RNA–Protein interactions for RNA: ENST00000508604.5

NUP54-208, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-208ENST00000508604 C2CD2Q9Y426 696 aa2.71□□□□□ -1.98
NUP54-208ENST00000508604 IGLV5-45A0A087WSX0 123 aa2.7□□□□□ -1.98
NUP54-208ENST00000508604 C17orf113A0A1B0GUU1 675 aa2.7□□□□□ -1.98
NUP54-208ENST00000508604 ANP32CO43423 234 aa2.7□□□□□ -1.98
NUP54-208ENST00000508604 CEP104O60308 925 aa2.7□□□□□ -1.98
NUP54-208ENST00000508604 DDX5P17844 614 aaKnown RBP2.7□□□□□ -1.98
NUP54-208ENST00000508604 ITGAXP20702 1163 aa2.7□□□□□ -1.98
NUP54-208ENST00000508604 HOXA13P31271 388 aaPredicted RBP2.7□□□□□ -1.98
NUP54-208ENST00000508604 TNFAIP2Q03169 654 aa2.7□□□□□ -1.98
NUP54-208ENST00000508604 PUM3Q15397 648 aaKnown RBP2.7□□□□□ -1.98
NUP54-208ENST00000508604 MMEL1Q495T6 779 aa2.7□□□□□ -1.98
NUP54-208ENST00000508604 DENND1BQ6P3S1 775 aa2.7□□□□□ -1.98
NUP54-208ENST00000508604 ANKRD13AQ8IZ07 590 aa2.7□□□□□ -1.98
NUP54-208ENST00000508604 CEP70Q8NHQ1 597 aa2.7□□□□□ -1.98
NUP54-208ENST00000508604 DUSP19Q8WTR2 217 aa2.7□□□□□ -1.98
NUP54-208ENST00000508604 FAM222BQ8WU58 562 aa2.7□□□□□ -1.98
NUP54-208ENST00000508604 CNOT9Q92600 299 aaKnown RBP2.7□□□□□ -1.98
NUP54-208ENST00000508604 RUBCNQ92622 972 aa2.7□□□□□ -1.98
NUP54-208ENST00000508604 CCDC136Q96JN2 1154 aa2.7□□□□□ -1.98
NUP54-208ENST00000508604 C8orf48Q96LL4 319 aa2.7□□□□□ -1.98
NUP54-208ENST00000508604 SIN3AQ96ST3 1273 aa2.7□□□□□ -1.98
NUP54-208ENST00000508604 RMDN3Q96TC7 470 aa2.7□□□□□ -1.98
NUP54-208ENST00000508604 MXRA8Q9BRK3 442 aa2.7□□□□□ -1.98
NUP54-208ENST00000508604 HAUS8Q9BT25 410 aa2.7□□□□□ -1.98
NUP54-208ENST00000508604 METTL14Q9HCE5 456 aaKnown RBP2.7□□□□□ -1.98
NUP54-208ENST00000508604 SLC52A3Q9NQ40 469 aa2.7□□□□□ -1.98
NUP54-208ENST00000508604 INTS10Q9NVR2 710 aaKnown RBP2.7□□□□□ -1.98
NUP54-208ENST00000508604 TINAGQ9UJW2 476 aa2.7□□□□□ -1.98
NUP54-208ENST00000508604 CARD8Q9Y2G2 431 aa2.7□□□□□ -1.98
NUP54-208ENST00000508604 A0A087WV62 115 aa2.69□□□□□ -1.98
NUP54-208ENST00000508604 KRTAP16-1A8MUX0 517 aa2.69□□□□□ -1.98
NUP54-208ENST00000508604 ACKR2O00590 384 aa2.69□□□□□ -1.98
NUP54-208ENST00000508604 PRSS56P0CW18 603 aa2.69□□□□□ -1.98
NUP54-208ENST00000508604 MYOD1P15172 320 aa2.69□□□□□ -1.98
NUP54-208ENST00000508604 AARSP49588 968 aaKnown RBP eCLIP2.69□□□□□ -1.98
NUP54-208ENST00000508604 ICA1Q05084 483 aa2.69□□□□□ -1.98
NUP54-208ENST00000508604 ITGA9Q13797 1035 aa2.69□□□□□ -1.98
NUP54-208ENST00000508604 ZFP69Q49AA0 526 aa2.69□□□□□ -1.98
NUP54-208ENST00000508604 IL31Q6EBC2 164 aa2.69□□□□□ -1.98
NUP54-208ENST00000508604 LIN54Q6MZP7 749 aa2.69□□□□□ -1.98
NUP54-208ENST00000508604 TTI2Q6NXR4 508 aa2.69□□□□□ -1.98
NUP54-208ENST00000508604 METTL7BQ6UX53 244 aa2.69□□□□□ -1.98
NUP54-208ENST00000508604 NOTCH2NLQ7Z3S9 236 aa2.69□□□□□ -1.98
NUP54-208ENST00000508604 APLFQ8IW19 511 aaPredicted RBP2.69□□□□□ -1.98
NUP54-208ENST00000508604 ZNF440Q8IYI8 595 aa2.69□□□□□ -1.98
NUP54-208ENST00000508604 KIAA2013Q8IYS2 634 aa2.69□□□□□ -1.98
NUP54-208ENST00000508604 TMEM190Q8WZ59 177 aa2.69□□□□□ -1.98
NUP54-208ENST00000508604 ZNF653Q96CK0 615 aa2.69□□□□□ -1.98
NUP54-208ENST00000508604 LTV1Q96GA3 475 aaPredicted RBP2.69□□□□□ -1.98
NUP54-208ENST00000508604 MTERF1Q99551 399 aaKnown RBP2.69□□□□□ -1.98
NUP54-208ENST00000508604 NEURL2Q9BR09 285 aa2.69□□□□□ -1.98
NUP54-208ENST00000508604 TFB2MQ9H5Q4 396 aaKnown RBP2.69□□□□□ -1.98
NUP54-208ENST00000508604 CHODLQ9H9P2 273 aa2.69□□□□□ -1.98
NUP54-208ENST00000508604 LOXL2Q9Y4K0 774 aa2.69□□□□□ -1.98
NUP54-208ENST00000508604 CBY3A6NI87 242 aa2.69□□□□□ -1.98
NUP54-208ENST00000508604 DPEP1P16444 411 aa2.69□□□□□ -1.98
NUP54-208ENST00000508604 PDIA3P30101 505 aaKnown RBP2.69□□□□□ -1.98
NUP54-208ENST00000508604 SLC8A3P57103 927 aa2.69□□□□□ -1.98
NUP54-208ENST00000508604 ZNF790Q6PG37 636 aa2.69□□□□□ -1.98
NUP54-208ENST00000508604 ASB18Q6ZVZ8 466 aa2.69□□□□□ -1.98
NUP54-208ENST00000508604 MOB3CQ70IA8 216 aa2.69□□□□□ -1.98
NUP54-208ENST00000508604 ZNF34Q8IZ26 560 aa2.69□□□□□ -1.98
NUP54-208ENST00000508604 FGFBP3Q8TAT2 258 aa2.69□□□□□ -1.98
NUP54-208ENST00000508604 TAAR8Q969N4 342 aa2.69□□□□□ -1.98
NUP54-208ENST00000508604 FBXL8Q96CD0 374 aa2.69□□□□□ -1.98
NUP54-208ENST00000508604 ERVMER34-1Q9H9K5 563 aa2.69□□□□□ -1.98
NUP54-208ENST00000508604 RPS10P5Q9NQ39 176 aa2.69□□□□□ -1.98
NUP54-208ENST00000508604 KLHL42Q9P2K6 505 aa2.69□□□□□ -1.98
NUP54-208ENST00000508604 OR2W1Q9Y3N9 320 aa2.69□□□□□ -1.98
NUP54-208ENST00000508604 NOTCH2Q04721 2471 aa2.69□□□□□ -1.98
NUP54-208ENST00000508604 CLIC2O15247 247 aa2.68□□□□□ -1.98
NUP54-208ENST00000508604 SYNGR3O43761 229 aa2.68□□□□□ -1.98
NUP54-208ENST00000508604 CIDEAO60543 219 aa2.68□□□□□ -1.98
NUP54-208ENST00000508604 IGHV4-39P01824 125 aa2.68□□□□□ -1.98
NUP54-208ENST00000508604 MMP2P08253 660 aa2.68□□□□□ -1.98
NUP54-208ENST00000508604 G6PDP11413 515 aa2.68□□□□□ -1.98
NUP54-208ENST00000508604 ETFAP13804 333 aa2.68□□□□□ -1.98
NUP54-208ENST00000508604 CST5P28325 142 aaPredicted RBP2.68□□□□□ -1.98
NUP54-208ENST00000508604 DCTP40126 519 aa2.68□□□□□ -1.98
NUP54-208ENST00000508604 NEK3P51956 506 aa2.68□□□□□ -1.98
NUP54-208ENST00000508604 HNRNPH2P55795 449 aaKnown RBP2.68□□□□□ -1.98
NUP54-208ENST00000508604 GALNT1Q10472 559 aaPredicted RBP2.68□□□□□ -1.98
NUP54-208ENST00000508604 ZNF234Q14588 700 aa2.68□□□□□ -1.98
NUP54-208ENST00000508604 CCDC96Q2M329 555 aa2.68□□□□□ -1.98
NUP54-208ENST00000508604 TMEM35AQ53FP2 167 aa2.68□□□□□ -1.98
NUP54-208ENST00000508604 WDR38Q5JTN6 314 aa2.68□□□□□ -1.98
NUP54-208ENST00000508604 TANGO2Q6ICL3 276 aa2.68□□□□□ -1.98
NUP54-208ENST00000508604 RAB40AQ8WXH6 277 aa2.68□□□□□ -1.98
NUP54-208ENST00000508604 SLC32A1Q9H598 525 aa2.68□□□□□ -1.98
NUP54-208ENST00000508604 SAYSD1Q9NPB0 183 aa2.68□□□□□ -1.98
NUP54-208ENST00000508604 TTC7AQ9ULT0 858 aaPredicted RBP2.68□□□□□ -1.98
NUP54-208ENST00000508604 DLGAP4Q9Y2H0 992 aa2.68□□□□□ -1.98
NUP54-208ENST00000508604 SH2D7A6NKC9 451 aaPredicted RBP2.67□□□□□ -1.98
NUP54-208ENST00000508604 ZNHIT1O43257 154 aa2.67□□□□□ -1.98
NUP54-208ENST00000508604 PRKNO60260 465 aaPredicted RBP2.67□□□□□ -1.98
NUP54-208ENST00000508604 CAND2O75155 1236 aa2.67□□□□□ -1.98
NUP54-208ENST00000508604 SORBS2O94875 1100 aaKnown RBP2.67□□□□□ -1.98
NUP54-208ENST00000508604 KRT18P05783 430 aaKnown RBP2.67□□□□□ -1.98
NUP54-208ENST00000508604 GNB3P16520 340 aa2.67□□□□□ -1.98
NUP54-208ENST00000508604 ZNF26P17031 533 aaPredicted RBP2.67□□□□□ -1.98
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms