RNA–Protein interactions for RNA: ENST00000532339.1

CD44-235, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-235ENST00000532339 FAM90A5PA8MXJ8 464 aa4.15□□□□□ -1.75
CD44-235ENST00000532339 J3KRW8 73 aa4.15□□□□□ -1.75
CD44-235ENST00000532339 KINO60870 393 aaKnown RBP4.15□□□□□ -1.75
CD44-235ENST00000532339 PPP6R2O75170 966 aa4.15□□□□□ -1.75
CD44-235ENST00000532339 CNTN5O94779 1100 aa4.15□□□□□ -1.75
CD44-235ENST00000532339 WNT1P04628 370 aa4.15□□□□□ -1.75
CD44-235ENST00000532339 POLBP06746 335 aa4.15□□□□□ -1.75
CD44-235ENST00000532339 FAM90A15PP0C7V4 464 aa4.15□□□□□ -1.75
CD44-235ENST00000532339 FAM90A14PP0C7W9 464 aa4.15□□□□□ -1.75
CD44-235ENST00000532339 TGM2P21980 687 aa4.15□□□□□ -1.75
CD44-235ENST00000532339 CCNA1P78396 465 aa4.15□□□□□ -1.75
CD44-235ENST00000532339 TBX2Q13207 712 aaPredicted RBP4.15□□□□□ -1.75
CD44-235ENST00000532339 CUL4BQ13620 913 aa4.15□□□□□ -1.75
CD44-235ENST00000532339 GRB14Q14449 540 aa4.15□□□□□ -1.75
CD44-235ENST00000532339 GRM4Q14833 912 aa4.15□□□□□ -1.75
CD44-235ENST00000532339 ADCK5Q3MIX3 580 aa4.15□□□□□ -1.75
CD44-235ENST00000532339 ZNF585BQ52M93 769 aa4.15□□□□□ -1.75
CD44-235ENST00000532339 TTC22Q5TAA0 569 aa4.15□□□□□ -1.75
CD44-235ENST00000532339 MSANTD2Q6P1R3 559 aa4.15□□□□□ -1.75
CD44-235ENST00000532339 WDR93Q6P2C0 686 aa4.15□□□□□ -1.75
CD44-235ENST00000532339 NRSN1Q8IZ57 195 aa4.15□□□□□ -1.75
CD44-235ENST00000532339 FBXL14Q8N1E6 418 aa4.15□□□□□ -1.75
CD44-235ENST00000532339 ADPRHL1Q8NDY3 354 aa4.15□□□□□ -1.75
CD44-235ENST00000532339 OR52N4Q8NGI2 321 aa4.15□□□□□ -1.75
CD44-235ENST00000532339 TMEM174Q8WUU8 243 aa4.15□□□□□ -1.75
CD44-235ENST00000532339 FAM151AQ8WW52 585 aa4.15□□□□□ -1.75
CD44-235ENST00000532339 NPIPB3Q92617 1050 aa4.15□□□□□ -1.75
CD44-235ENST00000532339 ZNF479Q96JC4 524 aa4.15□□□□□ -1.75
CD44-235ENST00000532339 RPGRIP1Q96KN7 1286 aa4.15□□□□□ -1.75
CD44-235ENST00000532339 RTP3Q9BQQ7 232 aa4.15□□□□□ -1.75
CD44-235ENST00000532339 PAAF1Q9BRP4 392 aa4.15□□□□□ -1.75
CD44-235ENST00000532339 NTPCRQ9BSD7 190 aaKnown RBP4.15□□□□□ -1.75
CD44-235ENST00000532339 SF3B5Q9BWJ5 86 aaKnown RBP4.15□□□□□ -1.75
CD44-235ENST00000532339 TWSG1Q9GZX9 223 aa4.15□□□□□ -1.75
CD44-235ENST00000532339 NRBP1Q9UHY1 535 aa4.15□□□□□ -1.75
CD44-235ENST00000532339 PROCRQ9UNN8 238 aa4.15□□□□□ -1.75
CD44-235ENST00000532339 RELNP78509 3460 aa4.15□□□□□ -1.75
CD44-235ENST00000532339 NOTCH2Q04721 2471 aa4.15□□□□□ -1.75
CD44-235ENST00000532339 PTPRFP10586 1907 aa4.15□□□□□ -1.75
CD44-235ENST00000532339 FBN2P35556 2912 aa4.15□□□□□ -1.75
CD44-235ENST00000532339 ROBO3Q96MS0 1386 aa4.14□□□□□ -1.75
CD44-235ENST00000532339 PNMA6EA0A0J9YXQ4 647 aa4.14□□□□□ -1.75
CD44-235ENST00000532339 C4orf47A7E2U8 309 aa4.14□□□□□ -1.75
CD44-235ENST00000532339 PRSS44E7EML9 344 aa4.14□□□□□ -1.75
CD44-235ENST00000532339 H0Y3Z8 333 aa4.14□□□□□ -1.75
CD44-235ENST00000532339 J3QKU1 62 aa4.14□□□□□ -1.75
CD44-235ENST00000532339 SLC28A2O43868 658 aa4.14□□□□□ -1.75
CD44-235ENST00000532339 KALRNO60229 2985 aa4.14□□□□□ -1.75
CD44-235ENST00000532339 TBX10O75333 385 aa4.14□□□□□ -1.75
CD44-235ENST00000532339 TAF5LO75529 589 aa4.14□□□□□ -1.75
CD44-235ENST00000532339 IFNA2P01563 188 aa4.14□□□□□ -1.75
CD44-235ENST00000532339 CNTFP26441 200 aa4.14□□□□□ -1.75
CD44-235ENST00000532339 AKT1P31749 480 aa4.14□□□□□ -1.75
CD44-235ENST00000532339 ARRB2P32121 409 aa4.14□□□□□ -1.75
CD44-235ENST00000532339 SLC37A1P57057 533 aa4.14□□□□□ -1.75
CD44-235ENST00000532339 LMOD3Q0VAK6 560 aa4.14□□□□□ -1.75
CD44-235ENST00000532339 ODF3L2Q3SX64 289 aa4.14□□□□□ -1.75
CD44-235ENST00000532339 KIAA1755Q5JYT7 1200 aa4.14□□□□□ -1.75
CD44-235ENST00000532339 TTC39AQ5SRH9 613 aa4.14□□□□□ -1.75
CD44-235ENST00000532339 RINT1Q6NUQ1 792 aa4.14□□□□□ -1.75
CD44-235ENST00000532339 C15orf52Q6ZUT6 534 aaKnown RBP4.14□□□□□ -1.75
CD44-235ENST00000532339 CYB5R4Q7L1T6 521 aa4.14□□□□□ -1.75
CD44-235ENST00000532339 CCDC117Q8IWD4 279 aaPredicted RBP4.14□□□□□ -1.75
CD44-235ENST00000532339 PAQR4Q8N4S7 273 aaPredicted RBP4.14□□□□□ -1.75
CD44-235ENST00000532339 SLC22A17Q8WUG5 538 aa4.14□□□□□ -1.75
CD44-235ENST00000532339 ZNF347Q96SE7 839 aa4.14□□□□□ -1.75
CD44-235ENST00000532339 MEIS3Q99687 375 aa4.14□□□□□ -1.75
CD44-235ENST00000532339 THUMPD2Q9BTF0 503 aaKnown RBP4.14□□□□□ -1.75
CD44-235ENST00000532339 ANKRD2Q9GZV1 360 aa4.14□□□□□ -1.75
CD44-235ENST00000532339 SLCO5A1Q9H2Y9 848 aa4.14□□□□□ -1.75
CD44-235ENST00000532339 CLMPQ9H6B4 373 aa4.14□□□□□ -1.75
CD44-235ENST00000532339 RIC8AQ9NPQ8 531 aa4.14□□□□□ -1.75
CD44-235ENST00000532339 PCDHA7Q9UN72 937 aa4.14□□□□□ -1.75
CD44-235ENST00000532339 RPS10-NUDT3A0A1W2PQS6 291 aa4.13□□□□□ -1.75
CD44-235ENST00000532339 TNFRSF13BO14836 293 aaPredicted RBP4.13□□□□□ -1.75
CD44-235ENST00000532339 MDM4O15151 490 aa4.13□□□□□ -1.75
CD44-235ENST00000532339 EPB41L2O43491 1005 aaKnown RBP4.13□□□□□ -1.75
CD44-235ENST00000532339 PI15O43692 258 aa4.13□□□□□ -1.75
CD44-235ENST00000532339 RPP40O75818 363 aaKnown RBP4.13□□□□□ -1.75
CD44-235ENST00000532339 BAIAP3O94812 1187 aa4.13□□□□□ -1.75
CD44-235ENST00000532339 NFATC1O95644 943 aa4.13□□□□□ -1.75
CD44-235ENST00000532339 TK1P04183 234 aa4.13□□□□□ -1.75
CD44-235ENST00000532339 SP9P0CG40 484 aa4.13□□□□□ -1.75
CD44-235ENST00000532339 TNFAIP3P21580 790 aa4.13□□□□□ -1.75
CD44-235ENST00000532339 DDIT3P35638 169 aa4.13□□□□□ -1.75
CD44-235ENST00000532339 PAPOLAP51003 745 aaKnown RBP4.13□□□□□ -1.75
CD44-235ENST00000532339 HMGCS2P54868 508 aa4.13□□□□□ -1.75
CD44-235ENST00000532339 GEMIN4P57678 1058 aaKnown RBP4.13□□□□□ -1.75
CD44-235ENST00000532339 COASYQ13057 564 aa4.13□□□□□ -1.75
CD44-235ENST00000532339 SPP2Q13103 211 aa4.13□□□□□ -1.75
CD44-235ENST00000532339 PRAMEF19Q5SWL8 479 aa4.13□□□□□ -1.75
CD44-235ENST00000532339 ATPAF1Q5TC12 328 aaPredicted RBP4.13□□□□□ -1.75
CD44-235ENST00000532339 WDR78Q5VTH9 848 aa4.13□□□□□ -1.75
CD44-235ENST00000532339 NFRKBQ6P4R8 1299 aa4.13□□□□□ -1.75
CD44-235ENST00000532339 C18orf65Q6ZTR6 163 aa4.13□□□□□ -1.75
CD44-235ENST00000532339 RAB11FIP2Q7L804 512 aa4.13□□□□□ -1.75
CD44-235ENST00000532339 ESX1Q8N693 406 aa4.13□□□□□ -1.75
CD44-235ENST00000532339 IQCF1Q8N6M8 205 aa4.13□□□□□ -1.75
CD44-235ENST00000532339 KLHDC9Q8NEP7 349 aa4.13□□□□□ -1.75
CD44-235ENST00000532339 PPHLN1Q8NEY8 458 aaKnown RBP4.13□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 70 ms