48-215ENST00000534705 CDH22Q9UJ99 828 aa3.65□□□□□ -1.83
USP48-215ENST00000534705 FBXO2Q9UK22 296 aaPredicted RBP3.65□□□□□ -1.83
USP48-215ENST00000534705 NUDCQ9Y266 331 aa3.65□□□□□ -1.83
USP48-215ENST00000534705 GPR52Q9Y2T5 361 aa3.65□□□□□ -1.83
USP48-215ENST00000534705 MYH13Q9UKX3 1938 aa3.65□□□□□ -1.83
USP48-215ENST00000534705 PXDNLA1KZ92 1463 aa3.65□□□□□ -1.83
USP48-215ENST00000534705 SOS1Q07889 1333 aaPredicted RBP3.65□□□□□ -1.83
USP48-215ENST00000534705 COL4A1P02462 1669 aa3.65□□□□□ -1.83
USP48-215ENST00000534705 LTBP1Q14766 1721 aa3.64□□□□□ -1.83
USP48-215ENST00000534705 VWA3AA6NCI4 1184 aa3.64□□□□□ -1.83
USP48-215ENST00000534705 KRTAP9-6A8MVA2 160 aa3.64□□□□□ -1.83
USP48-215ENST00000534705 INAFM1C9JVW0 142 aa3.64□□□□□ -1.83
USP48-215ENST00000534705 I6L893 689 aaPredicted RBP3.64□□□□□ -1.83
USP48-215ENST00000534705 EYA2O00167 538 aa3.64□□□□□ -1.83
USP48-215ENST00000534705 LDB2O43679 373 aa3.64□□□□□ -1.83
USP48-215ENST00000534705 HTATSF1O43719 755 aaKnown RBP3.64□□□□□ -1.83
USP48-215ENST00000534705 SERPINC1P01008 464 aa3.64□□□□□ -1.83
USP48-215ENST00000534705 CHRM4P08173 479 aa3.64□□□□□ -1.83
USP48-215ENST00000534705 HSD3B1P14060 373 aa3.64□□□□□ -1.83
USP48-215ENST00000534705 DDIT3P35638 169 aa3.64□□□□□ -1.83
USP48-215ENST00000534705 CCT5P48643 541 aa3.64□□□□□ -1.83
USP48-215ENST00000534705 MMP14P50281 582 aa3.64□□□□□ -1.83
USP48-215ENST00000534705 POU5F1Q01860 360 aaKnown RBP3.64□□□□□ -1.83
USP48-215ENST00000534705 CRYZQ08257 329 aaKnown RBP3.64□□□□□ -1.83
USP48-215ENST00000534705 SLC20A2Q08357 652 aa3.64□□□□□ -1.83
USP48-215ENST00000534705 TRAF2Q12933 501 aa3.64□□□□□ -1.83
USP48-215ENST00000534705 ZNF585BQ52M93 769 aa3.64□□□□□ -1.83
USP48-215ENST00000534705 FSCBQ5H9T9 825 aa3.64□□□□□ -1.83
USP48-215ENST00000534705 FNBP1LQ5T0N5 605 aa3.64□□□□□ -1.83
USP48-215ENST00000534705 ZNF790Q6PG37 636 aa3.64□□□□□ -1.83
USP48-215ENST00000534705 ZNF367Q7RTV3 350 aa3.64□□□□□ -1.83
USP48-215ENST00000534705 SPATA2LQ8IUW3 424 aaPredicted RBP3.64□□□□□ -1.83
USP48-215ENST00000534705 RBFAQ8N0V3 343 aa3.64□□□□□ -1.83
USP48-215ENST00000534705 RAB40AQ8WXH6 277 aa3.64□□□□□ -1.83
USP48-215ENST00000534705 TRIM63Q969Q1 353 aa3.64□□□□□ -1.83
USP48-215ENST00000534705 ZPBPQ9BS86 351 aa3.64□□□□□ -1.83
USP48-215ENST00000534705 SYT17Q9BSW7 474 aa3.64□□□□□ -1.83
USP48-215ENST00000534705 THUMPD2Q9BTF0 503 aaKnown RBP3.64□□□□□ -1.83
USP48-215ENST00000534705 CXorf56Q9H5V9 222 aa3.64□□□□□ -1.83
USP48-215ENST00000534705 STN1Q9H668 368 aaKnown RBP3.64□□□□□ -1.83
USP48-215ENST00000534705 ENTPD7Q9NQZ7 604 aa3.64□□□□□ -1.83
USP48-215ENST00000534705 LUZP4Q9P127 313 aa3.64□□□□□ -1.83
USP48-215ENST00000534705 PLEKHB1Q9UF11 243 aaPredicted RBP3.64□□□□□ -1.83
USP48-215ENST00000534705 CNPY2Q9Y2B0 182 aa3.64□□□□□ -1.83
USP48-215ENST00000534705 INSL5Q9Y5Q6 135 aa3.64□□□□□ -1.83
USP48-215ENST00000534705 USP42Q9H9J4 1324 aaKnown RBP3.64□□□□□ -1.83
USP48-215ENST00000534705 SCN9AQ15858 1988 aa3.63□□□□□ -1.83
USP48-215ENST00000534705 TCF20Q9UGU0 1960 aaKnown RBP3.63□□□□□ -1.83
USP48-215ENST00000534705 ECM29Q5VYK3 1845 aa3.63□□□□□ -1.83
USP48-215ENST00000534705 TRPM7Q96QT4 1865 aa3.63□□□□□ -1.83
USP48-215ENST00000534705 DDTLA6NHG4 134 aaPredicted RBP3.63□□□□□ -1.83
USP48-215ENST00000534705 FAM90A7PA6NKC0 464 aa3.63□□□□□ -1.83
USP48-215ENST00000534705 FAM90A22PA8MWA6 464 aa3.63□□□□□ -1.83
USP48-215ENST00000534705 FAM90A12PA8MX19 464 aa3.63□□□□□ -1.83
USP48-215ENST00000534705 FAM90A23PA8MXZ1 464 aa3.63□□□□□ -1.83
USP48-215ENST00000534705 FAM157AC9JC47 383 aa3.63□□□□□ -1.83
USP48-215ENST00000534705 EBAG9O00559 213 aa3.63□□□□□ -1.83
USP48-215ENST00000534705 ASAP2O43150 1006 aa3.63□□□□□ -1.83
USP48-215ENST00000534705 ANP32CO43423 234 aa3.63□□□□□ -1.83
USP48-215ENST00000534705 PIP5K1CO60331 668 aa3.63□□□□□ -1.83
USP48-215ENST00000534705 CBX6O95503 412 aa3.63□□□□□ -1.83
USP48-215ENST00000534705 GLUD1P00367 558 aa3.63□□□□□ -1.83
USP48-215ENST00000534705 ADAP00813 363 aa3.63□□□□□ -1.83
USP48-215ENST00000534705 LDHCP07864 332 aa3.63□□□□□ -1.83
USP48-215ENST00000534705 WEE2P0C1S8 567 aa3.63□□□□□ -1.83
USP48-215ENST00000534705 MCCP23508 829 aa3.63□□□□□ -1.83
USP48-215ENST00000534705 TM4SF1P30408 202 aa3.63□□□□□ -1.83
USP48-215ENST00000534705 DCTDP32321 178 aa3.63□□□□□ -1.83
USP48-215ENST00000534705 RFC1P35251 1148 aaPredicted RBP3.63□□□□□ -1.83
USP48-215ENST00000534705 TMPOP42166 694 aaKnown RBP3.63□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 50.1 ms