RNA–Protein interactions for RNA: ENST00000485792.1

CUX1-208, Transcript of cut like homeobox 1, human

TSL 5

Gene CUX1, Length 564 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CUX1-208	ENST00000485792	MFSD7	Q6UXD7	560 aa		5.76	□□□□□ -1.49
CUX1-208	ENST00000485792	SRL	Q86TD4	932 aa		5.76	□□□□□ -1.49
CUX1-208	ENST00000485792	MAP7D3	Q8IWC1	876 aa		5.76	□□□□□ -1.49
CUX1-208	ENST00000485792	RHOT1	Q8IXI2	618 aa		5.76	□□□□□ -1.49
CUX1-208	ENST00000485792	KLHDC8B	Q8IXV7	354 aa		5.76	□□□□□ -1.49
CUX1-208	ENST00000485792	VWA5B2	Q8N398	1253 aa		5.76	□□□□□ -1.49
CUX1-208	ENST00000485792	MINDY1	Q8N5J2	469 aa		5.76	□□□□□ -1.49
CUX1-208	ENST00000485792	C12orf50	Q8NA57	414 aa	Predicted RBP	5.76	□□□□□ -1.49
CUX1-208	ENST00000485792	DENND6B	Q8NEG7	585 aa		5.76	□□□□□ -1.49
CUX1-208	ENST00000485792	EXD1	Q8NHP7	514 aa		5.76	□□□□□ -1.49
CUX1-208	ENST00000485792	ARRDC2	Q8TBH0	407 aa		5.76	□□□□□ -1.49
CUX1-208	ENST00000485792	SAP25	Q8TEE9	199 aa		5.76	□□□□□ -1.49
CUX1-208	ENST00000485792	PIH1D2	Q8WWB5	315 aa		5.76	□□□□□ -1.49
CUX1-208	ENST00000485792	EID2B	Q96D98	161 aa		5.76	□□□□□ -1.49
CUX1-208	ENST00000485792	PPP1R16A	Q96I34	528 aa		5.76	□□□□□ -1.49
CUX1-208	ENST00000485792	KLHL32	Q96NJ5	620 aa		5.76	□□□□□ -1.49
CUX1-208	ENST00000485792	LYSMD1	Q96S90	227 aa		5.76	□□□□□ -1.49
CUX1-208	ENST00000485792	BAG1	Q99933	345 aa	Predicted RBP	5.76	□□□□□ -1.49
CUX1-208	ENST00000485792	MYOC	Q99972	504 aa		5.76	□□□□□ -1.49
CUX1-208	ENST00000485792	SLC17A9	Q9BYT1	436 aa		5.76	□□□□□ -1.49
CUX1-208	ENST00000485792	CEP41	Q9BYV8	373 aa		5.76	□□□□□ -1.49
CUX1-208	ENST00000485792	TCEAL2	Q9H3H9	227 aa	Predicted RBP	5.76	□□□□□ -1.49
CUX1-208	ENST00000485792	DEF6	Q9H4E7	631 aa		5.76	□□□□□ -1.49
CUX1-208	ENST00000485792	MBNL1	Q9NR56	388 aa	Known RBP	5.76	□□□□□ -1.49
CUX1-208	ENST00000485792	DDX56	Q9NY93	547 aa	Known RBP	5.76	□□□□□ -1.49
CUX1-208	ENST00000485792	PACSIN2	Q9UNF0	486 aa	Predicted RBP	5.76	□□□□□ -1.49
CUX1-208	ENST00000485792	COQ6	Q9Y2Z9	468 aa		5.76	□□□□□ -1.49
CUX1-208	ENST00000485792	SNX11	Q9Y5W9	270 aa		5.76	□□□□□ -1.49
CUX1-208	ENST00000485792	HEATR5B	Q9P2D3	2071 aa		5.76	□□□□□ -1.49
CUX1-208	ENST00000485792	URB1	O60287	2271 aa	Known RBP	5.76	□□□□□ -1.49
CUX1-208	ENST00000485792	TBC1D3D	A0A087WVF3	549 aa		5.75	□□□□□ -1.49
CUX1-208	ENST00000485792	TBC1D3I	A0A087WXS9	549 aa		5.75	□□□□□ -1.49
CUX1-208	ENST00000485792	TBC1D3E	A0A087X179	549 aa		5.75	□□□□□ -1.49
CUX1-208	ENST00000485792	TBC1D3K	A0A087X1G2	549 aa		5.75	□□□□□ -1.49
CUX1-208	ENST00000485792	SPTY2D1-AS1	A0A0U1RR47	76 aa		5.75	□□□□□ -1.49
CUX1-208	ENST00000485792	LOC107983988	A0A1B0GUW6	1196 aa	Predicted RBP	5.75	□□□□□ -1.49
CUX1-208	ENST00000485792		A0A1W2PQ67	120 aa		5.75	□□□□□ -1.49
CUX1-208	ENST00000485792		A0A1W2PQU0	124 aa		5.75	□□□□□ -1.49
CUX1-208	ENST00000485792	TBC1D3F	A6NER0	549 aa	Predicted RBP	5.75	□□□□□ -1.49
CUX1-208	ENST00000485792	POM121B	A6NF01	834 aa		5.75	□□□□□ -1.49
CUX1-208	ENST00000485792	MEI4	A8MW99	385 aa		5.75	□□□□□ -1.49
CUX1-208	ENST00000485792	TBC1D3L	B9A6J9	549 aa		5.75	□□□□□ -1.49
CUX1-208	ENST00000485792		K7ESM1	405 aa		5.75	□□□□□ -1.49
CUX1-208	ENST00000485792	TLR4	O00206	839 aa		5.75	□□□□□ -1.49
CUX1-208	ENST00000485792	KRIT1	O00522	736 aa		5.75	□□□□□ -1.49
CUX1-208	ENST00000485792	DAPK3	O43293	454 aa		5.75	□□□□□ -1.49
CUX1-208	ENST00000485792	BNIP3L	O60238	219 aa		5.75	□□□□□ -1.49
CUX1-208	ENST00000485792	PALM	O75781	387 aa		5.75	□□□□□ -1.49
CUX1-208	ENST00000485792	FSBP	O95073	299 aa		5.75	□□□□□ -1.49
CUX1-208	ENST00000485792	CAPNS1	P04632	268 aa		5.75	□□□□□ -1.49
CUX1-208	ENST00000485792	UGT2B4	P06133	528 aa		5.75	□□□□□ -1.49
CUX1-208	ENST00000485792	PDHA1	P08559	390 aa		5.75	□□□□□ -1.49
CUX1-208	ENST00000485792	ADRB1	P08588	477 aa		5.75	□□□□□ -1.49
CUX1-208	ENST00000485792	HOXC4	P09017	264 aa	Predicted RBP	5.75	□□□□□ -1.49
CUX1-208	ENST00000485792	TBC1D3H	P0C7X1	549 aa		5.75	□□□□□ -1.49
CUX1-208	ENST00000485792	KRT10	P13645	584 aa		5.75	□□□□□ -1.49
CUX1-208	ENST00000485792	SPINK2	P20155	84 aa		5.75	□□□□□ -1.49
CUX1-208	ENST00000485792	HNRNPA2B1	P22626	353 aa	Known RBP	5.75	□□□□□ -1.49
CUX1-208	ENST00000485792	CTNNA2	P26232	953 aa		5.75	□□□□□ -1.49
CUX1-208	ENST00000485792	PML	P29590	882 aa		5.75	□□□□□ -1.49
CUX1-208	ENST00000485792	MAT2A	P31153	395 aa	Known RBP	5.75	□□□□□ -1.49
CUX1-208	ENST00000485792	CD68	P34810	354 aa	Predicted RBP	5.75	□□□□□ -1.49
CUX1-208	ENST00000485792	CTNNA1	P35221	906 aa	Known RBP	5.75	□□□□□ -1.49
CUX1-208	ENST00000485792	NR2C2	P49116	596 aa		5.75	□□□□□ -1.49
CUX1-208	ENST00000485792	IL9R	Q01113	521 aa		5.75	□□□□□ -1.49
CUX1-208	ENST00000485792	RAD51	Q06609	339 aa		5.75	□□□□□ -1.49
CUX1-208	ENST00000485792	OLIG2	Q13516	323 aa		5.75	□□□□□ -1.49
CUX1-208	ENST00000485792	UBAP2L	Q14157	1087 aa	Known RBP	5.75	□□□□□ -1.49
CUX1-208	ENST00000485792	PRKD1	Q15139	912 aa	Predicted RBP	5.75	□□□□□ -1.49
CUX1-208	ENST00000485792	NOMO1	Q15155	1222 aa		5.75	□□□□□ -1.49
CUX1-208	ENST00000485792	AASDH	Q4L235	1098 aa	Predicted RBP	5.75	□□□□□ -1.49
CUX1-208	ENST00000485792	SETMAR	Q53H47	684 aa	Predicted RBP	5.75	□□□□□ -1.49
CUX1-208	ENST00000485792	TFDP3	Q5H9I0	405 aa		5.75	□□□□□ -1.49
CUX1-208	ENST00000485792	SAMD5	Q5TGI4	173 aa		5.75	□□□□□ -1.49
CUX1-208	ENST00000485792	MARC1	Q5VT66	337 aa		5.75	□□□□□ -1.49
CUX1-208	ENST00000485792	TBC1D3G	Q6DHY5	549 aa		5.75	□□□□□ -1.49
CUX1-208	ENST00000485792	TBC1D3C	Q6IPX1	549 aa		5.75	□□□□□ -1.49
CUX1-208	ENST00000485792	FBXL19	Q6PCT2	694 aa		5.75	□□□□□ -1.49
CUX1-208	ENST00000485792	KYAT3	Q6YP21	454 aa	Known RBP	5.75	□□□□□ -1.49
CUX1-208	ENST00000485792	LRRC69	Q6ZNQ3	347 aa		5.75	□□□□□ -1.49
CUX1-208	ENST00000485792	PRPF39	Q86UA1	669 aa	Known RBP	5.75	□□□□□ -1.49
CUX1-208	ENST00000485792	TSPAN33	Q86UF1	283 aa		5.75	□□□□□ -1.49
CUX1-208	ENST00000485792	NT5DC3	Q86UY8	548 aa		5.75	□□□□□ -1.49
CUX1-208	ENST00000485792	DCP2	Q8IU60	420 aa	Known RBP	5.75	□□□□□ -1.49
CUX1-208	ENST00000485792	CAMK1D	Q8IU85	385 aa		5.75	□□□□□ -1.49
CUX1-208	ENST00000485792	RGL4	Q8IZJ4	473 aa		5.75	□□□□□ -1.49
CUX1-208	ENST00000485792	TBC1D3	Q8IZP1	549 aa	Predicted RBP	5.75	□□□□□ -1.49
CUX1-208	ENST00000485792	RNF10	Q8N5U6	811 aa	Known RBP	5.75	□□□□□ -1.49
CUX1-208	ENST00000485792	TP53I13	Q8NBR0	393 aa	Predicted RBP	5.75	□□□□□ -1.49
CUX1-208	ENST00000485792	SPC24	Q8NBT2	197 aa		5.75	□□□□□ -1.49
CUX1-208	ENST00000485792	KCTD6	Q8NC69	237 aa		5.75	□□□□□ -1.49
CUX1-208	ENST00000485792	PLA2G15	Q8NCC3	412 aa		5.75	□□□□□ -1.49
CUX1-208	ENST00000485792	SCRN2	Q96FV2	425 aa		5.75	□□□□□ -1.49
CUX1-208	ENST00000485792	HES6	Q96HZ4	224 aa		5.75	□□□□□ -1.49
CUX1-208	ENST00000485792	FEM1C	Q96JP0	617 aa		5.75	□□□□□ -1.49
CUX1-208	ENST00000485792	HSH2D	Q96JZ2	352 aa		5.75	□□□□□ -1.49
CUX1-208	ENST00000485792	TRIB3	Q96RU7	358 aa		5.75	□□□□□ -1.49
CUX1-208	ENST00000485792	WDR24	Q96S15	920 aa		5.75	□□□□□ -1.49
CUX1-208	ENST00000485792	LGMN	Q99538	433 aa		5.75	□□□□□ -1.49
CUX1-208	ENST00000485792	ELF4	Q99607	663 aa	Predicted RBP	5.75	□□□□□ -1.49

Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms