RNA–Protein interactions for RNA: ENST00000487188.1

VPS13D-209, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 3,990 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-209ENST00000487188 HS6ST1O60243 411 aa6.25□□□□□ -1.41
VPS13D-209ENST00000487188 ARSAP15289 507 aa6.25□□□□□ -1.41
VPS13D-209ENST00000487188 JUNBP17275 347 aaPredicted RBP6.25□□□□□ -1.41
VPS13D-209ENST00000487188 CASP3P42574 277 aa6.25□□□□□ -1.41
VPS13D-209ENST00000487188 NSUN2Q08J23 767 aaKnown RBP eCLIP6.25□□□□□ -1.41
VPS13D-209ENST00000487188 OLIG2Q13516 323 aa6.25□□□□□ -1.41
VPS13D-209ENST00000487188 AQP6Q13520 282 aa6.25□□□□□ -1.41
VPS13D-209ENST00000487188 PSMD5Q16401 504 aa6.25□□□□□ -1.41
VPS13D-209ENST00000487188 MEP1AQ16819 746 aa6.25□□□□□ -1.41
VPS13D-209ENST00000487188 HSDL1Q3SXM5 330 aa6.25□□□□□ -1.41
VPS13D-209ENST00000487188 SPRED1Q7Z699 444 aa6.25□□□□□ -1.41
VPS13D-209ENST00000487188 RAB44Q7Z6P3 723 aaPredicted RBP6.25□□□□□ -1.41
VPS13D-209ENST00000487188 PIGZQ86VD9 579 aa6.25□□□□□ -1.41
VPS13D-209ENST00000487188 DCP2Q8IU60 420 aaKnown RBP6.25□□□□□ -1.41
VPS13D-209ENST00000487188 ADGRG5Q8IZF4 528 aa6.25□□□□□ -1.41
VPS13D-209ENST00000487188 SPARTQ8N0X7 666 aa6.25□□□□□ -1.41
VPS13D-209ENST00000487188 SVOPQ8N4V2 548 aa6.25□□□□□ -1.41
VPS13D-209ENST00000487188 KDM1BQ8NB78 822 aa6.25□□□□□ -1.41
VPS13D-209ENST00000487188 ZNF280CQ8ND82 737 aa6.25□□□□□ -1.41
VPS13D-209ENST00000487188 NDNFQ8TB73 568 aa6.25□□□□□ -1.41
VPS13D-209ENST00000487188 SPPL2BQ8TCT7 592 aa6.25□□□□□ -1.41
VPS13D-209ENST00000487188 SYTL5Q8TDW5 730 aaPredicted RBP6.25□□□□□ -1.41
VPS13D-209ENST00000487188 CCDC126Q96EE4 140 aa6.25□□□□□ -1.41
VPS13D-209ENST00000487188 DUS3LQ96G46 650 aaKnown RBP6.25□□□□□ -1.41
VPS13D-209ENST00000487188 P2RY11Q96G91 374 aa6.25□□□□□ -1.41
VPS13D-209ENST00000487188 MYRFLQ96LU7 910 aa6.25□□□□□ -1.41
VPS13D-209ENST00000487188 ZNF560Q96MR9 790 aa6.25□□□□□ -1.41
VPS13D-209ENST00000487188 RHOJQ9H4E5 214 aa6.25□□□□□ -1.41
VPS13D-209ENST00000487188 ZNF385DQ9H6B1 395 aa6.25□□□□□ -1.41
VPS13D-209ENST00000487188 EPS8L2Q9H6S3 715 aa6.25□□□□□ -1.41
VPS13D-209ENST00000487188 SP140LQ9H930 580 aa6.25□□□□□ -1.41
VPS13D-209ENST00000487188 JPH1Q9HDC5 661 aaPredicted RBP6.25□□□□□ -1.41
VPS13D-209ENST00000487188 EIF2B3Q9NR50 452 aaKnown RBP6.25□□□□□ -1.41
VPS13D-209ENST00000487188 SNTG2Q9NY99 539 aa6.25□□□□□ -1.41
VPS13D-209ENST00000487188 RABL2BQ9UNT1 228 aa6.25□□□□□ -1.41
VPS13D-209ENST00000487188 SOAT2O75908 522 aa6.25□□□□□ -1.41
VPS13D-209ENST00000487188 INMTO95050 263 aa6.25□□□□□ -1.41
VPS13D-209ENST00000487188 MED26O95402 600 aa6.25□□□□□ -1.41
VPS13D-209ENST00000487188 CAPN1P07384 714 aa6.25□□□□□ -1.41
VPS13D-209ENST00000487188 YBX3P16989 372 aaKnown RBP eCLIP6.25□□□□□ -1.414e-10■□□□□ 10.4
VPS13D-209ENST00000487188 PRKACBP22694 351 aa6.25□□□□□ -1.41
VPS13D-209ENST00000487188 YWHAQP27348 245 aa6.25□□□□□ -1.41
VPS13D-209ENST00000487188 HTR1BP28222 390 aa6.25□□□□□ -1.41
VPS13D-209ENST00000487188 SHMT2P34897 504 aa6.25□□□□□ -1.41
VPS13D-209ENST00000487188 GRK3P35626 688 aa6.25□□□□□ -1.41
VPS13D-209ENST00000487188 ALDH7A1P49419 539 aaKnown RBP6.25□□□□□ -1.41
VPS13D-209ENST00000487188 EPS8Q12929 822 aa6.25□□□□□ -1.41
VPS13D-209ENST00000487188 LRIT3Q3SXY7 679 aa6.25□□□□□ -1.41
VPS13D-209ENST00000487188 FAM98BQ52LJ0 330 aaKnown RBP6.25□□□□□ -1.41
VPS13D-209ENST00000487188 ZNF544Q6NX49 715 aa6.25□□□□□ -1.41
VPS13D-209ENST00000487188 CNSTQ6PJW8 725 aa6.25□□□□□ -1.41
VPS13D-209ENST00000487188 GALNT12Q8IXK2 581 aa6.25□□□□□ -1.41
VPS13D-209ENST00000487188 STYXQ8WUJ0 223 aa6.25□□□□□ -1.41
VPS13D-209ENST00000487188 RASSF5Q8WWW0 418 aa6.25□□□□□ -1.41
VPS13D-209ENST00000487188 MASTLQ96GX5 879 aa6.25□□□□□ -1.41
VPS13D-209ENST00000487188 ZNF341Q9BYN7 854 aa6.25□□□□□ -1.41
VPS13D-209ENST00000487188 TRIM8Q9BZR9 551 aa6.25□□□□□ -1.41
VPS13D-209ENST00000487188 ALG2Q9H553 416 aa6.25□□□□□ -1.41
VPS13D-209ENST00000487188 CCDC177Q9NQR7 707 aaPredicted RBP6.25□□□□□ -1.41
VPS13D-209ENST00000487188 THG1LQ9NWX6 298 aaKnown RBP6.25□□□□□ -1.41
VPS13D-209ENST00000487188 DTLQ9NZJ0 730 aa6.25□□□□□ -1.41
VPS13D-209ENST00000487188 CD300AQ9UGN4 299 aa6.25□□□□□ -1.41
VPS13D-209ENST00000487188 TSPAN16Q9UKR8 245 aa6.25□□□□□ -1.41
VPS13D-209ENST00000487188 DSEQ9UL01 958 aa6.25□□□□□ -1.41
VPS13D-209ENST00000487188 WBP11Q9Y2W2 641 aaKnown RBP6.25□□□□□ -1.41
VPS13D-209ENST00000487188 SPEF1Q9Y4P9 236 aa6.25□□□□□ -1.41
VPS13D-209ENST00000487188 CNTNAP4Q9C0A0 1308 aa6.25□□□□□ -1.41
VPS13D-209ENST00000487188 SMCHD1A6NHR9 2005 aa6.25□□□□□ -1.41
VPS13D-209ENST00000487188 ISPDA4D126 451 aa6.25□□□□□ -1.41
VPS13D-209ENST00000487188 INO80B-WBP1J3KQ70 363 aa6.25□□□□□ -1.41
VPS13D-209ENST00000487188 TEX28O15482 410 aa6.25□□□□□ -1.41
VPS13D-209ENST00000487188 NTRK1P04629 796 aa6.25□□□□□ -1.41
VPS13D-209ENST00000487188 ICAM1P05362 532 aa6.25□□□□□ -1.41
VPS13D-209ENST00000487188 PRKCBP05771 671 aa6.25□□□□□ -1.41
VPS13D-209ENST00000487188 DBTP11182 482 aaKnown RBP6.25□□□□□ -1.41
VPS13D-209ENST00000487188 GOT1P17174 413 aa6.25□□□□□ -1.41
VPS13D-209ENST00000487188 GRM5P41594 1212 aa6.25□□□□□ -1.41
VPS13D-209ENST00000487188 ASPAP45381 313 aa6.25□□□□□ -1.41
VPS13D-209ENST00000487188 PPP5CP53041 499 aa6.25□□□□□ -1.41
VPS13D-209ENST00000487188 RAB10P61026 200 aa6.25□□□□□ -1.41
VPS13D-209ENST00000487188 LIPEQ05469 1076 aa6.25□□□□□ -1.41
VPS13D-209ENST00000487188 PGM5Q15124 567 aa6.25□□□□□ -1.41
VPS13D-209ENST00000487188 CERCAMQ5T4B2 595 aa6.25□□□□□ -1.41
VPS13D-209ENST00000487188 CLEC6AQ6EIG7 209 aa6.25□□□□□ -1.41
VPS13D-209ENST00000487188 LCN8Q6JVE9 175 aa6.25□□□□□ -1.41
VPS13D-209ENST00000487188 PRR5LQ6MZQ0 368 aa6.25□□□□□ -1.41
VPS13D-209ENST00000487188 TFAP2DQ7Z6R9 452 aa6.25□□□□□ -1.41
VPS13D-209ENST00000487188 FAM131BQ86XD5 332 aa6.25□□□□□ -1.41
VPS13D-209ENST00000487188 ELMOD2Q8IZ81 293 aa6.25□□□□□ -1.41
VPS13D-209ENST00000487188 TTC39CQ8N584 583 aa6.25□□□□□ -1.41
VPS13D-209ENST00000487188 C7orf31Q8N865 590 aa6.25□□□□□ -1.41
VPS13D-209ENST00000487188 ATL1Q8WXF7 558 aa6.25□□□□□ -1.41
VPS13D-209ENST00000487188 HDAC2Q92769 488 aaKnown RBP6.25□□□□□ -1.41
VPS13D-209ENST00000487188 NCLNQ969V3 563 aa6.25□□□□□ -1.41
VPS13D-209ENST00000487188 ZNF668Q96K58 619 aaPredicted RBP6.25□□□□□ -1.41
VPS13D-209ENST00000487188 FCRL3Q96P31 734 aaPredicted RBP6.25□□□□□ -1.41
VPS13D-209ENST00000487188 CSPG4P5Q96PW8 444 aa6.25□□□□□ -1.41
VPS13D-209ENST00000487188 MRPL57Q9BQC6 102 aaKnown RBP6.25□□□□□ -1.41
VPS13D-209ENST00000487188 TMEM246Q9BRR3 403 aa6.25□□□□□ -1.41
VPS13D-209ENST00000487188 FTHL17Q9BXU8 183 aa6.25□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms