RNA–Protein interactions for RNA: ENST00000472044.1

PTCD3-209, Transcript of pentatricopeptide repeat domain 3, human

TSL 3

Gene PTCD3, Length 293 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTCD3-209	ENST00000472044	METTL2B	Q6P1Q9	378 aa	Known RBP	3.91	□□□□□ -1.78
PTCD3-209	ENST00000472044	SHF	Q7M4L6	423 aa		3.91	□□□□□ -1.78
PTCD3-209	ENST00000472044	HACE1	Q8IYU2	909 aa		3.91	□□□□□ -1.78
PTCD3-209	ENST00000472044	SMG7	Q92540	1137 aa	Known RBP	3.91	□□□□□ -1.78
PTCD3-209	ENST00000472044	ERGIC1	Q969X5	290 aa		3.91	□□□□□ -1.78
PTCD3-209	ENST00000472044	FAM120B	Q96EK7	910 aa	Known RBP	3.91	□□□□□ -1.78
PTCD3-209	ENST00000472044	CCDC34	Q96HJ3	373 aa		3.91	□□□□□ -1.78
PTCD3-209	ENST00000472044	METTL2A	Q96IZ6	378 aa	Known RBP	3.91	□□□□□ -1.78
PTCD3-209	ENST00000472044	LRFN5	Q96NI6	719 aa		3.91	□□□□□ -1.78
PTCD3-209	ENST00000472044	SH3GL2	Q99962	352 aa		3.91	□□□□□ -1.78
PTCD3-209	ENST00000472044	IFIH1	Q9BYX4	1025 aa	Known RBP	3.91	□□□□□ -1.78
PTCD3-209	ENST00000472044	RANGRF	Q9HD47	186 aa	Predicted RBP	3.91	□□□□□ -1.78
PTCD3-209	ENST00000472044	LTB4R2	Q9NPC1	389 aa		3.91	□□□□□ -1.78
PTCD3-209	ENST00000472044	RRP7BP	Q9NSQ0	103 aa		3.91	□□□□□ -1.78
PTCD3-209	ENST00000472044	FZD10	Q9ULW2	581 aa		3.91	□□□□□ -1.78
PTCD3-209	ENST00000472044	TAF1	P21675	1872 aa		3.9	□□□□□ -1.78
PTCD3-209	ENST00000472044	CDRT15L2	A8MXV6	281 aa		3.9	□□□□□ -1.79
PTCD3-209	ENST00000472044	INAFM1	C9JVW0	142 aa		3.9	□□□□□ -1.79
PTCD3-209	ENST00000472044		H3BNX3	289 aa		3.9	□□□□□ -1.79
PTCD3-209	ENST00000472044		J3KR12	359 aa		3.9	□□□□□ -1.79
PTCD3-209	ENST00000472044	HSPA12A	O43301	675 aa		3.9	□□□□□ -1.79
PTCD3-209	ENST00000472044	DAB1	O75553	588 aa		3.9	□□□□□ -1.79
PTCD3-209	ENST00000472044	TSPAN9	O75954	239 aa		3.9	□□□□□ -1.79
PTCD3-209	ENST00000472044	NKX2-2	O95096	273 aa		3.9	□□□□□ -1.79
PTCD3-209	ENST00000472044	FTCD	O95954	541 aa		3.9	□□□□□ -1.79
PTCD3-209	ENST00000472044	HNRNPH1	P31943	449 aa	Known RBP	3.9	□□□□□ -1.79
PTCD3-209	ENST00000472044	GARS	P41250	739 aa	Known RBP	3.9	□□□□□ -1.79
PTCD3-209	ENST00000472044	AMT	P48728	403 aa		3.9	□□□□□ -1.79
PTCD3-209	ENST00000472044	SORD	Q00796	357 aa		3.9	□□□□□ -1.79
PTCD3-209	ENST00000472044	TFAP4	Q01664	338 aa		3.9	□□□□□ -1.79
PTCD3-209	ENST00000472044	EPS8	Q12929	822 aa		3.9	□□□□□ -1.79
PTCD3-209	ENST00000472044	WTAP	Q15007	396 aa		3.9	□□□□□ -1.79
PTCD3-209	ENST00000472044	PCGF3	Q3KNV8	242 aa		3.9	□□□□□ -1.79
PTCD3-209	ENST00000472044	GKAP1	Q5VSY0	366 aa	Predicted RBP	3.9	□□□□□ -1.79
PTCD3-209	ENST00000472044	PMS2CL	Q68D20	193 aa		3.9	□□□□□ -1.79
PTCD3-209	ENST00000472044	PQLC2	Q6ZP29	291 aa		3.9	□□□□□ -1.79
PTCD3-209	ENST00000472044	SEPT14	Q6ZU15	432 aa		3.9	□□□□□ -1.79
PTCD3-209	ENST00000472044	CHST9	Q7L1S5	443 aa		3.9	□□□□□ -1.79
PTCD3-209	ENST00000472044	HAPLN4	Q86UW8	402 aa		3.9	□□□□□ -1.79
PTCD3-209	ENST00000472044	PRR26	Q8N8Z3	221 aa		3.9	□□□□□ -1.79
PTCD3-209	ENST00000472044	MIGA1	Q8NAN2	632 aa		3.9	□□□□□ -1.79
PTCD3-209	ENST00000472044	NEXN-AS1	Q8NBZ9	246 aa		3.9	□□□□□ -1.79
PTCD3-209	ENST00000472044	IGSF8	Q969P0	613 aa		3.9	□□□□□ -1.79
PTCD3-209	ENST00000472044	HARBI1	Q96MB7	349 aa		3.9	□□□□□ -1.79
PTCD3-209	ENST00000472044	FCRL4	Q96PJ5	515 aa		3.9	□□□□□ -1.79
PTCD3-209	ENST00000472044	NCAPG	Q9BPX3	1015 aa		3.9	□□□□□ -1.79
PTCD3-209	ENST00000472044	DCLK3	Q9C098	648 aa		3.9	□□□□□ -1.79
PTCD3-209	ENST00000472044	KCNN2	Q9H2S1	579 aa		3.9	□□□□□ -1.79
PTCD3-209	ENST00000472044	HINT3	Q9NQE9	182 aa	Known RBP	3.9	□□□□□ -1.79
PTCD3-209	ENST00000472044	HIF1AN	Q9NWT6	349 aa		3.9	□□□□□ -1.79
PTCD3-209	ENST00000472044	PAM16	Q9Y3D7	125 aa		3.9	□□□□□ -1.79
PTCD3-209	ENST00000472044	SQOR	Q9Y6N5	450 aa		3.9	□□□□□ -1.79
PTCD3-209	ENST00000472044	SESN1	Q9Y6P5	492 aa		3.9	□□□□□ -1.79
PTCD3-209	ENST00000472044	MAU2	Q9Y6X3	613 aa		3.9	□□□□□ -1.79
PTCD3-209	ENST00000472044		A0A1B0GVT2	93 aa		3.89	□□□□□ -1.79
PTCD3-209	ENST00000472044	CPED1	A4D0V7	1026 aa		3.89	□□□□□ -1.79
PTCD3-209	ENST00000472044	CLEC18A	A5D8T8	446 aa		3.89	□□□□□ -1.79
PTCD3-209	ENST00000472044	AKR1B15	C9JRZ8	316 aa	Predicted RBP	3.89	□□□□□ -1.79
PTCD3-209	ENST00000472044	OVOL3	O00110	214 aa		3.89	□□□□□ -1.79
PTCD3-209	ENST00000472044	TIMM23	O14925	209 aa		3.89	□□□□□ -1.79
PTCD3-209	ENST00000472044	JRK	O75564	520 aa		3.89	□□□□□ -1.79
PTCD3-209	ENST00000472044	OAZ2	O95190	189 aa		3.89	□□□□□ -1.79
PTCD3-209	ENST00000472044	HOXC6	P09630	235 aa		3.89	□□□□□ -1.79
PTCD3-209	ENST00000472044	CSH1	P0DML2	217 aa		3.89	□□□□□ -1.79
PTCD3-209	ENST00000472044	CSH2	P0DML3	217 aa		3.89	□□□□□ -1.79
PTCD3-209	ENST00000472044	POR	P16435	677 aa	Predicted RBP	3.89	□□□□□ -1.79
PTCD3-209	ENST00000472044	IL7R	P16871	459 aa		3.89	□□□□□ -1.79
PTCD3-209	ENST00000472044	HOXC9	P31274	260 aa		3.89	□□□□□ -1.79
PTCD3-209	ENST00000472044	PIGA	P37287	484 aa		3.89	□□□□□ -1.79
PTCD3-209	ENST00000472044	KCNJ4	P48050	445 aa		3.89	□□□□□ -1.79
PTCD3-209	ENST00000472044	MXI1	P50539	228 aa		3.89	□□□□□ -1.79
PTCD3-209	ENST00000472044	CDH8	P55286	799 aa		3.89	□□□□□ -1.79
PTCD3-209	ENST00000472044	NLRP5	P59047	1200 aa		3.89	□□□□□ -1.79
PTCD3-209	ENST00000472044	DSC1	Q08554	894 aa		3.89	□□□□□ -1.79
PTCD3-209	ENST00000472044	IRF3	Q14653	427 aa		3.89	□□□□□ -1.79
PTCD3-209	ENST00000472044	CDON	Q4KMG0	1287 aa		3.89	□□□□□ -1.79
PTCD3-209	ENST00000472044	TDRD12	Q587J7	1177 aa	Known RBP	3.89	□□□□□ -1.79
PTCD3-209	ENST00000472044	RAB41	Q5JT25	222 aa		3.89	□□□□□ -1.79
PTCD3-209	ENST00000472044	DAB2IP	Q5VWQ8	1189 aa		3.89	□□□□□ -1.79
PTCD3-209	ENST00000472044	GGNBP1	Q5YKI7	109 aa		3.89	□□□□□ -1.79
PTCD3-209	ENST00000472044	HIST2H2BC	Q6DN03	193 aa		3.89	□□□□□ -1.79
PTCD3-209	ENST00000472044	HIST2H2BD	Q6DRA6	164 aa		3.89	□□□□□ -1.79
PTCD3-209	ENST00000472044	C8orf82	Q6P1X6	216 aa	Predicted RBP	3.89	□□□□□ -1.79
PTCD3-209	ENST00000472044	C16orf54	Q6UWD8	224 aa		3.89	□□□□□ -1.79
PTCD3-209	ENST00000472044	SZRD1	Q7Z422	152 aa		3.89	□□□□□ -1.79
PTCD3-209	ENST00000472044	TSPAN33	Q86UF1	283 aa		3.89	□□□□□ -1.79
PTCD3-209	ENST00000472044	PELI3	Q8N2H9	469 aa		3.89	□□□□□ -1.79
PTCD3-209	ENST00000472044	SPATA6L	Q8N4H0	392 aa		3.89	□□□□□ -1.79
PTCD3-209	ENST00000472044	CLEC18C	Q8NCF0	446 aa		3.89	□□□□□ -1.79
PTCD3-209	ENST00000472044	RRNAD1	Q96FB5	475 aa	Known RBP	3.89	□□□□□ -1.79
PTCD3-209	ENST00000472044	OR2A14	Q96R47	310 aa		3.89	□□□□□ -1.79
PTCD3-209	ENST00000472044	SMARCAD1	Q9H4L7	1026 aa		3.89	□□□□□ -1.79
PTCD3-209	ENST00000472044	GPR108	Q9NPR9	543 aa		3.89	□□□□□ -1.79
PTCD3-209	ENST00000472044	UBA2	Q9UBT2	640 aa	Predicted RBP	3.89	□□□□□ -1.79
PTCD3-209	ENST00000472044	RCOR1	Q9UKL0	485 aa		3.89	□□□□□ -1.79
PTCD3-209	ENST00000472044	AGO1	Q9UL18	857 aa	Known RBP	3.89	□□□□□ -1.79
PTCD3-209	ENST00000472044	ZNF215	Q9UL58	517 aa	Predicted RBP	3.89	□□□□□ -1.79
PTCD3-209	ENST00000472044	PTGDR2	Q9Y5Y4	395 aa		3.89	□□□□□ -1.79
PTCD3-209	ENST00000472044	hCG_1807616	A0A1W2PRN6	198 aa		3.88	□□□□□ -1.79
PTCD3-209	ENST00000472044	DYTN	A2CJ06	578 aa		3.88	□□□□□ -1.79

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