RNA–Protein interactions for RNA: ENST00000493265.2

LIME1-208, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS ALT2 TSL 2

Gene LIME1, Length 661 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-208ENST00000493265 LIG3P49916 1009 aa17.22■□□□□ 0.35
LIME1-208ENST00000493265 SUOXP51687 545 aa17.22■□□□□ 0.35
LIME1-208ENST00000493265 SRSF5Q13243 272 aaKnown RBP17.22■□□□□ 0.35
LIME1-208ENST00000493265 MAP7D1Q3KQU3 841 aa17.22■□□□□ 0.35
LIME1-208ENST00000493265 HP1BP3Q5SSJ5 553 aaPredicted RBP17.22■□□□□ 0.35
LIME1-208ENST00000493265 FNBP1LQ5T0N5 605 aa17.22■□□□□ 0.35
LIME1-208ENST00000493265 LRRC66Q68CR7 880 aa17.22■□□□□ 0.35
LIME1-208ENST00000493265 LAIR1Q6GTX8 287 aa17.22■□□□□ 0.35
LIME1-208ENST00000493265 GLT6D1Q7Z4J2 308 aa17.22■□□□□ 0.35
LIME1-208ENST00000493265 CAND1Q86VP6 1230 aaKnown RBP17.22■□□□□ 0.35
LIME1-208ENST00000493265 LONP2Q86WA8 852 aa17.22■□□□□ 0.35
LIME1-208ENST00000493265 SPOCK2Q92563 424 aa17.22■□□□□ 0.35
LIME1-208ENST00000493265 UBXN4Q92575 508 aa17.22■□□□□ 0.35
LIME1-208ENST00000493265 SERPINB12Q96P63 405 aa17.22■□□□□ 0.35
LIME1-208ENST00000493265 MCCC1Q96RQ3 725 aaPredicted RBP17.22■□□□□ 0.35
LIME1-208ENST00000493265 RTKNQ9BST9 563 aa17.22■□□□□ 0.35
LIME1-208ENST00000493265 SGK2Q9HBY8 427 aa17.22■□□□□ 0.35
LIME1-208ENST00000493265 ARNT2Q9HBZ2 717 aa17.22■□□□□ 0.35
LIME1-208ENST00000493265 XAB2Q9HCS7 855 aaKnown RBP17.22■□□□□ 0.35
LIME1-208ENST00000493265 BFARQ9NZS9 450 aa17.22■□□□□ 0.35
LIME1-208ENST00000493265 COQ6Q9Y2Z9 468 aa17.22■□□□□ 0.35
LIME1-208ENST00000493265 PPIL1Q9Y3C6 166 aa17.22■□□□□ 0.35
LIME1-208ENST00000493265 A0A1W2PQU0 124 aa17.21■□□□□ 0.35
LIME1-208ENST00000493265 TSPAN6O43657 245 aa17.21■□□□□ 0.35
LIME1-208ENST00000493265 ELFN1P0C7U0 828 aa17.21■□□□□ 0.35
LIME1-208ENST00000493265 C7P10643 843 aa17.21■□□□□ 0.35
LIME1-208ENST00000493265 HOXA6P31267 233 aa17.21■□□□□ 0.35
LIME1-208ENST00000493265 CARSP49589 748 aaKnown RBP17.21■□□□□ 0.35
LIME1-208ENST00000493265 RALGDSQ12967 914 aa17.21■□□□□ 0.35
LIME1-208ENST00000493265 ACOX1Q15067 660 aa17.21■□□□□ 0.35
LIME1-208ENST00000493265 CNGA3Q16281 694 aa17.21■□□□□ 0.35
LIME1-208ENST00000493265 BBS9Q3SYG4 887 aa17.21■□□□□ 0.35
LIME1-208ENST00000493265 TMEM52BQ4KMG9 183 aa17.21■□□□□ 0.35
LIME1-208ENST00000493265 SEL1L3Q68CR1 1132 aa17.21■□□□□ 0.35
LIME1-208ENST00000493265 CASC4Q6P4E1 433 aa17.21■□□□□ 0.35
LIME1-208ENST00000493265 ZDHHC24Q6UX98 284 aa17.21■□□□□ 0.35
LIME1-208ENST00000493265 WDR5BQ86VZ2 330 aa17.21■□□□□ 0.35
LIME1-208ENST00000493265 CCDC25Q86WR0 208 aa17.21■□□□□ 0.35
LIME1-208ENST00000493265 IFT20Q8IY31 132 aa17.21■□□□□ 0.35
LIME1-208ENST00000493265 OR2T34Q8NGX1 318 aa17.21■□□□□ 0.35
LIME1-208ENST00000493265 FBXO25Q8TCJ0 367 aa17.21■□□□□ 0.35
LIME1-208ENST00000493265 ART4Q93070 314 aa17.21■□□□□ 0.35
LIME1-208ENST00000493265 C6orf106Q9H6K1 298 aaPredicted RBP17.21■□□□□ 0.35
LIME1-208ENST00000493265 MAGEE1Q9HCI5 957 aa17.21■□□□□ 0.35
LIME1-208ENST00000493265 SYBUQ9NX95 663 aa17.21■□□□□ 0.35
LIME1-208ENST00000493265 WSB2Q9NYS7 404 aaPredicted RBP17.21■□□□□ 0.35
LIME1-208ENST00000493265 MBD1Q9UIS9 605 aaPredicted RBP17.21■□□□□ 0.35
LIME1-208ENST00000493265 FNDC3AQ9Y2H6 1198 aaKnown RBP17.21■□□□□ 0.35
LIME1-208ENST00000493265 KCTD3Q9Y597 815 aa17.21■□□□□ 0.35
LIME1-208ENST00000493265 ARL5AQ9Y689 179 aa17.21■□□□□ 0.35
LIME1-208ENST00000493265 ACACBO00763 2458 aa17.21■□□□□ 0.34
LIME1-208ENST00000493265 IGLON5A6NGN9 336 aa17.2■□□□□ 0.34
LIME1-208ENST00000493265 TP73O15350 636 aa17.2■□□□□ 0.34
LIME1-208ENST00000493265 AP1G1O43747 822 aa17.2■□□□□ 0.34
LIME1-208ENST00000493265 LZTS3O60299 673 aaPredicted RBP17.2■□□□□ 0.34
LIME1-208ENST00000493265 KRT37O76014 449 aa17.2■□□□□ 0.34
LIME1-208ENST00000493265 FSBPO95073 299 aa17.2■□□□□ 0.34
LIME1-208ENST00000493265 IGLV3-19P01714 112 aa17.2■□□□□ 0.34
LIME1-208ENST00000493265 BCKDHBP21953 392 aa17.2■□□□□ 0.34
LIME1-208ENST00000493265 NPY2RP49146 381 aa17.2■□□□□ 0.34
LIME1-208ENST00000493265 DRG2P55039 364 aaKnown RBP17.2■□□□□ 0.34
LIME1-208ENST00000493265 ARL4CP56559 192 aa17.2■□□□□ 0.34
LIME1-208ENST00000493265 PPP2CBP62714 309 aa17.2■□□□□ 0.34
LIME1-208ENST00000493265 PPP2CAP67775 309 aa17.2■□□□□ 0.34
LIME1-208ENST00000493265 RPL6Q02878 288 aaKnown RBP17.2■□□□□ 0.34
LIME1-208ENST00000493265 CAV1Q03135 178 aa17.2■□□□□ 0.34
LIME1-208ENST00000493265 SIM2Q14190 667 aaPredicted RBP17.2■□□□□ 0.34
LIME1-208ENST00000493265 PTPRCAPQ14761 206 aa17.2■□□□□ 0.34
LIME1-208ENST00000493265 HIF1AQ16665 826 aa17.2■□□□□ 0.34
LIME1-208ENST00000493265 ERCC6LQ2NKX8 1250 aa17.2■□□□□ 0.34
LIME1-208ENST00000493265 LIPIQ6XZB0 460 aa17.2■□□□□ 0.34
LIME1-208ENST00000493265 HSD11B1LQ7Z5J1 315 aa17.2■□□□□ 0.34
LIME1-208ENST00000493265 MPP5Q8N3R9 675 aa17.2■□□□□ 0.34
LIME1-208ENST00000493265 SEC14L1Q92503 715 aa17.2■□□□□ 0.34
LIME1-208ENST00000493265 SNX19Q92543 992 aa17.2■□□□□ 0.34
LIME1-208ENST00000493265 FAM131CQ96AQ9 280 aa17.2■□□□□ 0.34
LIME1-208ENST00000493265 ZFYVE1Q9HBF4 777 aa17.2■□□□□ 0.34
LIME1-208ENST00000493265 PREBQ9HCU5 417 aa17.2■□□□□ 0.34
LIME1-208ENST00000493265 BPIFA1Q9NP55 256 aa17.2■□□□□ 0.34
LIME1-208ENST00000493265 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP17.2■□□□□ 0.34
LIME1-208ENST00000493265 HACD3Q9P035 362 aa17.2■□□□□ 0.34
LIME1-208ENST00000493265 MAD1L1Q9Y6D9 718 aa17.2■□□□□ 0.34
LIME1-208ENST00000493265 MYLKQ15746 1914 aa17.19■□□□□ 0.34
LIME1-208ENST00000493265 KMT2BQ9UMN6 2715 aaPredicted RBP17.19■□□□□ 0.34
LIME1-208ENST00000493265 CCDC163A0A0D9SF12 145 aa17.19■□□□□ 0.34
LIME1-208ENST00000493265 BHMG1C9JSJ3 638 aaPredicted RBP17.19■□□□□ 0.34
LIME1-208ENST00000493265 SMAPO00193 183 aa17.19■□□□□ 0.34
LIME1-208ENST00000493265 AP3B1O00203 1094 aa17.19■□□□□ 0.34
LIME1-208ENST00000493265 RPP40O75818 363 aaKnown RBP17.19■□□□□ 0.34
LIME1-208ENST00000493265 RETP07949 1114 aa17.19■□□□□ 0.34
LIME1-208ENST00000493265 C1SP09871 688 aa17.19■□□□□ 0.34
LIME1-208ENST00000493265 MLNP12872 115 aa17.19■□□□□ 0.34
LIME1-208ENST00000493265 C6P13671 934 aa17.19■□□□□ 0.34
LIME1-208ENST00000493265 TUBB4BP68371 445 aa17.19■□□□□ 0.34
LIME1-208ENST00000493265 TMPRSS15P98073 1019 aa17.19■□□□□ 0.34
LIME1-208ENST00000493265 DHX9Q08211 1270 aaKnown RBP17.19■□□□□ 0.34
LIME1-208ENST00000493265 MSS51Q4VC12 460 aa17.19■□□□□ 0.34
LIME1-208ENST00000493265 DNAJC21Q5F1R6 531 aaKnown RBP17.19■□□□□ 0.34
LIME1-208ENST00000493265 RFLNAQ6ZTI6 216 aa17.19■□□□□ 0.34
LIME1-208ENST00000493265 PDIK1LQ8N165 341 aa17.19■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms