RNA–Protein interactions for RNA: ENST00000484954.1

VPS50-216, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 594 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-216ENST00000484954 HMGB1P09429 215 aaKnown RBP3.2□□□□□ -1.9
VPS50-216ENST00000484954 CDH1P12830 882 aa3.2□□□□□ -1.9
VPS50-216ENST00000484954 GPD2P43304 727 aa3.2□□□□□ -1.9
VPS50-216ENST00000484954 GLIPR1P48060 266 aa3.2□□□□□ -1.9
VPS50-216ENST00000484954 ECT2LQ008S8 904 aa3.2□□□□□ -1.9
VPS50-216ENST00000484954 KHDRBS1Q07666 443 aaKnown RBP eCLIP3.2□□□□□ -1.9
VPS50-216ENST00000484954 STXBP5Q5T5C0 1151 aa3.2□□□□□ -1.9
VPS50-216ENST00000484954 TXNDC8Q6A555 127 aa3.2□□□□□ -1.9
VPS50-216ENST00000484954 GDPD4Q6W3E5 623 aa3.2□□□□□ -1.9
VPS50-216ENST00000484954 QSOX2Q6ZRP7 698 aa3.2□□□□□ -1.9
VPS50-216ENST00000484954 KLHDC8BQ8IXV7 354 aa3.2□□□□□ -1.9
VPS50-216ENST00000484954 DSELQ8IZU8 1212 aa3.2□□□□□ -1.9
VPS50-216ENST00000484954 ZCCHC9Q8N567 271 aaKnown RBP3.2□□□□□ -1.9
VPS50-216ENST00000484954 ANKRD42Q8N9B4 389 aa3.2□□□□□ -1.9
VPS50-216ENST00000484954 BEST2Q8NFU1 509 aa3.2□□□□□ -1.9
VPS50-216ENST00000484954 LRRC8CQ8TDW0 803 aa3.2□□□□□ -1.9
VPS50-216ENST00000484954 ABTB1Q969K4 478 aaPredicted RBP3.2□□□□□ -1.9
VPS50-216ENST00000484954 UHRF2Q96PU4 802 aa3.2□□□□□ -1.9
VPS50-216ENST00000484954 HERPUD2Q9BSE4 406 aa3.2□□□□□ -1.9
VPS50-216ENST00000484954 GPR63Q9BZJ6 419 aa3.2□□□□□ -1.9
VPS50-216ENST00000484954 MMP25Q9NPA2 562 aa3.2□□□□□ -1.9
VPS50-216ENST00000484954 KLHL1Q9NR64 748 aa3.2□□□□□ -1.9
VPS50-216ENST00000484954 BEX4Q9NWD9 120 aaPredicted RBP3.2□□□□□ -1.9
VPS50-216ENST00000484954 GGA3Q9NZ52 723 aa3.2□□□□□ -1.9
VPS50-216ENST00000484954 SLC25A10Q9UBX3 287 aaPredicted RBP3.2□□□□□ -1.9
VPS50-216ENST00000484954 CNOT7Q9UIV1 285 aaKnown RBP3.2□□□□□ -1.9
VPS50-216ENST00000484954 FBXO9Q9UK97 447 aaPredicted RBP3.2□□□□□ -1.9
VPS50-216ENST00000484954 FAM96BQ9Y3D0 163 aa3.2□□□□□ -1.9
VPS50-216ENST00000484954 TMEM202A6NGA9 273 aa3.19□□□□□ -1.9
VPS50-216ENST00000484954 SNAP23O00161 211 aa3.19□□□□□ -1.9
VPS50-216ENST00000484954 TIPRLO75663 272 aa3.19□□□□□ -1.9
VPS50-216ENST00000484954 SLC22A3O75751 556 aa3.19□□□□□ -1.9
VPS50-216ENST00000484954 MT-CYBP00156 380 aaPredicted RBP3.19□□□□□ -1.9
VPS50-216ENST00000484954 TFP02787 698 aa3.19□□□□□ -1.9
VPS50-216ENST00000484954 CD58P19256 250 aa3.19□□□□□ -1.9
VPS50-216ENST00000484954 MAOAP21397 527 aa3.19□□□□□ -1.9
VPS50-216ENST00000484954 S1PR1P21453 382 aa3.19□□□□□ -1.9
VPS50-216ENST00000484954 MCM3P25205 808 aa3.19□□□□□ -1.9
VPS50-216ENST00000484954 PSMC2P35998 433 aaKnown RBP3.19□□□□□ -1.9
VPS50-216ENST00000484954 CRIP2P52943 208 aaPredicted RBP3.19□□□□□ -1.9
VPS50-216ENST00000484954 LINC01547P58512 204 aaPredicted RBP3.19□□□□□ -1.9
VPS50-216ENST00000484954 KRTAP10-12P60413 245 aa3.19□□□□□ -1.9
VPS50-216ENST00000484954 SEC61BP60468 96 aaKnown RBP3.19□□□□□ -1.9
VPS50-216ENST00000484954 UFM1P61960 85 aa3.19□□□□□ -1.9
VPS50-216ENST00000484954 PPP2R5BQ15173 497 aa3.19□□□□□ -1.9
VPS50-216ENST00000484954 CTF1Q16619 201 aa3.19□□□□□ -1.9
VPS50-216ENST00000484954 TCTN1Q2MV58 587 aa3.19□□□□□ -1.9
VPS50-216ENST00000484954 SLC9B1Q4ZJI4 515 aa3.19□□□□□ -1.9
VPS50-216ENST00000484954 SLC45A4Q5BKX6 768 aa3.19□□□□□ -1.9
VPS50-216ENST00000484954 RGMBQ6NW40 437 aa3.19□□□□□ -1.9
VPS50-216ENST00000484954 LRRC8DQ7L1W4 858 aa3.19□□□□□ -1.9
VPS50-216ENST00000484954 TAOK1Q7L7X3 1001 aa3.19□□□□□ -1.9
VPS50-216ENST00000484954 WDR63Q8IWG1 891 aa3.19□□□□□ -1.9
VPS50-216ENST00000484954 C11orf65Q8NCR3 313 aa3.19□□□□□ -1.9
VPS50-216ENST00000484954 OR13A1Q8NGR1 328 aa3.19□□□□□ -1.9
VPS50-216ENST00000484954 HUS1BQ8NHY5 278 aa3.19□□□□□ -1.9
VPS50-216ENST00000484954 USP13Q92995 863 aaPredicted RBP3.19□□□□□ -1.9
VPS50-216ENST00000484954 MAELQ96JY0 434 aaKnown RBP3.19□□□□□ -1.9
VPS50-216ENST00000484954 UBXN10Q96LJ8 280 aa3.19□□□□□ -1.9
VPS50-216ENST00000484954 PLEKHA4Q9H4M7 779 aa3.19□□□□□ -1.9
VPS50-216ENST00000484954 FBRSL1Q9HCM7 1045 aaKnown RBP3.19□□□□□ -1.9
VPS50-216ENST00000484954 BPIFA1Q9NP55 256 aa3.19□□□□□ -1.9
VPS50-216ENST00000484954 NOL12Q9UGY1 213 aaKnown RBP eCLIP3.19□□□□□ -1.9
VPS50-216ENST00000484954 TEX13CA0A0J9YWL9 993 aa3.18□□□□□ -1.9
VPS50-216ENST00000484954 C16orf97H3BN30 126 aa3.18□□□□□ -1.9
VPS50-216ENST00000484954 IFRD1O00458 451 aaPredicted RBP3.18□□□□□ -1.9
VPS50-216ENST00000484954 TNPO2O14787 897 aaKnown RBP3.18□□□□□ -1.9
VPS50-216ENST00000484954 FTCDO95954 541 aa3.18□□□□□ -1.9
VPS50-216ENST00000484954 HNRNPA1P09651 372 aaKnown RBP eCLIP3.18□□□□□ -1.9
VPS50-216ENST00000484954 CETPP11597 493 aa3.18□□□□□ -1.9
VPS50-216ENST00000484954 FGF5P12034 268 aa3.18□□□□□ -1.9
VPS50-216ENST00000484954 MYOD1P15172 320 aa3.18□□□□□ -1.9
VPS50-216ENST00000484954 CORO1AP31146 461 aaKnown RBP3.18□□□□□ -1.9
VPS50-216ENST00000484954 TMPOP42166 694 aaKnown RBP3.18□□□□□ -1.9
VPS50-216ENST00000484954 HNRNPH2P55795 449 aaKnown RBP3.18□□□□□ -1.9
VPS50-216ENST00000484954 GALNT2Q10471 571 aa3.18□□□□□ -1.9
VPS50-216ENST00000484954 DMP1Q13316 513 aaPredicted RBP3.18□□□□□ -1.9
VPS50-216ENST00000484954 LINGO2Q7L985 606 aa3.18□□□□□ -1.9
VPS50-216ENST00000484954 HAPLN4Q86UW8 402 aa3.18□□□□□ -1.9
VPS50-216ENST00000484954 EPHX4Q8IUS5 362 aa3.18□□□□□ -1.9
VPS50-216ENST00000484954 C1orf87Q8N0U7 546 aa3.18□□□□□ -1.9
VPS50-216ENST00000484954 SPATA6LQ8N4H0 392 aa3.18□□□□□ -1.9
VPS50-216ENST00000484954 HMGCLL1Q8TB92 370 aa3.18□□□□□ -1.9
VPS50-216ENST00000484954 ALG14Q96F25 216 aa3.18□□□□□ -1.9
VPS50-216ENST00000484954 KLHL15Q96M94 604 aa3.18□□□□□ -1.9
VPS50-216ENST00000484954 CMKLR1Q99788 373 aa3.18□□□□□ -1.9
VPS50-216ENST00000484954 FUZQ9BT04 418 aa3.18□□□□□ -1.9
VPS50-216ENST00000484954 PPP1R3EQ9H7J1 279 aa3.18□□□□□ -1.9
VPS50-216ENST00000484954 PCDH9Q9HC56 1237 aa3.18□□□□□ -1.9
VPS50-216ENST00000484954 GPR108Q9NPR9 543 aa3.18□□□□□ -1.9
VPS50-216ENST00000484954 SCRT2Q9NQ03 307 aa3.18□□□□□ -1.9
VPS50-216ENST00000484954 TMEM30AQ9NV96 361 aa3.18□□□□□ -1.9
VPS50-216ENST00000484954 GAGE10A6NGK3 116 aa3.17□□□□□ -1.9
VPS50-216ENST00000484954 ZG16O60844 167 aa3.17□□□□□ -1.9
VPS50-216ENST00000484954 SEC31AO94979 1220 aaKnown RBP3.17□□□□□ -1.9
VPS50-216ENST00000484954 CGAP01215 116 aa3.17□□□□□ -1.9
VPS50-216ENST00000484954 AMBPP02760 352 aa3.17□□□□□ -1.9
VPS50-216ENST00000484954 ATP1A1P05023 1023 aaKnown RBP3.17□□□□□ -1.9
VPS50-216ENST00000484954 TIMP3P35625 211 aa3.17□□□□□ -1.9
VPS50-216ENST00000484954 CLCNKAP51800 687 aa3.17□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms