RNA–Protein interactions for RNA: ENST00000460593.1

CPSF3-202, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 1 (best) BASIC

Gene CPSF3, Length 3,157 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-202ENST00000460593 NOBOXO60393 691 aa11.73□□□□□ -0.53
CPSF3-202ENST00000460593 CLASP2O75122 1294 aaKnown RBP11.73□□□□□ -0.53
CPSF3-202ENST00000460593 CPNE6O95741 557 aa11.73□□□□□ -0.53
CPSF3-202ENST00000460593 ALBP02768 609 aa11.73□□□□□ -0.53
CPSF3-202ENST00000460593 HTR1AP08908 422 aa11.73□□□□□ -0.53
CPSF3-202ENST00000460593 CYP2B6P20813 491 aa11.73□□□□□ -0.53
CPSF3-202ENST00000460593 GPX3P22352 226 aa11.73□□□□□ -0.53
CPSF3-202ENST00000460593 SLC6A2P23975 617 aa11.73□□□□□ -0.53
CPSF3-202ENST00000460593 CHRNA4P43681 627 aa11.73□□□□□ -0.53
CPSF3-202ENST00000460593 ECT2LQ008S8 904 aa11.73□□□□□ -0.53
CPSF3-202ENST00000460593 PPIL2Q13356 520 aa11.73□□□□□ -0.53
CPSF3-202ENST00000460593 HABP4Q5JVS0 413 aaKnown RBP11.73□□□□□ -0.53
CPSF3-202ENST00000460593 TMTC4Q5T4D3 741 aa11.73□□□□□ -0.53
CPSF3-202ENST00000460593 BTBD8Q5XKL5 378 aa11.73□□□□□ -0.53
CPSF3-202ENST00000460593 ZNF470Q6ECI4 717 aa11.73□□□□□ -0.53
CPSF3-202ENST00000460593 GTF2IRD2BQ6EKJ0 949 aa11.73□□□□□ -0.53
CPSF3-202ENST00000460593 SCIMPQ6UWF3 145 aa11.73□□□□□ -0.53
CPSF3-202ENST00000460593 HFE2Q6ZVN8 426 aa11.73□□□□□ -0.53
CPSF3-202ENST00000460593 SAPCD2Q86UD0 394 aa11.73□□□□□ -0.53
CPSF3-202ENST00000460593 GTF2IRD2Q86UP8 949 aa11.73□□□□□ -0.53
CPSF3-202ENST00000460593 ERO1BQ86YB8 467 aa11.73□□□□□ -0.53
CPSF3-202ENST00000460593 TRPV3Q8NET8 790 aa11.73□□□□□ -0.53
CPSF3-202ENST00000460593 NDNFQ8TB73 568 aa11.73□□□□□ -0.53
CPSF3-202ENST00000460593 ANKRD49Q8WVL7 239 aa11.73□□□□□ -0.53
CPSF3-202ENST00000460593 KIF12Q96FN5 646 aa11.73□□□□□ -0.53
CPSF3-202ENST00000460593 ZNF347Q96SE7 839 aa11.73□□□□□ -0.53
CPSF3-202ENST00000460593 OLFM1Q99784 485 aa11.73□□□□□ -0.53
CPSF3-202ENST00000460593 SMURF2Q9HAU4 748 aa11.73□□□□□ -0.53
CPSF3-202ENST00000460593 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP11.73□□□□□ -0.53
CPSF3-202ENST00000460593 MTRRQ9UBK8 725 aa11.73□□□□□ -0.53
CPSF3-202ENST00000460593 ZNF229Q9UJW7 825 aa11.73□□□□□ -0.53
CPSF3-202ENST00000460593 M0QYT0 321 aa11.73□□□□□ -0.53
CPSF3-202ENST00000460593 SIX3O95343 332 aaPredicted RBP11.73□□□□□ -0.53
CPSF3-202ENST00000460593 TKTP29401 623 aaKnown RBP11.73□□□□□ -0.53
CPSF3-202ENST00000460593 TTKP33981 857 aa11.73□□□□□ -0.53
CPSF3-202ENST00000460593 RFC2P35250 354 aa11.73□□□□□ -0.53
CPSF3-202ENST00000460593 TMBIM6P55061 237 aa11.73□□□□□ -0.53
CPSF3-202ENST00000460593 RAB15P59190 212 aa11.73□□□□□ -0.53
CPSF3-202ENST00000460593 STX1BP61266 288 aa11.73□□□□□ -0.53
CPSF3-202ENST00000460593 ADAM17P78536 824 aa11.73□□□□□ -0.53
CPSF3-202ENST00000460593 GRSF1Q12849 480 aaKnown RBP eCLIP11.73□□□□□ -0.53
CPSF3-202ENST00000460593 LAPTM5Q13571 262 aa11.73□□□□□ -0.53
CPSF3-202ENST00000460593 STXBP2Q15833 593 aa11.73□□□□□ -0.53
CPSF3-202ENST00000460593 INAQ16352 499 aa11.73□□□□□ -0.53
CPSF3-202ENST00000460593 DPY19L1Q2PZI1 675 aa11.73□□□□□ -0.53
CPSF3-202ENST00000460593 OTUD1Q5VV17 481 aaPredicted RBP11.73□□□□□ -0.53
CPSF3-202ENST00000460593 SLC16A12Q6ZSM3 486 aa11.73□□□□□ -0.53
CPSF3-202ENST00000460593 PIWIL4Q7Z3Z4 852 aaKnown RBP11.73□□□□□ -0.53
CPSF3-202ENST00000460593 RALGPS2Q86X27 583 aaPredicted RBP11.73□□□□□ -0.53
CPSF3-202ENST00000460593 ABI1Q8IZP0 508 aa11.73□□□□□ -0.53
CPSF3-202ENST00000460593 IPMKQ8NFU5 416 aa11.73□□□□□ -0.53
CPSF3-202ENST00000460593 CDHR1Q96JP9 859 aa11.73□□□□□ -0.53
CPSF3-202ENST00000460593 TEX37Q96LM6 180 aa11.73□□□□□ -0.53
CPSF3-202ENST00000460593 R3HDMLQ9H3Y0 253 aa11.73□□□□□ -0.53
CPSF3-202ENST00000460593 ANKRD6Q9Y2G4 727 aa11.73□□□□□ -0.53
CPSF3-202ENST00000460593 A0A087WZ62 844 aa11.72□□□□□ -0.53
CPSF3-202ENST00000460593 CLDN5O00501 218 aa11.72□□□□□ -0.53
CPSF3-202ENST00000460593 ANGPT2O15123 496 aa11.72□□□□□ -0.53
CPSF3-202ENST00000460593 BMP4P12644 408 aa11.72□□□□□ -0.53
CPSF3-202ENST00000460593 ATP5F1P24539 256 aaPredicted RBP11.72□□□□□ -0.53
CPSF3-202ENST00000460593 GSK3BP49841 420 aa11.72□□□□□ -0.53
CPSF3-202ENST00000460593 CSRP3P50461 194 aa11.72□□□□□ -0.53
CPSF3-202ENST00000460593 MBTD1Q05BQ5 628 aa11.72□□□□□ -0.53
CPSF3-202ENST00000460593 INCA1Q0VD86 236 aa11.72□□□□□ -0.53
CPSF3-202ENST00000460593 BROXQ5VW32 411 aa11.72□□□□□ -0.53
CPSF3-202ENST00000460593 IER5Q5VY09 327 aa11.72□□□□□ -0.53
CPSF3-202ENST00000460593 ARHGAP36Q6ZRI8 547 aa11.72□□□□□ -0.53
CPSF3-202ENST00000460593 ARMCX6Q7L4S7 300 aa11.72□□□□□ -0.53
CPSF3-202ENST00000460593 ANKRD13AQ8IZ07 590 aa11.72□□□□□ -0.53
CPSF3-202ENST00000460593 SPARTQ8N0X7 666 aa11.72□□□□□ -0.53
CPSF3-202ENST00000460593 PACRGLQ8N7B6 248 aa11.72□□□□□ -0.53
CPSF3-202ENST00000460593 CENPIQ92674 756 aaPredicted RBP11.72□□□□□ -0.53
CPSF3-202ENST00000460593 TDRD1Q9BXT4 1180 aaKnown RBP11.72□□□□□ -0.53
CPSF3-202ENST00000460593 ALG9Q9H6U8 611 aa11.72□□□□□ -0.53
CPSF3-202ENST00000460593 CYP3A43Q9HB55 503 aa11.72□□□□□ -0.53
CPSF3-202ENST00000460593 SCUBE2Q9NQ36 999 aa11.72□□□□□ -0.53
CPSF3-202ENST00000460593 IGSF5Q9NSI5 407 aa11.72□□□□□ -0.53
CPSF3-202ENST00000460593 PIGVQ9NUD9 493 aa11.72□□□□□ -0.53
CPSF3-202ENST00000460593 NUDT5Q9UKK9 219 aa11.72□□□□□ -0.53
CPSF3-202ENST00000460593 PNMA8BQ9ULN7 279 aaPredicted RBP11.72□□□□□ -0.53
CPSF3-202ENST00000460593 A0A1B0GTL3 188 aa11.72□□□□□ -0.53
CPSF3-202ENST00000460593 NPHS1O60500 1241 aa11.72□□□□□ -0.53
CPSF3-202ENST00000460593 ARNTP27540 789 aa11.72□□□□□ -0.53
CPSF3-202ENST00000460593 SEPHS1P49903 392 aa11.72□□□□□ -0.53
CPSF3-202ENST00000460593 DIO3P55073 304 aa11.72□□□□□ -0.53
CPSF3-202ENST00000460593 TPD52P55327 224 aaPredicted RBP11.72□□□□□ -0.53
CPSF3-202ENST00000460593 VBP1P61758 197 aa11.72□□□□□ -0.53
CPSF3-202ENST00000460593 ADARB1P78563 741 aaKnown RBP11.72□□□□□ -0.53
CPSF3-202ENST00000460593 OCA2Q04671 838 aa11.72□□□□□ -0.53
CPSF3-202ENST00000460593 ADIGQ0VDE8 80 aa11.72□□□□□ -0.53
CPSF3-202ENST00000460593 MAPRE1Q15691 268 aaKnown RBP11.72□□□□□ -0.53
CPSF3-202ENST00000460593 EFCAB12Q6NXP0 572 aa11.72□□□□□ -0.53
CPSF3-202ENST00000460593 XRRA1Q6P2D8 792 aa11.72□□□□□ -0.53
CPSF3-202ENST00000460593 STK32CQ86UX6 486 aa11.72□□□□□ -0.53
CPSF3-202ENST00000460593 CLEC4FQ8N1N0 589 aa11.72□□□□□ -0.53
CPSF3-202ENST00000460593 SFRP1Q8N474 314 aa11.72□□□□□ -0.53
CPSF3-202ENST00000460593 RAB2BQ8WUD1 216 aa11.72□□□□□ -0.53
CPSF3-202ENST00000460593 NSUN5Q96P11 429 aaKnown RBP11.72□□□□□ -0.53
CPSF3-202ENST00000460593 FDXACB1Q9BRP7 624 aaPredicted RBP11.72□□□□□ -0.53
CPSF3-202ENST00000460593 ZNF277Q9NRM2 450 aaPredicted RBP11.72□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms