RNA–Protein interactions for RNA: ENST00000469802.5

COL9A3-208, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 2

Gene COL9A3, Length 680 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-208ENST00000469802 SLC18A3Q16572 532 aa16.32■□□□□ 0.2
COL9A3-208ENST00000469802 ATP13A4Q4VNC1 1196 aa16.32■□□□□ 0.2
COL9A3-208ENST00000469802 SPACA3Q8IXA5 215 aa16.32■□□□□ 0.2
COL9A3-208ENST00000469802 ZNF248Q8NDW4 579 aa16.32■□□□□ 0.2
COL9A3-208ENST00000469802 PDCD6IPQ8WUM4 868 aaKnown RBP16.32■□□□□ 0.2
COL9A3-208ENST00000469802 NSMCE1Q8WV22 266 aa16.32■□□□□ 0.2
COL9A3-208ENST00000469802 PIH1D2Q8WWB5 315 aa16.32■□□□□ 0.2
COL9A3-208ENST00000469802 CCDC74AQ96AQ1 378 aa16.32■□□□□ 0.2
COL9A3-208ENST00000469802 DTD2Q96FN9 168 aa16.32■□□□□ 0.2
COL9A3-208ENST00000469802 SCRN2Q96FV2 425 aa16.32■□□□□ 0.2
COL9A3-208ENST00000469802 PRR11Q96HE9 360 aaPredicted RBP16.32■□□□□ 0.2
COL9A3-208ENST00000469802 PACSIN1Q9BY11 444 aa16.32■□□□□ 0.2
COL9A3-208ENST00000469802 TEX101Q9BY14 249 aa16.32■□□□□ 0.2
COL9A3-208ENST00000469802 SATB2Q9UPW6 733 aa16.32■□□□□ 0.2
COL9A3-208ENST00000469802 PCDHGA8Q9Y5G5 932 aa16.32■□□□□ 0.2
COL9A3-208ENST00000469802 FASNP49327 2511 aaKnown RBP16.32■□□□□ 0.2
COL9A3-208ENST00000469802 PRSS38A1L453 326 aa16.31■□□□□ 0.2
COL9A3-208ENST00000469802 NOBOXO60393 691 aa16.31■□□□□ 0.2
COL9A3-208ENST00000469802 CYP2A6P11509 494 aaPredicted RBP16.31■□□□□ 0.2
COL9A3-208ENST00000469802 NFKBIAP25963 317 aa16.31■□□□□ 0.2
COL9A3-208ENST00000469802 TEAD1P28347 426 aa16.31■□□□□ 0.2
COL9A3-208ENST00000469802 SKOR1P84550 965 aa16.31■□□□□ 0.2
COL9A3-208ENST00000469802 CCDC173Q0VFZ6 552 aa16.31■□□□□ 0.2
COL9A3-208ENST00000469802 SPIDRQ14159 915 aa16.31■□□□□ 0.2
COL9A3-208ENST00000469802 IHHQ14623 411 aa16.31■□□□□ 0.2
COL9A3-208ENST00000469802 PDK2Q15119 407 aa16.31■□□□□ 0.2
COL9A3-208ENST00000469802 ANKRD20A8PQ5CZ79 823 aa16.31■□□□□ 0.2
COL9A3-208ENST00000469802 C3orf38Q5JPI3 329 aa16.31■□□□□ 0.2
COL9A3-208ENST00000469802 OGFOD3Q6PK18 319 aa16.31■□□□□ 0.2
COL9A3-208ENST00000469802 HSD11B1LQ7Z5J1 315 aa16.31■□□□□ 0.2
COL9A3-208ENST00000469802 TSGA13Q96PP4 275 aa16.31■□□□□ 0.2
COL9A3-208ENST00000469802 SEMA3CQ99985 751 aa16.31■□□□□ 0.2
COL9A3-208ENST00000469802 NT5MQ9NPB1 228 aa16.31■□□□□ 0.2
COL9A3-208ENST00000469802 CTTNBP2NLQ9P2B4 639 aa16.31■□□□□ 0.2
COL9A3-208ENST00000469802 GULP1Q9UBP9 304 aa16.31■□□□□ 0.2
COL9A3-208ENST00000469802 RAI2Q9Y5P3 530 aa16.31■□□□□ 0.2
COL9A3-208ENST00000469802 MGAQ8IWI9 3026 aa16.3■□□□□ 0.2
COL9A3-208ENST00000469802 A0A1W2PQM1 296 aa16.3■□□□□ 0.2
COL9A3-208ENST00000469802 SSU72P8A0A1W2PR75 194 aa16.3■□□□□ 0.2
COL9A3-208ENST00000469802 PMS2P1A4D2B8 440 aa16.3■□□□□ 0.2
COL9A3-208ENST00000469802 D6RAR5 112 aa16.3■□□□□ 0.2
COL9A3-208ENST00000469802 TPM3P06753 285 aa16.3■□□□□ 0.2
COL9A3-208ENST00000469802 PDHA1P08559 390 aa16.3■□□□□ 0.2
COL9A3-208ENST00000469802 H2AFZP0C0S5 128 aa16.3■□□□□ 0.2
COL9A3-208ENST00000469802 MAN1A1P33908 653 aa16.3■□□□□ 0.2
COL9A3-208ENST00000469802 GJC1P36383 396 aa16.3■□□□□ 0.2
COL9A3-208ENST00000469802 ETV3P41162 512 aa16.3■□□□□ 0.2
COL9A3-208ENST00000469802 SSR1P43307 286 aaKnown RBP16.3■□□□□ 0.2
COL9A3-208ENST00000469802 TRIM14Q14142 442 aa16.3■□□□□ 0.2
COL9A3-208ENST00000469802 PTPRRQ15256 657 aa16.3■□□□□ 0.2
COL9A3-208ENST00000469802 CERCAMQ5T4B2 595 aa16.3■□□□□ 0.2
COL9A3-208ENST00000469802 ARMC12Q5T9G4 340 aa16.3■□□□□ 0.2
COL9A3-208ENST00000469802 SPECC1LQ69YQ0 1117 aa16.3■□□□□ 0.2
COL9A3-208ENST00000469802 USP45Q70EL2 814 aa16.3■□□□□ 0.2
COL9A3-208ENST00000469802 H2AFVQ71UI9 128 aa16.3■□□□□ 0.2
COL9A3-208ENST00000469802 TSPAN33Q86UF1 283 aa16.3■□□□□ 0.2
COL9A3-208ENST00000469802 HEATR4Q86WZ0 1026 aa16.3■□□□□ 0.2
COL9A3-208ENST00000469802 PQLC3Q8N755 202 aa16.3■□□□□ 0.2
COL9A3-208ENST00000469802 OR6C4Q8NGE1 309 aa16.3■□□□□ 0.2
COL9A3-208ENST00000469802 CTNNBL1Q8WYA6 563 aaPredicted RBP16.3■□□□□ 0.2
COL9A3-208ENST00000469802 LIN37Q96GY3 246 aaPredicted RBP16.3■□□□□ 0.2
COL9A3-208ENST00000469802 SLC46A1Q96NT5 459 aa16.3■□□□□ 0.2
COL9A3-208ENST00000469802 LGMNQ99538 433 aa16.3■□□□□ 0.2
COL9A3-208ENST00000469802 FRMD8Q9BZ67 464 aaPredicted RBP16.3■□□□□ 0.2
COL9A3-208ENST00000469802 POLR1EQ9GZS1 481 aaKnown RBP16.3■□□□□ 0.2
COL9A3-208ENST00000469802 TMEM168Q9H0V1 697 aa16.3■□□□□ 0.2
COL9A3-208ENST00000469802 CYP4F12Q9HCS2 524 aa16.3■□□□□ 0.2
COL9A3-208ENST00000469802 THSD1Q9NS62 852 aa16.3■□□□□ 0.2
COL9A3-208ENST00000469802 AMACRQ9UHK6 382 aa16.3■□□□□ 0.2
COL9A3-208ENST00000469802 LCMT1Q9UIC8 334 aa16.3■□□□□ 0.2
COL9A3-208ENST00000469802 CCDC187A0A096LP49 1063 aa16.29■□□□□ 0.2
COL9A3-208ENST00000469802 CDRT15L2A8MXV6 281 aa16.29■□□□□ 0.2
COL9A3-208ENST00000469802 PDE2AO00408 941 aaPredicted RBP16.29■□□□□ 0.2
COL9A3-208ENST00000469802 MATN3O15232 486 aa16.29■□□□□ 0.2
COL9A3-208ENST00000469802 MAP3K6O95382 1288 aa16.29■□□□□ 0.2
COL9A3-208ENST00000469802 SOD1P00441 154 aa16.29■□□□□ 0.2
COL9A3-208ENST00000469802 KRT7P08729 469 aa16.29■□□□□ 0.2
COL9A3-208ENST00000469802 TMEM253P0C7T8 217 aa16.29■□□□□ 0.2
COL9A3-208ENST00000469802 CCNCP24863 283 aa16.29■□□□□ 0.2
COL9A3-208ENST00000469802 MLLT3P42568 568 aaPredicted RBP16.29■□□□□ 0.2
COL9A3-208ENST00000469802 CDK3Q00526 305 aa16.29■□□□□ 0.2
COL9A3-208ENST00000469802 DPTQ07507 201 aa16.29■□□□□ 0.2
COL9A3-208ENST00000469802 COL9A2Q14055 689 aaPredicted RBP16.29■□□□□ 0.2
COL9A3-208ENST00000469802 IFI16Q16666 785 aaKnown RBP16.29■□□□□ 0.2
COL9A3-208ENST00000469802 TSR1Q2NL82 804 aaKnown RBP16.29■□□□□ 0.2
COL9A3-208ENST00000469802 TIGD7Q6NT04 549 aaPredicted RBP16.29■□□□□ 0.2
COL9A3-208ENST00000469802 Q6ZVL8 140 aa16.29■□□□□ 0.2
COL9A3-208ENST00000469802 TECPR1Q7Z6L1 1165 aa16.29■□□□□ 0.2
COL9A3-208ENST00000469802 TAF8Q7Z7C8 310 aa16.29■□□□□ 0.2
COL9A3-208ENST00000469802 CLEC14AQ86T13 490 aa16.29■□□□□ 0.2
COL9A3-208ENST00000469802 SFTPA2Q8IWL1 248 aa16.29■□□□□ 0.2
COL9A3-208ENST00000469802 CCL4L1Q8NHW4 92 aa16.29■□□□□ 0.2
COL9A3-208ENST00000469802 FCRL3Q96P31 734 aaPredicted RBP16.29■□□□□ 0.2
COL9A3-208ENST00000469802 UBL7Q96S82 380 aaPredicted RBP16.29■□□□□ 0.2
COL9A3-208ENST00000469802 TDRD1Q9BXT4 1180 aaKnown RBP16.29■□□□□ 0.2
COL9A3-208ENST00000469802 PHPT1Q9NRX4 125 aaPredicted RBP16.29■□□□□ 0.2
COL9A3-208ENST00000469802 APPL1Q9UKG1 709 aa16.29■□□□□ 0.2
COL9A3-208ENST00000469802 SSUH2Q9Y2M2 353 aa16.29■□□□□ 0.2
COL9A3-208ENST00000469802 A0A0J9YYE9 177 aa16.28■□□□□ 0.2
COL9A3-208ENST00000469802 TRBC1P01850 177 aa16.28■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 79 ms