RNA–Protein interactions for RNA: ENST00000494780.1

COL27A1-208, Transcript of collagen type XXVII alpha 1 chain, humanhuman

TSL 4

Gene COL27A1, Length 514 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL27A1-208ENST00000494780 PELI3Q8N2H9 469 aa23.27■■□□□ 1.32
COL27A1-208ENST00000494780 KIAA1524Q8TCG1 905 aa23.27■■□□□ 1.32
COL27A1-208ENST00000494780 NUS1Q96E22 293 aa23.27■■□□□ 1.32
COL27A1-208ENST00000494780 NUDCD1Q96RS6 583 aa23.27■■□□□ 1.32
COL27A1-208ENST00000494780 BPIFA3Q9BQP9 254 aa23.27■■□□□ 1.32
COL27A1-208ENST00000494780 SEMA4CQ9C0C4 833 aa23.27■■□□□ 1.32
COL27A1-208ENST00000494780 PISDQ9UG56 409 aa23.27■■□□□ 1.32
COL27A1-208ENST00000494780 A0A1W2PQC6 194 aa23.26■■□□□ 1.31
COL27A1-208ENST00000494780 NVLO15381 856 aaKnown RBP23.26■■□□□ 1.31
COL27A1-208ENST00000494780 PEX11BO96011 259 aa23.26■■□□□ 1.31
COL27A1-208ENST00000494780 VIPR1P32241 457 aa23.26■■□□□ 1.31
COL27A1-208ENST00000494780 KLHL30Q0D2K2 578 aa23.26■■□□□ 1.31
COL27A1-208ENST00000494780 CNGA3Q16281 694 aa23.26■■□□□ 1.31
COL27A1-208ENST00000494780 BOLA3Q53S33 107 aa23.26■■□□□ 1.31
COL27A1-208ENST00000494780 E4F1Q66K89 784 aaPredicted RBP23.26■■□□□ 1.31
COL27A1-208ENST00000494780 SFTPA2Q8IWL1 248 aa23.26■■□□□ 1.31
COL27A1-208ENST00000494780 BBS5Q8N3I7 341 aa23.26■■□□□ 1.31
COL27A1-208ENST00000494780 CCL4L1Q8NHW4 92 aa23.26■■□□□ 1.31
COL27A1-208ENST00000494780 MED8Q96G25 268 aa23.26■■□□□ 1.31
COL27A1-208ENST00000494780 PHPT1Q9NRX4 125 aaPredicted RBP23.26■■□□□ 1.31
COL27A1-208ENST00000494780 PCDHGC4Q9Y5F7 938 aa23.26■■□□□ 1.31
COL27A1-208ENST00000494780 TTC24A2A3L6 582 aaPredicted RBP23.25■■□□□ 1.31
COL27A1-208ENST00000494780 SMTNL1A8MU46 457 aa23.25■■□□□ 1.31
COL27A1-208ENST00000494780 HEXIM1O94992 359 aaKnown RBP23.25■■□□□ 1.31
COL27A1-208ENST00000494780 CPP00450 1065 aa23.25■■□□□ 1.31
COL27A1-208ENST00000494780 CYP2A6P11509 494 aaPredicted RBP23.25■■□□□ 1.31
COL27A1-208ENST00000494780 IL1R2P27930 398 aa23.25■■□□□ 1.31
COL27A1-208ENST00000494780 ANO6Q4KMQ2 910 aa23.25■■□□□ 1.31
COL27A1-208ENST00000494780 RALGPS1Q5JS13 557 aa23.25■■□□□ 1.31
COL27A1-208ENST00000494780 TMCO3Q6UWJ1 677 aa23.25■■□□□ 1.31
COL27A1-208ENST00000494780 POLNQ7Z5Q5 900 aa23.25■■□□□ 1.31
COL27A1-208ENST00000494780 CBARPQ8N350 705 aaPredicted RBP23.25■■□□□ 1.31
COL27A1-208ENST00000494780 GPBAR1Q8TDU6 330 aa23.25■■□□□ 1.31
COL27A1-208ENST00000494780 PDCD6IPQ8WUM4 868 aaKnown RBP23.25■■□□□ 1.31
COL27A1-208ENST00000494780 MGME1Q9BQP7 344 aa23.25■■□□□ 1.31
COL27A1-208ENST00000494780 TEX101Q9BY14 249 aa23.25■■□□□ 1.31
COL27A1-208ENST00000494780 MYO1AQ9UBC5 1043 aa23.25■■□□□ 1.31
COL27A1-208ENST00000494780 PHTF1Q9UMS5 762 aa23.25■■□□□ 1.31
COL27A1-208ENST00000494780 UNC13CQ8NB66 2214 aa23.25■■□□□ 1.31
COL27A1-208ENST00000494780 J3QKU1 62 aa23.24■■□□□ 1.31
COL27A1-208ENST00000494780 PSMD11O00231 422 aa23.24■■□□□ 1.31
COL27A1-208ENST00000494780 CCNB1P14635 433 aa23.24■■□□□ 1.31
COL27A1-208ENST00000494780 AMPD1P23109 780 aa23.24■■□□□ 1.31
COL27A1-208ENST00000494780 HEATR4Q86WZ0 1026 aa23.24■■□□□ 1.31
COL27A1-208ENST00000494780 C17orf82Q86X59 251 aaPredicted RBP23.24■■□□□ 1.31
COL27A1-208ENST00000494780 PGBD5Q8N414 524 aa23.24■■□□□ 1.31
COL27A1-208ENST00000494780 DTD2Q96FN9 168 aa23.24■■□□□ 1.31
COL27A1-208ENST00000494780 CMKLR1Q99788 373 aa23.24■■□□□ 1.31
COL27A1-208ENST00000494780 GSDMCQ9BYG8 508 aa23.24■■□□□ 1.31
COL27A1-208ENST00000494780 ISCUQ9H1K1 167 aa23.24■■□□□ 1.31
COL27A1-208ENST00000494780 CARS2Q9HA77 564 aaKnown RBP23.24■■□□□ 1.31
COL27A1-208ENST00000494780 ETNK2Q9NVF9 386 aa23.24■■□□□ 1.31
COL27A1-208ENST00000494780 WDR70Q9NW82 654 aa23.24■■□□□ 1.31
COL27A1-208ENST00000494780 TRNAU1APQ9NX07 287 aaKnown RBP23.24■■□□□ 1.31
COL27A1-208ENST00000494780 ATMQ13315 3056 aa23.24■■□□□ 1.31
COL27A1-208ENST00000494780 SCN8AQ9UQD0 1980 aa23.23■■□□□ 1.31
COL27A1-208ENST00000494780 B8ZZF3 427 aa23.23■■□□□ 1.31
COL27A1-208ENST00000494780 EFSO43281 561 aa23.23■■□□□ 1.31
COL27A1-208ENST00000494780 MAFKO60675 156 aa23.23■■□□□ 1.31
COL27A1-208ENST00000494780 CEACAM5P06731 702 aa23.23■■□□□ 1.31
COL27A1-208ENST00000494780 LIPCP11150 499 aa23.23■■□□□ 1.31
COL27A1-208ENST00000494780 TEAD1P28347 426 aa23.23■■□□□ 1.31
COL27A1-208ENST00000494780 B4GALNT1Q00973 533 aa23.23■■□□□ 1.31
COL27A1-208ENST00000494780 ILF3Q12906 894 aaKnown RBP eCLIP23.23■■□□□ 1.31
COL27A1-208ENST00000494780 SMTNL2Q2TAL5 461 aa23.23■■□□□ 1.31
COL27A1-208ENST00000494780 NRROSQ86YC3 692 aa23.23■■□□□ 1.31
COL27A1-208ENST00000494780 SLITRK4Q8IW52 837 aa23.23■■□□□ 1.31
COL27A1-208ENST00000494780 NSMCE1Q8WV22 266 aa23.23■■□□□ 1.31
COL27A1-208ENST00000494780 CSPG4P5Q96PW8 444 aa23.23■■□□□ 1.31
COL27A1-208ENST00000494780 FRMD8Q9BZ67 464 aaPredicted RBP23.23■■□□□ 1.31
COL27A1-208ENST00000494780 NOD2Q9HC29 1040 aa23.23■■□□□ 1.31
COL27A1-208ENST00000494780 STAU2Q9NUL3 570 aaKnown RBP eCLIP23.23■■□□□ 1.31
COL27A1-208ENST00000494780 SPATS2LQ9NUQ6 558 aaKnown RBP23.23■■□□□ 1.31
COL27A1-208ENST00000494780 AHCTF1Q8WYP5 2266 aa23.22■■□□□ 1.31
COL27A1-208ENST00000494780 ITIH1P19827 911 aa23.22■■□□□ 1.31
COL27A1-208ENST00000494780 ETV3P41162 512 aa23.22■■□□□ 1.31
COL27A1-208ENST00000494780 CDH6P55285 790 aa23.22■■□□□ 1.31
COL27A1-208ENST00000494780 TRAF2Q12933 501 aa23.22■■□□□ 1.31
COL27A1-208ENST00000494780 PIGHQ14442 188 aaPredicted RBP23.22■■□□□ 1.31
COL27A1-208ENST00000494780 TGIF1Q15583 401 aa23.22■■□□□ 1.31
COL27A1-208ENST00000494780 DENND2CQ68D51 928 aa23.22■■□□□ 1.31
COL27A1-208ENST00000494780 ATPAF2Q8N5M1 289 aa23.22■■□□□ 1.31
COL27A1-208ENST00000494780 HSPH1Q92598 858 aa23.22■■□□□ 1.31
COL27A1-208ENST00000494780 SCRN2Q96FV2 425 aa23.22■■□□□ 1.31
COL27A1-208ENST00000494780 SEPT10Q9P0V9 454 aa23.22■■□□□ 1.31
COL27A1-208ENST00000494780 A0A1B0GTH6 734 aa23.21■■□□□ 1.31
COL27A1-208ENST00000494780 ZW10O43264 779 aa23.21■■□□□ 1.31
COL27A1-208ENST00000494780 PGLSO95336 258 aa23.21■■□□□ 1.31
COL27A1-208ENST00000494780 CPNE6O95741 557 aa23.21■■□□□ 1.31
COL27A1-208ENST00000494780 FGF1P05230 155 aa23.21■■□□□ 1.31
COL27A1-208ENST00000494780 RARAP10276 462 aa23.21■■□□□ 1.31
COL27A1-208ENST00000494780 SKILP12757 684 aa23.21■■□□□ 1.31
COL27A1-208ENST00000494780 TCF4P15884 667 aa23.21■■□□□ 1.31
COL27A1-208ENST00000494780 LHCGRP22888 699 aa23.21■■□□□ 1.31
COL27A1-208ENST00000494780 SERPINB6P35237 376 aa23.21■■□□□ 1.31
COL27A1-208ENST00000494780 MMP13P45452 471 aa23.21■■□□□ 1.31
COL27A1-208ENST00000494780 CDK3Q00526 305 aa23.21■■□□□ 1.31
COL27A1-208ENST00000494780 NR1D2Q14995 579 aa23.21■■□□□ 1.31
COL27A1-208ENST00000494780 CLPPQ16740 277 aaPredicted RBP23.21■■□□□ 1.31
COL27A1-208ENST00000494780 MAP9Q49MG5 647 aa23.21■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms