RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 CASP2P42575 452 aa16.56■□□□□ 0.24
CCDC88B-210ENST00000494566 STT3AP46977 705 aa16.56■□□□□ 0.24
CCDC88B-210ENST00000494566 KCNC1P48547 511 aa16.56■□□□□ 0.24
CCDC88B-210ENST00000494566 PSME3P61289 254 aa16.56■□□□□ 0.24
CCDC88B-210ENST00000494566 NSUN2Q08J23 767 aaKnown RBP eCLIP16.56■□□□□ 0.24
CCDC88B-210ENST00000494566 CAPRIN1Q14444 709 aaKnown RBP16.56■□□□□ 0.24
CCDC88B-210ENST00000494566 SIRPB2Q5JXA9 342 aa16.56■□□□□ 0.24
CCDC88B-210ENST00000494566 GPR158Q5T848 1215 aa16.56■□□□□ 0.24
CCDC88B-210ENST00000494566 CHST15Q7LFX5 561 aaPredicted RBP16.56■□□□□ 0.24
CCDC88B-210ENST00000494566 ZNF683Q8IZ20 524 aa16.56■□□□□ 0.24
CCDC88B-210ENST00000494566 FAM193BQ96PV7 902 aaPredicted RBP16.56■□□□□ 0.24
CCDC88B-210ENST00000494566 EFCAB1Q9HAE3 211 aa16.56■□□□□ 0.24
CCDC88B-210ENST00000494566 EPS15L1Q9UBC2 864 aa16.56■□□□□ 0.24
CCDC88B-210ENST00000494566 MID2Q9UJV3 735 aa16.56■□□□□ 0.24
CCDC88B-210ENST00000494566 ZNF189O75820 626 aaPredicted RBP16.56■□□□□ 0.24
CCDC88B-210ENST00000494566 HADHAP40939 763 aa16.56■□□□□ 0.24
CCDC88B-210ENST00000494566 PLOD1Q02809 727 aaPredicted RBP16.56■□□□□ 0.24
CCDC88B-210ENST00000494566 RDH11Q8TC12 318 aa16.56■□□□□ 0.24
CCDC88B-210ENST00000494566 EXOC2Q96KP1 924 aa16.56■□□□□ 0.24
CCDC88B-210ENST00000494566 TBATAQ96M53 351 aa16.56■□□□□ 0.24
CCDC88B-210ENST00000494566 ALG9Q9H6U8 611 aa16.56■□□□□ 0.24
CCDC88B-210ENST00000494566 PRDM5Q9NQX1 630 aaPredicted RBP16.56■□□□□ 0.24
CCDC88B-210ENST00000494566 ARHGEF37A1IGU5 675 aa16.56■□□□□ 0.24
CCDC88B-210ENST00000494566 PRORSD1PA6NEY8 169 aa16.56■□□□□ 0.24
CCDC88B-210ENST00000494566 SCAMP3O14828 347 aaKnown RBP16.56■□□□□ 0.24
CCDC88B-210ENST00000494566 AKAP10O43572 662 aa16.56■□□□□ 0.24
CCDC88B-210ENST00000494566 H2AFYO75367 372 aaKnown RBP16.56■□□□□ 0.24
CCDC88B-210ENST00000494566 TFPTP0C1Z6 253 aa16.56■□□□□ 0.24
CCDC88B-210ENST00000494566 PSMC3P17980 439 aa16.56■□□□□ 0.24
CCDC88B-210ENST00000494566 RENBPP51606 427 aa16.56■□□□□ 0.24
CCDC88B-210ENST00000494566 KCNQ1P51787 676 aa16.56■□□□□ 0.24
CCDC88B-210ENST00000494566 PLA2G4EQ3MJ16 856 aa16.56■□□□□ 0.24
CCDC88B-210ENST00000494566 HABP4Q5JVS0 413 aaKnown RBP16.56■□□□□ 0.24
CCDC88B-210ENST00000494566 KRT80Q6KB66 452 aa16.56■□□□□ 0.24
CCDC88B-210ENST00000494566 B3GNT6Q6ZMB0 384 aa16.56■□□□□ 0.24
CCDC88B-210ENST00000494566 BEND5Q7L4P6 421 aa16.56■□□□□ 0.24
CCDC88B-210ENST00000494566 TET1Q8NFU7 2136 aa16.56■□□□□ 0.24
CCDC88B-210ENST00000494566 OR52K2Q8NGK3 314 aa16.56■□□□□ 0.24
CCDC88B-210ENST00000494566 ZBTB26Q9HCK0 441 aa16.56■□□□□ 0.24
CCDC88B-210ENST00000494566 MARCH2Q9P0N8 246 aa16.56■□□□□ 0.24
CCDC88B-210ENST00000494566 HEATR9A2RTY3 570 aa16.55■□□□□ 0.24
CCDC88B-210ENST00000494566 A8MT66 165 aa16.55■□□□□ 0.24
CCDC88B-210ENST00000494566 GPC4O75487 556 aa16.55■□□□□ 0.24
CCDC88B-210ENST00000494566 PLIN5Q00G26 463 aa16.55■□□□□ 0.24
CCDC88B-210ENST00000494566 DSC1Q08554 894 aa16.55■□□□□ 0.24
CCDC88B-210ENST00000494566 HECTD2Q5U5R9 776 aa16.55■□□□□ 0.24
CCDC88B-210ENST00000494566 DCP1BQ8IZD4 617 aaKnown RBP16.55■□□□□ 0.24
CCDC88B-210ENST00000494566 NAT16Q8N8M0 369 aa16.55■□□□□ 0.24
CCDC88B-210ENST00000494566 OR13C4Q8NGS5 318 aa16.55■□□□□ 0.24
CCDC88B-210ENST00000494566 RP9Q8TA86 221 aaKnown RBP16.55■□□□□ 0.24
CCDC88B-210ENST00000494566 SEMA3CQ99985 751 aa16.55■□□□□ 0.24
CCDC88B-210ENST00000494566 RGS18Q9NS28 235 aa16.55■□□□□ 0.24
CCDC88B-210ENST00000494566 LMCD1Q9NZU5 365 aa16.55■□□□□ 0.24
CCDC88B-210ENST00000494566 C6orf203Q9P0P8 240 aaPredicted RBP16.55■□□□□ 0.24
CCDC88B-210ENST00000494566 RNF11Q9Y3C5 154 aa16.55■□□□□ 0.24
CCDC88B-210ENST00000494566 A0A0D9SEW6 157 aa16.55■□□□□ 0.24
CCDC88B-210ENST00000494566 CA12O43570 354 aa16.55■□□□□ 0.24
CCDC88B-210ENST00000494566 OR1E1P30953 314 aa16.55■□□□□ 0.24
CCDC88B-210ENST00000494566 GRIA3P42263 894 aa16.55■□□□□ 0.24
CCDC88B-210ENST00000494566 ACLYP53396 1101 aa16.55■□□□□ 0.24
CCDC88B-210ENST00000494566 POLD3Q15054 466 aaPredicted RBP16.55■□□□□ 0.24
CCDC88B-210ENST00000494566 TECRLQ5HYJ1 363 aa16.55■□□□□ 0.24
CCDC88B-210ENST00000494566 SLC24A5Q71RS6 500 aa16.55■□□□□ 0.24
CCDC88B-210ENST00000494566 HERC6Q8IVU3 1022 aa16.55■□□□□ 0.24
CCDC88B-210ENST00000494566 UMODL1-AS1Q8N2C9 162 aa16.55■□□□□ 0.24
CCDC88B-210ENST00000494566 MRPL57Q9BQC6 102 aaKnown RBP16.55■□□□□ 0.24
CCDC88B-210ENST00000494566 Q9H521 79 aa16.55■□□□□ 0.24
CCDC88B-210ENST00000494566 PCDHB5Q9Y5E4 795 aa16.55■□□□□ 0.24
CCDC88B-210ENST00000494566 FNDC1Q4ZHG4 1894 aaPredicted RBP16.55■□□□□ 0.24
CCDC88B-210ENST00000494566 A0A0U1RQS6 177 aa16.54■□□□□ 0.24
CCDC88B-210ENST00000494566 SDHDO14521 159 aa16.54■□□□□ 0.24
CCDC88B-210ENST00000494566 CASQ2O14958 399 aaPredicted RBP16.54■□□□□ 0.24
CCDC88B-210ENST00000494566 OAZ2O95190 189 aa16.54■□□□□ 0.24
CCDC88B-210ENST00000494566 DNAJB2P25686 324 aa16.54■□□□□ 0.24
CCDC88B-210ENST00000494566 SULT2A1Q06520 285 aa16.54■□□□□ 0.24
CCDC88B-210ENST00000494566 FASTKQ14296 549 aaKnown RBP16.54■□□□□ 0.24
CCDC88B-210ENST00000494566 RNF19BQ6ZMZ0 732 aa16.54■□□□□ 0.24
CCDC88B-210ENST00000494566 TMEM173Q86WV6 379 aaPredicted RBP16.54■□□□□ 0.24
CCDC88B-210ENST00000494566 DCBLD1Q8N8Z6 715 aa16.54■□□□□ 0.24
CCDC88B-210ENST00000494566 HMGCLL1Q8TB92 370 aa16.54■□□□□ 0.24
CCDC88B-210ENST00000494566 CYP2S1Q96SQ9 504 aa16.54■□□□□ 0.24
CCDC88B-210ENST00000494566 NCKIPSDQ9NZQ3 722 aa16.54■□□□□ 0.24
CCDC88B-210ENST00000494566 AP4S1Q9Y587 144 aa16.54■□□□□ 0.24
CCDC88B-210ENST00000494566 SUPT3HO75486 399 aa16.54■□□□□ 0.24
CCDC88B-210ENST00000494566 RHOQP17081 205 aa16.54■□□□□ 0.24
CCDC88B-210ENST00000494566 DUSP4Q13115 394 aa16.54■□□□□ 0.24
CCDC88B-210ENST00000494566 SCIMPQ6UWF3 145 aa16.54■□□□□ 0.24
CCDC88B-210ENST00000494566 CILP2Q8IUL8 1156 aa16.54■□□□□ 0.24
CCDC88B-210ENST00000494566 OFCC1Q8IZS5 231 aa16.54■□□□□ 0.24
CCDC88B-210ENST00000494566 MARVELD2Q8N4S9 558 aa16.54■□□□□ 0.24
CCDC88B-210ENST00000494566 ARRDC2Q8TBH0 407 aa16.54■□□□□ 0.24
CCDC88B-210ENST00000494566 ATXN10Q9UBB4 475 aa16.54■□□□□ 0.24
CCDC88B-210ENST00000494566 GREB1Q4ZG55 1949 aa16.54■□□□□ 0.24
CCDC88B-210ENST00000494566 RAMP2O60895 175 aa16.53■□□□□ 0.24
CCDC88B-210ENST00000494566 TNFAIP8O95379 198 aa16.53■□□□□ 0.24
CCDC88B-210ENST00000494566 YAP1P46937 504 aaKnown RBP16.53■□□□□ 0.24
CCDC88B-210ENST00000494566 SLC7A2P52569 658 aa16.53■□□□□ 0.24
CCDC88B-210ENST00000494566 POU4F1Q01851 419 aa16.53■□□□□ 0.24
CCDC88B-210ENST00000494566 SEMA3AQ14563 771 aa16.53■□□□□ 0.24
CCDC88B-210ENST00000494566 PTPRRQ15256 657 aa16.53■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms