RNA–Protein interactions for RNA: ENST00000526025.1

CD44-222, Transcript of CD44 molecule (Indian blood group), human

TSL 2 BASIC

Gene CD44, Length 1,052 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-222	ENST00000526025	SLC31A1	O15431	190 aa		20.76	■□□□□ 0.91
CD44-222	ENST00000526025	FOXD2	O60548	495 aa	Predicted RBP	20.76	■□□□□ 0.91
CD44-222	ENST00000526025	RECQL5	O94762	991 aa	Predicted RBP	20.76	■□□□□ 0.91
CD44-222	ENST00000526025	PAK4	O96013	591 aa	Predicted RBP	20.76	■□□□□ 0.91
CD44-222	ENST00000526025	MAOB	P27338	520 aa		20.76	■□□□□ 0.91
CD44-222	ENST00000526025	SEMG2	Q02383	582 aa		20.76	■□□□□ 0.91
CD44-222	ENST00000526025	PTS	Q03393	145 aa		20.76	■□□□□ 0.91
CD44-222	ENST00000526025	GPS1	Q13098	491 aa		20.76	■□□□□ 0.91
CD44-222	ENST00000526025	PPP1R7	Q15435	360 aa		20.76	■□□□□ 0.91
CD44-222	ENST00000526025	TEAD4	Q15561	434 aa		20.76	■□□□□ 0.91
CD44-222	ENST00000526025	SLC23A3	Q6PIS1	610 aa		20.76	■□□□□ 0.91
CD44-222	ENST00000526025	TMC3	Q7Z5M5	1100 aa		20.76	■□□□□ 0.91
CD44-222	ENST00000526025	TECPR1	Q7Z6L1	1165 aa		20.76	■□□□□ 0.91
CD44-222	ENST00000526025	ABI3BP	Q7Z7G0	1075 aa		20.76	■□□□□ 0.91
CD44-222	ENST00000526025	ZCCHC9	Q8N567	271 aa	Known RBP	20.76	■□□□□ 0.91
CD44-222	ENST00000526025	SLC25A41	Q8N5S1	370 aa		20.76	■□□□□ 0.91
CD44-222	ENST00000526025	MFSD2A	Q8NA29	543 aa		20.76	■□□□□ 0.91
CD44-222	ENST00000526025	TP53I13	Q8NBR0	393 aa	Predicted RBP	20.76	■□□□□ 0.91
CD44-222	ENST00000526025	DTD2	Q96FN9	168 aa		20.76	■□□□□ 0.91
CD44-222	ENST00000526025	SMIM14	Q96QK8	99 aa		20.76	■□□□□ 0.91
CD44-222	ENST00000526025	PHOX2B	Q99453	314 aa		20.76	■□□□□ 0.91
CD44-222	ENST00000526025	CDH19	Q9H159	772 aa		20.76	■□□□□ 0.91
CD44-222	ENST00000526025	ZFYVE1	Q9HBF4	777 aa		20.76	■□□□□ 0.91
CD44-222	ENST00000526025	NFKBIL1	Q9UBC1	381 aa	Predicted RBP	20.76	■□□□□ 0.91
CD44-222	ENST00000526025	ZFHX2	Q9C0A1	2572 aa	Predicted RBP	20.75	■□□□□ 0.91
CD44-222	ENST00000526025	MYLK	Q15746	1914 aa		20.75	■□□□□ 0.91
CD44-222	ENST00000526025		A0A1W2PR77	199 aa		20.75	■□□□□ 0.91
CD44-222	ENST00000526025	AP3B1	O00203	1094 aa		20.75	■□□□□ 0.91
CD44-222	ENST00000526025	WNT9A	O14904	365 aa		20.75	■□□□□ 0.91
CD44-222	ENST00000526025	ZNF500	O60304	480 aa	Predicted RBP	20.75	■□□□□ 0.91
CD44-222	ENST00000526025	APRT	P07741	180 aa		20.75	■□□□□ 0.91
CD44-222	ENST00000526025	LMAN1	P49257	510 aa		20.75	■□□□□ 0.91
CD44-222	ENST00000526025	BASP1	P80723	227 aa	Known RBP	20.75	■□□□□ 0.91
CD44-222	ENST00000526025	DR1	Q01658	176 aa		20.75	■□□□□ 0.91
CD44-222	ENST00000526025	DPT	Q07507	201 aa		20.75	■□□□□ 0.91
CD44-222	ENST00000526025	MSLN	Q13421	630 aa	Predicted RBP	20.75	■□□□□ 0.91
CD44-222	ENST00000526025	STAT4	Q14765	748 aa		20.75	■□□□□ 0.91
CD44-222	ENST00000526025	LRRC14	Q15048	493 aa		20.75	■□□□□ 0.91
CD44-222	ENST00000526025	ACOX1	Q15067	660 aa		20.75	■□□□□ 0.91
CD44-222	ENST00000526025	KYAT3	Q6YP21	454 aa	Known RBP	20.75	■□□□□ 0.91
CD44-222	ENST00000526025	LYSMD3	Q7Z3D4	306 aa		20.75	■□□□□ 0.91
CD44-222	ENST00000526025	HSD11B1L	Q7Z5J1	315 aa		20.75	■□□□□ 0.91
CD44-222	ENST00000526025	KLHL7	Q8IXQ5	586 aa		20.75	■□□□□ 0.91
CD44-222	ENST00000526025	KLK6	Q92876	244 aa		20.75	■□□□□ 0.91
CD44-222	ENST00000526025	SKA1	Q96BD8	255 aa		20.75	■□□□□ 0.91
CD44-222	ENST00000526025	SLC6A18	Q96N87	628 aa		20.75	■□□□□ 0.91
CD44-222	ENST00000526025	CAPN10	Q9HC96	672 aa		20.75	■□□□□ 0.91
CD44-222	ENST00000526025	RAD18	Q9NS91	495 aa		20.75	■□□□□ 0.91
CD44-222	ENST00000526025	PKD2L2	Q9NZM6	624 aa		20.75	■□□□□ 0.91
CD44-222	ENST00000526025	SPO11	Q9Y5K1	396 aa		20.75	■□□□□ 0.91
CD44-222	ENST00000526025	ATXN2	Q99700	1313 aa	Known RBP	20.75	■□□□□ 0.91
CD44-222	ENST00000526025	KNL1	Q8NG31	2342 aa		20.75	■□□□□ 0.91
CD44-222	ENST00000526025		A8MX80	341 aa		20.74	■□□□□ 0.91
CD44-222	ENST00000526025	FPGT	O14772	594 aa		20.74	■□□□□ 0.91
CD44-222	ENST00000526025	VILL	O15195	856 aa		20.74	■□□□□ 0.91
CD44-222	ENST00000526025	RAD51B	O15315	384 aa		20.74	■□□□□ 0.91
CD44-222	ENST00000526025	MAGEC1	O60732	1142 aa		20.74	■□□□□ 0.91
CD44-222	ENST00000526025	CLDN7	O95471	211 aa		20.74	■□□□□ 0.91
CD44-222	ENST00000526025	C1S	P09871	688 aa		20.74	■□□□□ 0.91
CD44-222	ENST00000526025	ZNF806	P0C7X5	589 aa		20.74	■□□□□ 0.91
CD44-222	ENST00000526025	TEAD1	P28347	426 aa		20.74	■□□□□ 0.91
CD44-222	ENST00000526025	CD38	P28907	300 aa		20.74	■□□□□ 0.91
CD44-222	ENST00000526025	HMGCL	P35914	325 aa		20.74	■□□□□ 0.91
CD44-222	ENST00000526025	PDE1B	Q01064	536 aa		20.74	■□□□□ 0.91
CD44-222	ENST00000526025	CDH17	Q12864	832 aa		20.74	■□□□□ 0.91
CD44-222	ENST00000526025	SPARCL1	Q14515	664 aa		20.74	■□□□□ 0.91
CD44-222	ENST00000526025	KCNJ11	Q14654	390 aa		20.74	■□□□□ 0.91
CD44-222	ENST00000526025	PTPRR	Q15256	657 aa		20.74	■□□□□ 0.91
CD44-222	ENST00000526025	TRIP13	Q15645	432 aa	Predicted RBP	20.74	■□□□□ 0.91
CD44-222	ENST00000526025	WSCD2	Q2TBF2	565 aa		20.74	■□□□□ 0.91
CD44-222	ENST00000526025	ZDHHC20	Q5W0Z9	365 aa		20.74	■□□□□ 0.91
CD44-222	ENST00000526025	ESRP1	Q6NXG1	681 aa	Known RBP	20.74	■□□□□ 0.91
CD44-222	ENST00000526025	ASCL5	Q7RTU5	278 aa		20.74	■□□□□ 0.91
CD44-222	ENST00000526025	TAB3	Q8N5C8	712 aa	Predicted RBP	20.74	■□□□□ 0.91
CD44-222	ENST00000526025	GPR161	Q8N6U8	529 aa	Known RBP	20.74	■□□□□ 0.91
CD44-222	ENST00000526025	BRSK1	Q8TDC3	778 aa		20.74	■□□□□ 0.91
CD44-222	ENST00000526025	NUS1	Q96E22	293 aa		20.74	■□□□□ 0.91
CD44-222	ENST00000526025	APOL2	Q9BQE5	337 aa		20.74	■□□□□ 0.91
CD44-222	ENST00000526025	SLC6A14	Q9UN76	642 aa		20.74	■□□□□ 0.91
CD44-222	ENST00000526025	COQ6	Q9Y2Z9	468 aa		20.74	■□□□□ 0.91
CD44-222	ENST00000526025	SLCO1B1	Q9Y6L6	691 aa		20.74	■□□□□ 0.91
CD44-222	ENST00000526025		A6NNZ2	444 aa		20.73	■□□□□ 0.91
CD44-222	ENST00000526025	USP12	O75317	370 aa		20.73	■□□□□ 0.91
CD44-222	ENST00000526025	PPFIA2	O75334	1257 aa		20.73	■□□□□ 0.91
CD44-222	ENST00000526025	PYGL	P06737	847 aa		20.73	■□□□□ 0.91
CD44-222	ENST00000526025	SPINT3	P49223	89 aa		20.73	■□□□□ 0.91
CD44-222	ENST00000526025	DCDC1	P59894	354 aa		20.73	■□□□□ 0.91
CD44-222	ENST00000526025	YPEL5	P62699	121 aa		20.73	■□□□□ 0.91
CD44-222	ENST00000526025	MTM1	Q13496	603 aa		20.73	■□□□□ 0.91
CD44-222	ENST00000526025	IRF4	Q15306	451 aa		20.73	■□□□□ 0.91
CD44-222	ENST00000526025	TAF1A	Q15573	450 aa	Predicted RBP	20.73	■□□□□ 0.91
CD44-222	ENST00000526025	CSRP2	Q16527	193 aa		20.73	■□□□□ 0.91
CD44-222	ENST00000526025	ARMC3	Q5W041	872 aa		20.73	■□□□□ 0.91
CD44-222	ENST00000526025	GCNT7	Q6ZNI0	430 aa		20.73	■□□□□ 0.91
CD44-222	ENST00000526025	MAATS1	Q7Z4T9	603 aa		20.73	■□□□□ 0.91
CD44-222	ENST00000526025	JAML	Q86YT9	394 aa		20.73	■□□□□ 0.91
CD44-222	ENST00000526025	DCP2	Q8IU60	420 aa	Known RBP	20.73	■□□□□ 0.91
CD44-222	ENST00000526025	TTC30B	Q8N4P2	665 aa		20.73	■□□□□ 0.91
CD44-222	ENST00000526025	MNS1	Q8NEH6	495 aa		20.73	■□□□□ 0.91
CD44-222	ENST00000526025	KRT12	Q99456	494 aa		20.73	■□□□□ 0.91

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