RNA–Protein interactions for RNA: ENST00000485842.5

HPS4-214, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 3

Gene HPS4, Length 973 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-214ENST00000485842 GDF3Q9NR23 364 aa11.86□□□□□ -0.51
HPS4-214ENST00000485842 MBNL1Q9NR56 388 aaKnown RBP11.86□□□□□ -0.51
HPS4-214ENST00000485842 KCND1Q9NSA2 647 aa11.86□□□□□ -0.51
HPS4-214ENST00000485842 HS3ST3A1Q9Y663 406 aa11.86□□□□□ -0.51
HPS4-214ENST00000485842 GOLGA6CA6NDK9 693 aa11.85□□□□□ -0.51
HPS4-214ENST00000485842 GOLGA6BA6NDN3 693 aa11.85□□□□□ -0.51
HPS4-214ENST00000485842 C4orf47A7E2U8 309 aa11.85□□□□□ -0.51
HPS4-214ENST00000485842 PSMD11O00231 422 aa11.85□□□□□ -0.51
HPS4-214ENST00000485842 MAGEC1O60732 1142 aa11.85□□□□□ -0.51
HPS4-214ENST00000485842 METTL18O95568 372 aa11.85□□□□□ -0.51
HPS4-214ENST00000485842 AGTP01019 485 aa11.85□□□□□ -0.51
HPS4-214ENST00000485842 ATXN1LP0C7T5 689 aaKnown RBP11.85□□□□□ -0.51
HPS4-214ENST00000485842 GOLGA6DP0CG33 693 aa11.85□□□□□ -0.51
HPS4-214ENST00000485842 ETS1P14921 441 aa11.85□□□□□ -0.51
HPS4-214ENST00000485842 ZNF30P17039 623 aa11.85□□□□□ -0.51
HPS4-214ENST00000485842 GM2AP17900 193 aa11.85□□□□□ -0.51
HPS4-214ENST00000485842 STIP1P31948 543 aaKnown RBP11.85□□□□□ -0.51
HPS4-214ENST00000485842 STC1P52823 247 aa11.85□□□□□ -0.51
HPS4-214ENST00000485842 ARHGAP8P85298 464 aa11.85□□□□□ -0.51
HPS4-214ENST00000485842 OVGP1Q12889 678 aa11.85□□□□□ -0.51
HPS4-214ENST00000485842 SPARCL1Q14515 664 aa11.85□□□□□ -0.51
HPS4-214ENST00000485842 PARP6Q2NL67 630 aa11.85□□□□□ -0.51
HPS4-214ENST00000485842 HLA-BQ31612 363 aa11.85□□□□□ -0.51
HPS4-214ENST00000485842 SIRPB2Q5JXA9 342 aa11.85□□□□□ -0.51
HPS4-214ENST00000485842 PRAMEF14Q5SWL7 426 aa11.85□□□□□ -0.51
HPS4-214ENST00000485842 DRICH1Q6PGQ1 229 aaPredicted RBP11.85□□□□□ -0.51
HPS4-214ENST00000485842 IL27RAQ6UWB1 636 aa11.85□□□□□ -0.51
HPS4-214ENST00000485842 Q6ZSR6 202 aa11.85□□□□□ -0.51
HPS4-214ENST00000485842 Q6ZVL8 140 aa11.85□□□□□ -0.51
HPS4-214ENST00000485842 ABI3BPQ7Z7G0 1075 aa11.85□□□□□ -0.51
HPS4-214ENST00000485842 IQCHQ86VS3 1027 aa11.85□□□□□ -0.51
HPS4-214ENST00000485842 GLIS1Q8NBF1 620 aa11.85□□□□□ -0.51
HPS4-214ENST00000485842 NETO1Q8TDF5 533 aa11.85□□□□□ -0.51
HPS4-214ENST00000485842 ACTRT1Q8TDG2 376 aa11.85□□□□□ -0.51
HPS4-214ENST00000485842 CENPTQ96BT3 561 aa11.85□□□□□ -0.51
HPS4-214ENST00000485842 TRIM44Q96DX7 344 aaPredicted RBP11.85□□□□□ -0.51
HPS4-214ENST00000485842 RTP4Q96DX8 246 aa11.85□□□□□ -0.51
HPS4-214ENST00000485842 DTD2Q96FN9 168 aa11.85□□□□□ -0.51
HPS4-214ENST00000485842 BMFQ96LC9 184 aa11.85□□□□□ -0.51
HPS4-214ENST00000485842 PPP1R2P1Q96PQ5 205 aa11.85□□□□□ -0.51
HPS4-214ENST00000485842 TBL1YQ9BQ87 522 aa11.85□□□□□ -0.51
HPS4-214ENST00000485842 GPR63Q9BZJ6 419 aa11.85□□□□□ -0.51
HPS4-214ENST00000485842 GAREM1Q9H706 876 aa11.85□□□□□ -0.51
HPS4-214ENST00000485842 IL21RQ9HBE5 538 aa11.85□□□□□ -0.51
HPS4-214ENST00000485842 HOMER3Q9NSC5 361 aa11.85□□□□□ -0.51
HPS4-214ENST00000485842 GOLGA6AQ9NYA3 693 aa11.85□□□□□ -0.51
HPS4-214ENST00000485842 CD84Q9UIB8 345 aa11.85□□□□□ -0.51
HPS4-214ENST00000485842 CDV3Q9UKY7 258 aaKnown RBP11.85□□□□□ -0.51
HPS4-214ENST00000485842 TTC7AQ9ULT0 858 aaPredicted RBP11.85□□□□□ -0.51
HPS4-214ENST00000485842 SHOC2Q9UQ13 582 aa11.85□□□□□ -0.51
HPS4-214ENST00000485842 FNDC3AQ9Y2H6 1198 aaKnown RBP11.85□□□□□ -0.51
HPS4-214ENST00000485842 AAR2Q9Y312 384 aaKnown RBP11.85□□□□□ -0.51
HPS4-214ENST00000485842 ZNF711Q9Y462 761 aa11.85□□□□□ -0.51
HPS4-214ENST00000485842 SPO11Q9Y5K1 396 aa11.85□□□□□ -0.51
HPS4-214ENST00000485842 GOLGA6L10A0A0M3HER8 536 aa11.84□□□□□ -0.51
HPS4-214ENST00000485842 LOC285095A0A1B0GVY8 99 aa11.84□□□□□ -0.51
HPS4-214ENST00000485842 CES2O00748 559 aa11.84□□□□□ -0.51
HPS4-214ENST00000485842 CDX4O14627 284 aaPredicted RBP11.84□□□□□ -0.51
HPS4-214ENST00000485842 FANCGO15287 622 aa11.84□□□□□ -0.51
HPS4-214ENST00000485842 USP12O75317 370 aa11.84□□□□□ -0.51
HPS4-214ENST00000485842 EPOP01588 193 aa11.84□□□□□ -0.51
HPS4-214ENST00000485842 FGF1P05230 155 aa11.84□□□□□ -0.51
HPS4-214ENST00000485842 HLA-DPA1P20036 260 aa11.84□□□□□ -0.51
HPS4-214ENST00000485842 RABIFP47224 123 aa11.84□□□□□ -0.51
HPS4-214ENST00000485842 THOP1P52888 689 aa11.84□□□□□ -0.51
HPS4-214ENST00000485842 IL9RQ01113 521 aa11.84□□□□□ -0.51
HPS4-214ENST00000485842 PTSQ03393 145 aa11.84□□□□□ -0.51
HPS4-214ENST00000485842 PDE1CQ14123 709 aaPredicted RBP11.84□□□□□ -0.51
HPS4-214ENST00000485842 AGERQ15109 404 aa11.84□□□□□ -0.51
HPS4-214ENST00000485842 SLC1A5Q15758 541 aa11.84□□□□□ -0.51
HPS4-214ENST00000485842 KCTD19Q17RG1 926 aaPredicted RBP11.84□□□□□ -0.51
HPS4-214ENST00000485842 TPRG1LQ5T0D9 272 aa11.84□□□□□ -0.51
HPS4-214ENST00000485842 PAPD7Q5XG87 772 aaKnown RBP11.84□□□□□ -0.51
HPS4-214ENST00000485842 RFLNAQ6ZTI6 216 aa11.84□□□□□ -0.51
HPS4-214ENST00000485842 SPATS2Q86XZ4 545 aaKnown RBP11.84□□□□□ -0.51
HPS4-214ENST00000485842 SLC22A18ASQ8N1D0 253 aa11.84□□□□□ -0.51
HPS4-214ENST00000485842 PLA2G15Q8NCC3 412 aa11.84□□□□□ -0.51
HPS4-214ENST00000485842 FAM174AQ8TBP5 190 aa11.84□□□□□ -0.51
HPS4-214ENST00000485842 CCHCR1Q8TD31 782 aa11.84□□□□□ -0.51
HPS4-214ENST00000485842 BLOC1S5Q8TDH9 187 aa11.84□□□□□ -0.51
HPS4-214ENST00000485842 MAGOHBQ96A72 148 aaKnown RBP11.84□□□□□ -0.51
HPS4-214ENST00000485842 LRRC45Q96CN5 670 aa11.84□□□□□ -0.51
HPS4-214ENST00000485842 LYSMD1Q96S90 227 aa11.84□□□□□ -0.51
HPS4-214ENST00000485842 DRG1Q9Y295 367 aaKnown RBP11.84□□□□□ -0.51
HPS4-214ENST00000485842 SAR1BQ9Y6B6 198 aa11.84□□□□□ -0.51
HPS4-214ENST00000485842 KNL1Q8NG31 2342 aa11.84□□□□□ -0.51
HPS4-214ENST00000485842 USP34Q70CQ2 3546 aa11.83□□□□□ -0.51
HPS4-214ENST00000485842 E7EVH7 732 aa11.83□□□□□ -0.52
HPS4-214ENST00000485842 K7ESM1 405 aa11.83□□□□□ -0.52
HPS4-214ENST00000485842 ZSCAN5DPP0CG00 497 aa11.83□□□□□ -0.52
HPS4-214ENST00000485842 CASQ1P31415 396 aa11.83□□□□□ -0.52
HPS4-214ENST00000485842 RPL22P35268 128 aaKnown RBP11.83□□□□□ -0.52
HPS4-214ENST00000485842 FDFT1P37268 417 aa11.83□□□□□ -0.52
HPS4-214ENST00000485842 LMAN1P49257 510 aa11.83□□□□□ -0.52
HPS4-214ENST00000485842 CCT8P50990 548 aa11.83□□□□□ -0.52
HPS4-214ENST00000485842 PFN3P60673 137 aa11.83□□□□□ -0.52
HPS4-214ENST00000485842 MTM1Q13496 603 aa11.83□□□□□ -0.52
HPS4-214ENST00000485842 INPP5AQ14642 412 aa11.83□□□□□ -0.52
HPS4-214ENST00000485842 TRIP13Q15645 432 aaPredicted RBP11.83□□□□□ -0.52
HPS4-214ENST00000485842 CDKN3Q16667 212 aa11.83□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms