RNA–Protein interactions for RNA: ENST00000487043.5

PTCD3-216, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 1,054 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-216ENST00000487043 MMABQ96EY8 250 aaPredicted RBP4.2□□□□□ -1.74
PTCD3-216ENST00000487043 P2RY11Q96G91 374 aa4.2□□□□□ -1.74
PTCD3-216ENST00000487043 RADILQ96JH8 1075 aa4.2□□□□□ -1.74
PTCD3-216ENST00000487043 RITA1Q96K30 269 aa4.2□□□□□ -1.74
PTCD3-216ENST00000487043 FRG2BQ96QU4 278 aa4.2□□□□□ -1.74
PTCD3-216ENST00000487043 STRA6Q9BX79 667 aa4.2□□□□□ -1.74
PTCD3-216ENST00000487043 HIPK3Q9H422 1215 aa4.2□□□□□ -1.74
PTCD3-216ENST00000487043 PDE7BQ9NP56 450 aa4.2□□□□□ -1.74
PTCD3-216ENST00000487043 ZBTB40Q9NUA8 1239 aa4.2□□□□□ -1.74
PTCD3-216ENST00000487043 ASB6Q9NWX5 421 aa4.2□□□□□ -1.74
PTCD3-216ENST00000487043 FBXO40Q9UH90 709 aa4.2□□□□□ -1.74
PTCD3-216ENST00000487043 DDX52Q9Y2R4 599 aaKnown RBP eCLIP4.2□□□□□ -1.74
PTCD3-216ENST00000487043 MAGED1Q9Y5V3 778 aaPredicted RBP4.2□□□□□ -1.74
PTCD3-216ENST00000487043 DOT1LQ8TEK3 1739 aa4.2□□□□□ -1.74
PTCD3-216ENST00000487043 PAPPAQ13219 1627 aa4.2□□□□□ -1.74
PTCD3-216ENST00000487043 RGS12O14924 1447 aa4.2□□□□□ -1.74
PTCD3-216ENST00000487043 PASKQ96RG2 1323 aa4.2□□□□□ -1.74
PTCD3-216ENST00000487043 A0A1W2PQF6 199 aa4.19□□□□□ -1.74
PTCD3-216ENST00000487043 SLC22A23A1A5C7 686 aa4.19□□□□□ -1.74
PTCD3-216ENST00000487043 INPPL1O15357 1258 aa4.19□□□□□ -1.74
PTCD3-216ENST00000487043 DKC1O60832 514 aaKnown RBP eCLIP4.19□□□□□ -1.741e-323■■□□□ 12
PTCD3-216ENST00000487043 OR2C1O95371 312 aa4.19□□□□□ -1.74
PTCD3-216ENST00000487043 PLAUP00749 431 aa4.19□□□□□ -1.74
PTCD3-216ENST00000487043 APOA4P06727 396 aa4.19□□□□□ -1.74
PTCD3-216ENST00000487043 CHRM5P08912 532 aaPredicted RBP4.19□□□□□ -1.74
PTCD3-216ENST00000487043 CYP19A1P11511 503 aaPredicted RBP4.19□□□□□ -1.74
PTCD3-216ENST00000487043 MYL6BP14649 208 aa4.19□□□□□ -1.74
PTCD3-216ENST00000487043 IL11P20809 199 aa4.19□□□□□ -1.74
PTCD3-216ENST00000487043 HOXA7P31268 230 aaPredicted RBP4.19□□□□□ -1.74
PTCD3-216ENST00000487043 UBA7P41226 1012 aa4.19□□□□□ -1.74
PTCD3-216ENST00000487043 PIP4K2AP48426 406 aaPredicted RBP4.19□□□□□ -1.74
PTCD3-216ENST00000487043 TERF1P54274 439 aa4.19□□□□□ -1.74
PTCD3-216ENST00000487043 NIPAL4Q0D2K0 466 aa4.19□□□□□ -1.74
PTCD3-216ENST00000487043 AIMP1Q12904 312 aaKnown RBP4.19□□□□□ -1.74
PTCD3-216ENST00000487043 CSTF3Q12996 717 aaKnown RBP4.19□□□□□ -1.74
PTCD3-216ENST00000487043 RUNX2Q13950 521 aa4.19□□□□□ -1.74
PTCD3-216ENST00000487043 RASA2Q15283 850 aa4.19□□□□□ -1.74
PTCD3-216ENST00000487043 RNPS1Q15287 305 aaKnown RBP4.19□□□□□ -1.74
PTCD3-216ENST00000487043 COL28A1Q2UY09 1125 aa4.19□□□□□ -1.74
PTCD3-216ENST00000487043 KRTAP15-1Q3LI76 137 aa4.19□□□□□ -1.74
PTCD3-216ENST00000487043 BMP2KLQ5H9B9 411 aa4.19□□□□□ -1.74
PTCD3-216ENST00000487043 RAB41Q5JT25 222 aa4.19□□□□□ -1.74
PTCD3-216ENST00000487043 KIAA1755Q5JYT7 1200 aa4.19□□□□□ -1.74
PTCD3-216ENST00000487043 PLEKHS1Q5SXH7 462 aa4.19□□□□□ -1.74
PTCD3-216ENST00000487043 BEND3Q5T5X7 828 aa4.19□□□□□ -1.74
PTCD3-216ENST00000487043 TXNDC8Q6A555 127 aa4.19□□□□□ -1.74
PTCD3-216ENST00000487043 NAA16Q6N069 864 aaPredicted RBP4.19□□□□□ -1.74
PTCD3-216ENST00000487043 CPLX2Q6PUV4 134 aaKnown RBP4.19□□□□□ -1.74
PTCD3-216ENST00000487043 CYB5R4Q7L1T6 521 aa4.19□□□□□ -1.74
PTCD3-216ENST00000487043 WDR5BQ86VZ2 330 aa4.19□□□□□ -1.74
PTCD3-216ENST00000487043 LURAP1LQ8IV03 231 aa4.19□□□□□ -1.74
PTCD3-216ENST00000487043 SCML4Q8N228 414 aa4.19□□□□□ -1.74
PTCD3-216ENST00000487043 GABPB2Q8TAK5 448 aaPredicted RBP4.19□□□□□ -1.74
PTCD3-216ENST00000487043 DNAAF4Q8WXU2 420 aa4.19□□□□□ -1.74
PTCD3-216ENST00000487043 ATOH1Q92858 354 aaPredicted RBP4.19□□□□□ -1.74
PTCD3-216ENST00000487043 C1orf74Q96LT6 269 aa4.19□□□□□ -1.74
PTCD3-216ENST00000487043 ZMAT2Q96NC0 199 aaKnown RBP4.19□□□□□ -1.74
PTCD3-216ENST00000487043 BBS4Q96RK4 519 aa4.19□□□□□ -1.74
PTCD3-216ENST00000487043 BAG1Q99933 345 aaPredicted RBP4.19□□□□□ -1.74
PTCD3-216ENST00000487043 SIL1Q9H173 461 aa4.19□□□□□ -1.74
PTCD3-216ENST00000487043 RWDD1Q9H446 243 aaPredicted RBP4.19□□□□□ -1.74
PTCD3-216ENST00000487043 KIF9Q9HAQ2 790 aa4.19□□□□□ -1.74
PTCD3-216ENST00000487043 ZCCHC17Q9NP64 241 aaKnown RBP4.19□□□□□ -1.74
PTCD3-216ENST00000487043 SLC6A13Q9NSD5 602 aa4.19□□□□□ -1.74
PTCD3-216ENST00000487043 DLGAP2Q9P1A6 1054 aa4.19□□□□□ -1.74
PTCD3-216ENST00000487043 SUCLA2Q9P2R7 463 aaPredicted RBP4.19□□□□□ -1.74
PTCD3-216ENST00000487043 SLC17A6Q9P2U8 582 aa4.19□□□□□ -1.74
PTCD3-216ENST00000487043 GIMAP2Q9UG22 337 aa4.19□□□□□ -1.74
PTCD3-216ENST00000487043 SERGEFQ9UGK8 458 aa4.19□□□□□ -1.74
PTCD3-216ENST00000487043 MTMR6Q9Y217 621 aa4.19□□□□□ -1.74
PTCD3-216ENST00000487043 SESN1Q9Y6P5 492 aa4.19□□□□□ -1.74
PTCD3-216ENST00000487043 C5P01031 1676 aa4.19□□□□□ -1.74
PTCD3-216ENST00000487043 ADCY9O60503 1353 aa4.18□□□□□ -1.74
PTCD3-216ENST00000487043 PALLDQ8WX93 1383 aa4.18□□□□□ -1.74
PTCD3-216ENST00000487043 LAMB4A4D0S4 1761 aa4.18□□□□□ -1.74
PTCD3-216ENST00000487043 DDTLA6NHG4 134 aaPredicted RBP4.18□□□□□ -1.74
PTCD3-216ENST00000487043 FAM157AC9JC47 383 aa4.18□□□□□ -1.74
PTCD3-216ENST00000487043 USP17L23D6RBM5 183 aa4.18□□□□□ -1.74
PTCD3-216ENST00000487043 NPIPB11E5RHQ5 1161 aa4.18□□□□□ -1.74
PTCD3-216ENST00000487043 RAMP2O60895 175 aa4.18□□□□□ -1.74
PTCD3-216ENST00000487043 RNF8O76064 485 aa4.18□□□□□ -1.74
PTCD3-216ENST00000487043 RB1P06400 928 aa4.18□□□□□ -1.74
PTCD3-216ENST00000487043 NHLRC4P0CG21 123 aaPredicted RBP4.18□□□□□ -1.74
PTCD3-216ENST00000487043 NR2F1P10589 423 aa4.18□□□□□ -1.74
PTCD3-216ENST00000487043 CYP2A6P11509 494 aaPredicted RBP4.18□□□□□ -1.74
PTCD3-216ENST00000487043 IL7RP16871 459 aa4.18□□□□□ -1.74
PTCD3-216ENST00000487043 HMGB2P26583 209 aaKnown RBP4.18□□□□□ -1.74
PTCD3-216ENST00000487043 F2RL1P55085 397 aa4.18□□□□□ -1.74
PTCD3-216ENST00000487043 CLDN2P57739 230 aa4.18□□□□□ -1.74
PTCD3-216ENST00000487043 PRPF4BQ13523 1007 aaKnown RBP4.18□□□□□ -1.74
PTCD3-216ENST00000487043 HIST2H2ACQ16777 129 aaPredicted RBP4.18□□□□□ -1.74
PTCD3-216ENST00000487043 TMEM266Q2M3C6 531 aa4.18□□□□□ -1.74
PTCD3-216ENST00000487043 ALG11Q2TAA5 492 aa4.18□□□□□ -1.74
PTCD3-216ENST00000487043 SYTL3Q4VX76 610 aa4.18□□□□□ -1.74
PTCD3-216ENST00000487043 RPUSD3Q6P087 351 aaKnown RBP4.18□□□□□ -1.74
PTCD3-216ENST00000487043 LRIG3Q6UXM1 1119 aa4.18□□□□□ -1.74
PTCD3-216ENST00000487043 PTF1AQ7RTS3 328 aa4.18□□□□□ -1.74
PTCD3-216ENST00000487043 KRT74Q7RTS7 529 aa4.18□□□□□ -1.74
PTCD3-216ENST00000487043 PRPF39Q86UA1 669 aaKnown RBP4.18□□□□□ -1.74
PTCD3-216ENST00000487043 DHX40Q8IX18 779 aaKnown RBP4.18□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms